SuccessConsole Output

Started by upstream project "ADAM-prb" build number 3124
originally caused by:
 GitHub pull request #2276 of commit 4e4ae1a6d98e79aa1e304ee7297abd5a7c8634ab automatically merged.
[EnvInject] - Loading node environment variables.
Building remotely on research-jenkins-worker-09 (ubuntu ubuntu-gpu research-09 ubuntu-avx2) in workspace /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository https://github.com/bigdatagenomics/adam.git
 > git init /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu # timeout=10
Fetching upstream changes from https://github.com/bigdatagenomics/adam.git
 > git --version # timeout=10
 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/*:refs/remotes/origin/* # timeout=15
 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10
Fetching upstream changes from https://github.com/bigdatagenomics/adam.git
 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/*:refs/remotes/origin/pr/* # timeout=15
Checking out Revision 19acc911f2995a8df016c4a624f383deded47f6a (origin/pr/2276/merge)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 19acc911f2995a8df016c4a624f383deded47f6a
First time build. Skipping changelog.
[ubuntu] $ /bin/bash /tmp/hudson3902067749984169855.sh
+ set -e
+ unset SPARK_TESTING
+ export JAVA_HOME=/usr/lib/jvm/java-8-oracle
+ JAVA_HOME=/usr/lib/jvm/java-8-oracle
+ export CONDA_BIN=/home/anaconda/bin/
+ CONDA_BIN=/home/anaconda/bin/
+ export PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ set +x
+ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/scripts/jenkins-test

# make a tempdir for writing maven cruft to
ADAM_MVN_TMP_DIR=$(mktemp -d -t adamTestMvnXXXXXXX)
mktemp -d -t adamTestMvnXXXXXXX
++ mktemp -d -t adamTestMvnXXXXXXX
+ ADAM_MVN_TMP_DIR=/tmp/adamTestMvnnKuH0eo

# add this tempdir to the poms...
find . -name pom.xml \
    -exec sed -i.bak \
    -e "s:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=${ADAM_MVN_TMP_DIR}:g" \
    {} \;
+ find . -name pom.xml -exec sed -i.bak -e 's:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=/tmp/adamTestMvnnKuH0eo:g' '{}' ';'
find . -name "*.bak" -exec rm -f {} \;
+ find . -name '*.bak' -exec rm -f '{}' ';'

# variable declarations
export PATH=${JAVA_HOME}/bin/:${PATH}
+ export PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
export MAVEN_OPTS="-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8"
+ export 'MAVEN_OPTS=-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8'
+ MAVEN_OPTS='-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8'
DIR=$( cd $( dirname ${BASH_SOURCE[0]} ) && pwd )
 cd $( dirname ${BASH_SOURCE[0]} ) && pwd 
 dirname ${BASH_SOURCE[0]} 
+++ dirname /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/scripts/jenkins-test
++ cd /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/scripts
++ pwd
+ DIR=/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/scripts
PROJECT_ROOT=${DIR}/..
+ PROJECT_ROOT=/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/scripts/..
VERSION=$(grep "<version>" ${PROJECT_ROOT}/pom.xml  | head -2 | tail -1 | sed 's/ *<version>//g' | sed 's/<\/version>//g')
grep "<version>" ${PROJECT_ROOT}/pom.xml  | head -2 | tail -1 | sed 's/ *<version>//g' | sed 's/<\/version>//g'
++ grep '<version>' /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/scripts/../pom.xml
++ head -2
++ tail -1
++ sed 's/ *<version>//g'
++ sed 's/<\/version>//g'
+ VERSION=0.33.0-SNAPSHOT

# is the hadoop version set?
if ! [[ ${HADOOP_VERSION} ]];
then
    echo "HADOOP_VERSION environment variable is not set."
    echo "Please set this variable before running."
    
    exit 1
fi
+ [[ -n 2.7.5 ]]

# is the spark version set?
if ! [[ ${SPARK_VERSION} ]];
then
    echo "SPARK_VERSION environment variable is not set."
    echo "Please set this variable before running."
    
    exit 1
fi
+ [[ -n 3.0.1 ]]

set -e
+ set -e

# move to Scala 2.11 if requested
if [ ${SCALA_VERSION} == 2.11 ];
then
    set +e
    ./scripts/move_to_scala_2.11.sh
    set -e
fi
+ '[' 2.12 == 2.11 ']'

# move to Scala 2.12 if requested
if [ ${SCALA_VERSION} == 2.12 ];
then
    set +e
    ./scripts/move_to_scala_2.12.sh
    set -e
fi
+ '[' 2.12 == 2.12 ']'
+ set +e
+ ./scripts/move_to_scala_2.12.sh
Scala version is already set to 2.12 (Scala artifacts have _2.12 version suffix in artifact name).
Cowardly refusing to move to Scala 2.12 a second time...
+ set -e

# move to Spark 2.x if requested
if [ ${SPARK_VERSION} == 2.4.6 ];
then
    set +e
    ./scripts/move_to_spark_2.sh
    set -e
fi
+ '[' 3.0.1 == 2.4.6 ']'

# move to Spark 3.x if requested
if [ ${SPARK_VERSION} == 3.0.1 ];
then
    set +e
    ./scripts/move_to_spark_3.sh
    set -e
fi
+ '[' 3.0.1 == 3.0.1 ']'
+ set +e
+ ./scripts/move_to_spark_3.sh
POM is already set up for Spark 3 (Spark 3 artifacts have -spark3 suffix in artifact names).
Cowardly refusing to move to Spark 3 a second time...
+ set -e

# print versions
echo "Testing ADAM version ${VERSION} on Spark ${SPARK_VERSION} and Hadoop ${HADOOP_VERSION}"
+ echo 'Testing ADAM version 0.33.0-SNAPSHOT on Spark 3.0.1 and Hadoop 2.7.5'
Testing ADAM version 0.33.0-SNAPSHOT on Spark 3.0.1 and Hadoop 2.7.5

# first, build the sources, run the unit tests, and generate a coverage report
mvn clean \
    -Dhadoop.version=${HADOOP_VERSION}
+ mvn clean -Dhadoop.version=2.7.5
OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.12                                                          [pom]
[INFO] ADAM_2.12: Shader workaround                                       [jar]
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils                           [jar]
[INFO] ADAM_2.12: Core                                                    [jar]
[INFO] ADAM_2.12: APIs for Java, Python                                   [jar]
[INFO] ADAM_2.12: CLI                                                     [jar]
[INFO] ADAM_2.12: Assembly                                                [jar]
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-parent-spark3_2.12 >-------------
[INFO] Building ADAM_2.12 0.33.0-SNAPSHOT                                 [1/7]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-shade-spark3_2.12 >-------------
[INFO] Building ADAM_2.12: Shader workaround 0.33.0-SNAPSHOT              [2/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-codegen-spark3_2.12 >------------
[INFO] Building ADAM_2.12: Avro-to-Dataset codegen utils 0.33.0-SNAPSHOT  [3/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-core-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: Core 0.33.0-SNAPSHOT                           [4/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-apis-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: APIs for Java, Python 0.33.0-SNAPSHOT          [5/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --------------< org.bdgenomics.adam:adam-cli-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: CLI 0.33.0-SNAPSHOT                            [6/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] -----------< org.bdgenomics.adam:adam-assembly-spark3_2.12 >------------
[INFO] Building ADAM_2.12: Assembly 0.33.0-SNAPSHOT                       [7/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-assembly-spark3_2.12 ---
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for ADAM_2.12 0.33.0-SNAPSHOT:
[INFO] 
[INFO] ADAM_2.12 .......................................... SUCCESS [  0.172 s]
[INFO] ADAM_2.12: Shader workaround ....................... SUCCESS [  0.008 s]
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils ........... SUCCESS [  0.008 s]
[INFO] ADAM_2.12: Core .................................... SUCCESS [  0.011 s]
[INFO] ADAM_2.12: APIs for Java, Python ................... SUCCESS [  0.003 s]
[INFO] ADAM_2.12: CLI ..................................... SUCCESS [  0.021 s]
[INFO] ADAM_2.12: Assembly ................................ SUCCESS [  0.003 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  0.383 s
[INFO] Finished at: 2020-10-19T18:56:43-07:00
[INFO] ------------------------------------------------------------------------
    
# if this is a pull request, we need to set the coveralls pr id
if [[ ! -z $ghprbPullId ]];
then
    COVERALLS_PRB_OPTION="-DpullRequest=${ghprbPullId}"
fi
+ [[ ! -z 2276 ]]
+ COVERALLS_PRB_OPTION=-DpullRequest=2276

# coveralls token should not be visible
set +x +v
+ set +x +v
OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.12                                                          [pom]
[INFO] ADAM_2.12: Shader workaround                                       [jar]
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils                           [jar]
[INFO] ADAM_2.12: Core                                                    [jar]
[INFO] ADAM_2.12: APIs for Java, Python                                   [jar]
[INFO] ADAM_2.12: CLI                                                     [jar]
[INFO] ADAM_2.12: Assembly                                                [jar]
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-parent-spark3_2.12 >-------------
[INFO] Building ADAM_2.12 0.33.0-SNAPSHOT                                 [1/7]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark3_2.12 ---
[INFO] Modified 0 of 242 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-parent-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark3_2.12 ---
[INFO] Modified 0 of 242 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-parent-spark3_2.12 ---
[INFO] Skipping SCoverage execution for project with packaging type 'pom'
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-parent-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-shade-spark3_2.12 >-------------
[INFO] Building ADAM_2.12: Shader workaround 0.33.0-SNAPSHOT              [2/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark3_2.12 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/src/main/java:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/2.12.8/classes at 1603159014063
[INFO] prepare-compile in 0 s
[INFO] compile in 1 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark3_2.12 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/2.12.8/classes
[INFO] 
[INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark3_2.12 ---
[INFO] Discovered 1 component descriptors(s)
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark3_2.12 ---
[INFO] No tests to run.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-shade-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark3_2.12 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-shade-spark3_2.12 ---
[WARNING] Skipping SCoverage execution - unsupported Scala version "2.12.8"
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/2.12.8/classes at 1603159017129
[INFO] prepare-compile in 0 s
[INFO] compile in 1 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark3_2.12 ---
[INFO] Discovered 1 component descriptors(s)
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark3_2.12 ---
[INFO] No tests to run.
[INFO] Skipping execution of surefire because it has already been run for this configuration
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-shade-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-shade-spark3_2.12 ---
[INFO] Skipping SCoverage report generation
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-codegen-spark3_2.12 >------------
[INFO] Building ADAM_2.12: Avro-to-Dataset codegen utils 0.33.0-SNAPSHOT  [3/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark3_2.12 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-codegen/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-codegen/target/2.12.8/classes at 1603159019328
[WARNING] warning: there were 5 deprecation warnings (since 2.12.0); re-run with -deprecation for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 4 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark3_2.12 ---
Discovery starting.
Discovery completed in 75 milliseconds.
Run starting. Expected test count is: 0
DiscoverySuite:
Run completed in 115 milliseconds.
Total number of tests run: 0
Suites: completed 1, aborted 0
Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0
No tests were executed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-codegen-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark3_2.12 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-codegen-spark3_2.12 ---
[WARNING] Skipping SCoverage execution - unsupported Scala version "2.12.8"
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark3_2.12 ---
Discovery starting.
Discovery completed in 79 milliseconds.
Run starting. Expected test count is: 0
DiscoverySuite:
Run completed in 122 milliseconds.
Total number of tests run: 0
Suites: completed 1, aborted 0
Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0
No tests were executed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-codegen-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-codegen-spark3_2.12 ---
[INFO] Skipping SCoverage report generation
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-core-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: Core 0.33.0-SNAPSHOT                           [4/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark3_2.12 ---
[INFO] Modified 2 of 204 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] Compiling 140 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/2.12.8/classes at 1603159031324
[WARNING] warning: there were 21 deprecation warnings
[WARNING] warning: there were 31 deprecation warnings (since 0.21.0)
[WARNING] warning: there was one deprecation warning (since 1.0.6)
[WARNING] warning: there was one deprecation warning (since 2.11.0)
[WARNING] warning: there were 175 deprecation warnings (since 2.12.0)
[WARNING] warning: there was one deprecation warning (since 2.12.7)
[WARNING] warning: there were 230 deprecation warnings in total; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] 8 warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 22 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark3_2.12 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 6 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/2.12.8/classes
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 152 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala:-1: info: compiling
[INFO] Compiling 70 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/2.12.8/test-classes at 1603159054779
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:59: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]       .build()
[WARNING]             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:61: warning: method richRecordToRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     val new_cigar = NormalizationUtils.leftAlignIndel(read)
[WARNING]                                                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:66: warning: method richRecordToRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     assert(RichAlignment(read).samtoolsCigar.getReadLength === new_cigar.getReadLength)
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/AlignmentConverterSuite.scala:171: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val newSAMRecord = newSAMReader.iterator().dropWhile(r => r.getReadName != readName)
[WARNING]                                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/AlignmentConverterSuite.scala:274: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setAlignments(seqAsJavaList(alignments))
[WARNING]                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/AlignmentConverterSuite.scala:311: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setAlignments(seqAsJavaList(alignments))
[WARNING]                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/AlignmentConverterSuite.scala:335: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val fragment = Fragment.newBuilder().setAlignments(List(record)).build()
[WARNING]                                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:54: warning: method getNotPrimaryAlignmentFlag in class SAMRecord is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(!testAlignment.getPrimaryAlignment === testSAMRecord.getNotPrimaryAlignmentFlag)
[WARNING]                                                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:89: warning: method getNotPrimaryAlignmentFlag in class SAMRecord is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(!testAlignment.getPrimaryAlignment === testSAMRecord.getNotPrimaryAlignmentFlag)
[WARNING]                                                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:106: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       val samIter = asScalaIterator(newSAMReader.iterator())
[WARNING]                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:53: warning: method extractDictionary in class SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information.
[WARNING]     SequenceDictionary(SAMSequenceDictionaryExtractor.extractDictionary(new File(path)))
[WARNING]                                                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:63: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     .alleles(List(Allele.create("A", true), Allele.create("T")))
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:69: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     .alleles(List(Allele.create("A", true), Allele.create("T"), Allele.create("G")))
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:75: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     .alleles(List(Allele.create("A", true), Allele.create("<NON_REF>", false)))
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:81: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     .alleles(List(Allele.create("A", true), Allele.create("<CN0>", false)))
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:109: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .alleles(List(Allele.create("A", true), Allele.create("T")))
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:143: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       GenotypeBuilder.create("NA12878", vcb.getAlleles(), genotypeAttributes))
[WARNING]                                                           ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:154: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT.getAlleles.sameElements(List(GenotypeAllele.REF, GenotypeAllele.ALT)))
[WARNING]                   ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:184: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       assert(adamVariant.variant.getFiltersFailed.sameElements(List("LowMQ")))
[WARNING]                                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:219: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       assert(adamGT.getVariantCallingAnnotations.getFiltersFailed.sameElements(List("LowMQ")))
[WARNING]                                                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:234: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(htsjdkVC.getAlternateAlleles.sameElements(List(Allele.create("T"))))
[WARNING]                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:245: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setStrandBiasComponents(List(0, 2, 4, 6).map(i => i: java.lang.Integer))
[WARNING]                                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:246: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setAlleles(List(GenotypeAllele.REF, GenotypeAllele.ALT))
[WARNING]                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:279: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setStrandBiasComponents(List(0, 2).map(i => i: java.lang.Integer))
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:280: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setAlleles(List(GenotypeAllele.REF, GenotypeAllele.ALT))
[WARNING]                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:298: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setStrandBiasComponents(List(0, 2).map(i => i: java.lang.Integer))
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:299: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setAlleles(List(GenotypeAllele.REF, GenotypeAllele.ALT))
[WARNING]                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:320: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     for ((allele, idx) <- vc.getAlternateAlleles.zipWithIndex) {
[WARNING]                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:328: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val gb = new GenotypeBuilder("NA12878", List(Allele.create("T"), Allele.create("G")))
[WARNING]                                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:347: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT1.getAlleles.sameElements(List(GenotypeAllele.ALT, GenotypeAllele.OTHER_ALT)))
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:349: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT1.getGenotypeLikelihoods
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:354: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT2.getAlleles.sameElements(List(GenotypeAllele.OTHER_ALT, GenotypeAllele.ALT)))
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:356: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT2.getGenotypeLikelihoods
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:380: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val gb = new GenotypeBuilder("NA12878", List(Allele.create("A", true), Allele.create("A", true)))
[WARNING]                                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:393: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT.getAlleles.sameElements(List(GenotypeAllele.REF, GenotypeAllele.REF)))
[WARNING]                   ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:396: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT.getNonReferenceLikelihoods
[WARNING]                   ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:421: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(variant.variant.getNames.length === 1)
[WARNING]                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:433: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(variant.variant.getNames.length === 2)
[WARNING]                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:543: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       genotypeAttributes)))((bldr, fn) => {
[WARNING]       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:693: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(gls(0) < -0.99e-1 && gls(0) > -1.1e-1)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:693: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(gls(0) < -0.99e-1 && gls(0) > -1.1e-1)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:694: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(gls(1) < -0.99e-3 && gls(1) > -1.1e-3)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:694: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(gls(1) < -0.99e-3 && gls(1) > -1.1e-3)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:695: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(gls(2) < -0.99e-6 && gls(2) > -1.1e-6)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:695: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(gls(2) < -0.99e-6 && gls(2) > -1.1e-6)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:714: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(sb(0) === 10)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:715: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(sb(1) === 12)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:716: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(sb(2) === 14)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:717: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(sb(3) === 16)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:762: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(failedFilters(0) === "FAILED_FILTER")
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:776: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(failedFilters(0) === "FAILED_FILTER1")
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:777: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(failedFilters(1) === "FAILED_FILTER2")
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:778: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(failedFilters(2) === "FAILED_FILTER3")
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:930: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]         .map(d => d: java.lang.Double))
[WARNING]             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:954: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]           .map(i => i: java.lang.Integer))
[WARNING]               ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:962: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]         .map(i => i: java.lang.Integer))
[WARNING]             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1089: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setFiltersFailed(Seq("lowmq"))
[WARNING]                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1101: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setFiltersFailed(Seq("lowmq", "lowdp"))
[WARNING]                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1195: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(v.getNames.length === 1)
[WARNING]              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1205: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(v.getNames.length === 2)
[WARNING]              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1262: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]         vcb.filters(Set("FAILED1", "FAILED2", "FAILED3"))
[WARNING]                        ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1267: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val failedSet = v.getFiltersFailed.toSet
[WARNING]                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1285: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setNames(Seq("name"))
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1295: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setNames(Seq("name1", "name2"))
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1364: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setFiltersFailed(Seq("FAILED"))
[WARNING]                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1378: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setFiltersFailed(Seq("FAILED1", "FAILED2"))
[WARNING]                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1493: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       10).map(i => i: java.lang.Integer)
[WARNING]              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1501: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       10, 13, 16).map(i => i: java.lang.Integer)
[WARNING]                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1516: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       0.1f).map(i => i: java.lang.Float)
[WARNING]                ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1523: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val acList: java.util.List[String] = List("+Inf")
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1530: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val acList: java.util.List[String] = List("-Inf")
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1538: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       0.1f, 0.01f, 0.001f).map(i => i: java.lang.Float)
[WARNING]                               ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1552: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val acList: java.util.List[String] = List("10D90M")
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1559: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val acList: java.util.List[String] = List("10D90M", "100M", "90M10D")
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1575: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       5, 10).map(i => i: java.lang.Integer)
[WARNING]                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1584: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       5, 10, 13, 16).map(i => i: java.lang.Integer)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1601: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       5, 10).map(i => i: java.lang.Integer)
[WARNING]                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1610: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       5, 10, 13, 16).map(i => i: java.lang.Integer)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1627: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       5, 10).map(i => i: java.lang.Integer)
[WARNING]                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1636: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       5, 10, 13, 16).map(i => i: java.lang.Integer)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2436: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("ONE_INT", "42")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2459: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("FOUR_INTS", "5,10,15,20")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2482: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("FOUR_FLOATS", "5.0,10.1,15.2,20.3")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2505: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("A_INT", "10,15,20")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2528: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("R_INT", "5,10,15,20")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2551: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("R_STRING", "foo,bar,baz")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2574: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("STRING_G", "foo,bar,baz")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:37: warning: variable start in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.start == featureToConvert.start)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:38: warning: variable end in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.end == featureToConvert.end)
[WARNING]                                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:40: warning: variable score in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.count == featureToConvert.score)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:57: warning: variable start in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.start == featureToConvert.start)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:58: warning: variable end in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.end == featureToConvert.end)
[WARNING]                                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:60: warning: variable score in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.count == featureToConvert.score)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:61: warning: variable sampleId in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.optSampleId == Some(featureToConvert.sampleId))
[WARNING]                                                                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:194: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     assert(read.mdTag.get.end === read.getEnd)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:475: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     val tag = read.mdTag.get
[WARNING]               ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:482: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     assert(tag.getReference(read) === "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAA")
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:495: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     val tag = read.mdTag.get
[WARNING]               ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:496: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     assert(tag.getReference(read, withGaps = true) === "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAA")
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:510: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar)
[WARNING]                                      ^
[WARNING] 168 warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 24 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark3_2.12 ---
Discovery starting.
Discovery completed in 1 second, 567 milliseconds.
Run starting. Expected test count is: 1175
RepairPartitionsSuite:
- don't pull from the first partition
- properly handle pulling from an empty iterator
- gets a single read from the partition if there are no other reads in the pair
- gets all the reads from a pair from the start of a partition
- properly handle dropping from an empty iterator
- don't drop from the first partition
- drop a single read from the partition if there are no other reads in the pair
- drops all the reads from a pair from the start of a partition
- only append to the first partition
- drop a single read from the partition and append read when in the middle
- drop reads from the start and don't append when in the last partition
- can't have more records than number of partitions
- unroll array for broadcast
2020-10-19 18:58:02 WARN  Utils:69 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0)
2020-10-19 18:58:02 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-10-19 18:58:02 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- move pairs around an rdd
FlagStatSuite:
- Standard FlagStat test
ModPartitionerSuite:
- report number of partitions correctly
- partition a number that is lower than the number of partitions and positive
- partition a number that is greater than the number of partitions and positive
- partition a number that is lower than the number of partitions and negative
- partition a number that is greater than the number of partitions and negative
- fire an exception if input is not an integer
TwoBitFileSuite:
- correctly read sequence from .2bit file
- correctly return masked sequences from .2bit file
- correctly return Ns from .2bit file
- correctly calculates sequence dictionary
NonoverlappingRegionsSuite:
- alternating returns an alternating seq of items
- Single region returns itself
- Two adjacent regions will be merged
- Nonoverlapping regions will all be returned
- Many overlapping regions will all be merged
- ADAMRecords return proper references
ReferencePositionSuite:
- create reference position from mapped read
- create reference position from variant
- create reference position from genotype
- create reference position from variant starting at vcf 0
- create reference position from genotype starting at vcf 0
ConsensusGeneratorFromReadsSuite:
- checking search for consensus list for artificial reads
FragmentConverterSuite:
- build a fragment collector and convert to a read
- if a fragment isn't associated with a contig, don't get a fragment collector
- convert an rdd of discontinuous fragments, all from the same contig
- convert an rdd of contiguous fragments, all from the same contig
- convert an rdd of varied fragments from multiple contigs
FileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
RichAlignmentSuite:
- Unclipped Start
- Unclipped End
- tags contains optional fields
- read overlap unmapped read
- read overlap reference position
- read overlap same position different contig
SingleReadBucketSuite:
- convert unmapped pair to fragment
- convert proper pair to fragment
- convert read pair to fragment with first of pair chimeric read
RecalibrationTableSuite:
- look up quality scores in table
FlankSlicesSuite:
- don't put flanks on non-adjacent slices
- put flanks on adjacent slices
InterleavedFastqInputFormatSuite:
- interleaved FASTQ hadoop reader: interleaved_fastq_sample1.ifq->interleaved_fastq_sample1.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample2.ifq->interleaved_fastq_sample2.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample3.ifq->interleaved_fastq_sample3.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample4.ifq->interleaved_fastq_sample4.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample5.ifq->interleaved_fastq_sample5.ifq.output
TreeRegionJoinSuite:
- run a join between data on a single contig
ReferenceRegionSuite:
- cannot create an empty predicate
- parse empty string throws IllegalArgumentException
- parse contigName only string into reference regions
- parse to end strings into reference regions
- parse string into reference regions
- contains(: ReferenceRegion)
- contains(: ReferencePosition)
- merge
- overlaps and covers
- overlapsBy and coversBy
- distance(: ReferenceRegion)
- distance(: ReferencePosition)
- unstrandedDistance
- subtract fails on non-overlapping and non-covering regions
- subtract
- create region from unmapped read fails
- create region from read with null alignment positions fails
- create stranded region from unmapped read fails
- create stranded region from read with null alignment positions fails
- create stranded region from read with null alignment strand fails
- create stranded region from read on forward strand
- create stranded region from read on reverse strand
- create region from mapped read contains read start and end
- validate that adjacent regions can be merged
- validate that non-adjacent regions cannot be merged
- validate that nearby regions can be merged
- validate that non-nearby regions cannot be merged
- compute convex hull of two sets
- region name is sanitized when creating region from read
- intersection fails on non-overlapping regions
- intersection fails when minOverlap is not met
- compute intersection
- overlap tests for oriented reference region
- check the width of a reference region
- make a reference region for a variant or genotype
- make a reference region for a variant or genotype starting at VCF 0
- uniformly pad a reference region
- uniformly pad a reference region into negative coordinate space, ensure non negative start
- unevenly pad a reference region
- unevenly pad a reference region into negative coordinate space, ensure non negative start
- can build an open ended reference region
- can build an open ended reference region with strand
- can build a reference region with an open start position
- can build a reference region with an open start position with strand
- can build a reference region that covers the entirety of a contig
- can build a reference region that covers the entirety of a contig with strand
- convert a genotype and then get the reference region
- create region from feature with null alignment positions fails
- create stranded region from feature with null alignment positions fails
- create stranded region from feature with null alignment strand fails
- create stranded region from feature on forward strand
- create stranded region from feature on reverse strand
CoverageDatasetSuite:
- correctly saves coverage
- can read a bed file to coverage
- correctly filters coverage with predicate
- keeps sample metadata
- can read a bed file with multiple samples to coverage
- correctly flatmaps coverage without aggregated bins
- correctly flatmaps coverage with aggregated bins
- collapses coverage records in one partition
- approximately collapses coverage records in multiple partitions
2020-10-19 18:58:19 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform coverage to slice genomic dataset
- transform coverage to feature genomic dataset
2020-10-19 18:58:20 WARN  package:69 - Truncated the string representation of a plan since it was too large. This behavior can be adjusted by setting 'spark.sql.debug.maxToStringFields'.
- transform coverage to fragment genomic dataset
- transform coverage to read genomic dataset
- transform coverage to genotype genomic dataset
- transform coverage to variant genomic dataset
- transform coverage to variant context genomic dataset
- copy coverage rdd
- copy coverage dataset
- copy coverage rdd without sequence dictionary
- copy coverage dataset without sequence dictionary
- transform dataset via java API
RecalibratorSuite:
- don't replace quality if quality was null
- if no covariates, return alignment
- skip recalibration if base is below quality threshold
- recalibrate changed bases above quality threshold
SliceDatasetSuite:
- create a new slice genomic dataset
- create a new slice genomic dataset with sequence dictionary
- merge slices into a sequence genomic dataset
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert slices to reads
- convert slices to sequences
GenotypeDatasetSuite:
- union two genotype genomic datasets together
- round trip to parquet
- round trip to partitioned parquet
- use broadcast join to pull down genotypes mapped to targets
- use right outer broadcast join to pull down genotypes mapped to targets
- use shuffle join to pull down genotypes mapped to targets
- use right outer shuffle join to pull down genotypes mapped to targets
- use left outer shuffle join to pull down genotypes mapped to targets
- use full outer shuffle join to pull down genotypes mapped to targets
- use shuffle join with group by to pull down genotypes mapped to targets
- use right outer shuffle join with group by to pull down genotypes mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2020-10-19 18:58:38 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform genotypes to slice genomic dataset
- transform genotypes to coverage genomic dataset
- transform genotypes to feature genomic dataset
- transform genotypes to fragment genomic dataset
- transform genotypes to read genomic dataset
- transform genotypes to variant genomic dataset
- transform genotypes to variant context genomic dataset
- loading genotypes then converting to variants yields same output as loading variants
- filter RDD bound genotypes to genotype filters passed
- filter dataset bound genotypes to genotype filters passed
- filter RDD bound genotypes by genotype quality
- filter dataset bound genotypes by genotype quality
- filter RDD bound genotypes by read depth
- filter dataset bound genotypes by read depth
- filter RDD bound genotypes by alternate read depth
- filter dataset bound genotypes by alternate read depth
- filter RDD bound genotypes by reference read depth
- filter dataset bound genotypes by reference read depth
- filter RDD bound genotypes by sample
- filter dataset bound genotypes by sample
- filter RDD bound genotypes by samples
- filter dataset bound genotypes by samples
- filter RDD bound no call genotypes
- filter dataset no call genotypes
- round trip gVCF END attribute without nested variant annotations rdd bound
- round trip gVCF END attribute without nested variant annotations dataset bound
- round trip gVCF END attribute with nested variant annotations rdd bound
- round trip gVCF END attribute with nested variant annotations dataset bound
- transform dataset via java API
FragmentDatasetSuite:
- don't lose any reads when piping interleaved fastq to sam
- don't lose any reads when piping tab5 to sam
- don't lose any reads when piping tab6 to sam
- use broadcast join to pull down fragments mapped to targets
- use right outer broadcast join to pull down fragments mapped to targets
- use shuffle join to pull down fragments mapped to targets
- use right outer shuffle join to pull down fragments mapped to targets
- use left outer shuffle join to pull down fragments mapped to targets
- use full outer shuffle join to pull down fragments mapped to targets
- use shuffle join with group by to pull down fragments mapped to targets
- use right outer shuffle join with group by to pull down fragments mapped to targets
- bin quality scores in fragments
- union two genomic datasets of fragments together
- load parquet to sql, save, re-read from avro
- transform fragments to slice genomic dataset
- transform fragments to coverage genomic dataset
- transform fragments to feature genomic dataset
- transform fragments to read genomic dataset
- transform fragments to genotype genomic dataset
- transform fragments to variant genomic dataset
- transform fragments to variant context genomic dataset
- paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names as fragments
- transform dataset via java API
- dataset and rdd conversion to alignments are equivalent
SingleFastqInputFormatSuite:
- FASTQ hadoop reader: fastq_sample1.fq->single_fastq_sample1.fq.output
- FASTQ hadoop reader: fastq_sample2.fq->single_fastq_sample2.fq.output
- FASTQ hadoop reader: fastq_sample3.fq->single_fastq_sample3.fq.output
- FASTQ hadoop reader: fastq_sample4.fq->single_fastq_sample4.fq.output
VariantContextDatasetSuite:
- load a gvcf with a missing info field set to .
- union two variant context genomic datasets together
- can write, then read in .vcf file
- can write as a single file via simple saveAsVcf method, then read in .vcf file
- can write as a single file via full saveAsVcf method, then read in .vcf file
- transform a vcf file with bad header
- read a vcf file with multi-allelic variants to split
- support VCFs with +Inf/-Inf float values
- support VCFs with `nan` instead of `NaN` float values
- don't lose any variants when piping as VCF
- pipe works with empty partitions
- don't lose any non-default VCF header lines or attributes when piping as VCF
- save a file sorted by contig index
- save a lexicographically sorted file
- save a multiallelic gvcf !!! IGNORED !!!
- test metadata
- save sharded bgzip vcf
- save bgzip vcf as single file
- can't save file with non-vcf extension
- transform variant contexts to slice genomic dataset
- transform variant contexts to coverage genomic dataset
- transform variant contexts to feature genomic dataset
- transform variant contexts to fragment genomic dataset
- transform variant contexts to read genomic dataset
- transform variant contexts to genotype genomic dataset
- transform variant contexts to variant genomic dataset
- save and reload from partitioned parquet
- transform dataset via java API
ConsensusSuite:
- test the insertion of a consensus insertion into a reference
- test the insertion of a consensus deletion into a reference
- inserting empty consensus returns the reference
SequenceDatasetSuite:
- create a new sequence genomic dataset
- create a new sequence genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert sequences to reads
- convert sequences to slices
- slice sequences to a maximum length
- slice sequences shorter than maximum length
- filter sequences by overlapping region
- filter sequences failing to overlap region
- filter sequences by overlapping regions
- filter sequences failing to overlap regions
- slice sequences overlapping a smaller region
- slice sequences overlapping a larger region
- slice sequences failing to overlap a region
- slice sequences overlapping smaller regions
- slice sequences overlapping larger regions
- slice sequences failing to overlap regions
AttributeUtilsSuite:
- parseTags returns a reasonable set of tagStrings
- parseTags works with NumericSequence tagType
- empty string is parsed as zero tagStrings
- incorrectly formatted tag throws an exception
- string tag with a ':' in it is correctly parsed
- oq string tag with many ':' in it is correctly parsed
- oq string tag with a ',' in it is correctly parsed
- if a tag is an array but doesn't define it's format, throw
MarkDuplicatesSuite:
- single read
- reads at different positions
- reads at the same position
- reads at the same position with clipping
- reads on reverse strand
- unmapped reads
- read pairs
- read pairs with fragments
- quality scores
- read pairs that cross chromosomes
- single fragment
- fragments at different positions
- fragments at the same position
- fragments at the same position with clipping
- fragments on reverse strand
- unmapped fragments
- read pairs as fragments
- read pairs with fragments as fragments
- chimeric fragments
- inverse pairs
- supplemental reads
TranscriptEffectConverterSuite:
- parse empty transcript effect
- parse empty transcript effect strict validation stringency
- parse invalid transcript effect
- parse invalid transcript effect strict validation stringency
- parse transcript effect
- parse empty list VCF ANN attribute
- parse empty list VCF ANN attribute strict validation stringency
- parse empty string VCF ANN attribute
- parse empty string VCF ANN attribute strict validation stringency
- parse invalid VCF ANN attribute
- parse invalid VCF ANN attribute strict validation stringency
- parse VCF ANN attribute with one transcript effect
- parse VCF ANN attribute with multiple transcript effects
- convert to transcript effect from null VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from empty string VCF ANN attribute in variant context
- convert to transcript effect from empty string VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from invalid VCF ANN attribute in variant context
- convert to transcript effect from invalid VCF ANN attribute in variant context strict validation stringency
2020-10-19 18:59:28 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid number in variant context lenient validation stringency
2020-10-19 18:59:28 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context lenient validation stringency
- convert to transcript effect from VCF ANN attribute with invalid number in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute in variant context different alt allele
- convert to transcript effect from VCF ANN attribute in variant context same alt allele
- convert to transcript effect from VCF ANN attribute in variant context multiple effects same alt allele
- convert transcript effect to VCF ANN attribute value
- convert transcript effect with null fields to VCF ANN attribute value
2020-10-19 18:59:28 WARN  TranscriptEffectConverter$:190 - Incorrect fractional value ?/2, missing numerator
- convert transcript effect with incorrect fractional value to VCF ANN attribute value
IndelRealignmentTargetSuite:
- checking simple realignment target
- creating simple target from read with deletion
- creating simple target from read with insertion
- joining simple realignment targets on same chr
- joining simple realignment targets on different chr throws exception
- creating targets from three intersecting reads, same indel
- creating targets from three intersecting reads, two different indel
- creating targets from two disjoint reads
- creating targets for artificial reads: one-by-one
- creating targets for artificial reads: all-at-once (merged)
- creating indel targets for mason reads
- additional indel targets taken from consensus generator
NormalizationUtilsSuite:
- cannot move an indel left if there are no bases to it's left
- move a simple indel to farthest position left until bases run out
- move a simple indel to farthest position left, past length of indel
- cannot move a left normalized indel in a short tandem repeat
- move an indel in a short tandem repeat
- move an indel in a short tandem repeat of more than 2 bases, where shift is not an integer multiple of repeated sequence length
- moving a simple read with single deletion that cannot shift
- shift an indel left by 0 in a cigar
- shift an indel left by 1 in a cigar
- do not left align a complex read which is already left aligned
ReadGroupDictionarySuite:
- simple conversion to and from sam read group
- sample name must be set
- simple equality checks
- get samples from read group dictionary
- empty read group is empty
- merging a dictionary with itself should work
- round trip a record with all attributes set
RightOuterTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
InnerShuffleRegionJoinSuite:
- Overlapping reference regions
- Multiple reference regions do not throw exception
FeatureDatasetSuite:
- round trip GTF format
- save GTF as GFF3 format
- save GTF as BED format
- save GTF as IntervalList format
- save GTF as NarrowPeak format
- save GFF3 as GTF format
- save GFF3 as BED format
- save GFF3 as IntervalList format
- save GFF3 as NarrowPeak format
- round trip GFF3 format
- ignore FASTA sequence in GFF3 file
- save BED as GTF format
- save BED as GFF3 format
- save BED as IntervalList format
- save BED as NarrowPeak format
- round trip BED6 format
- keeps sample metadata
- round trip BED12 format
- save to UCSC BED format
- save IntervalList as GTF format
- save IntervalList as GFF3 format
- save IntervalList as BED format
- save IntervalList as IntervalList format
- save IntervalList as NarrowPeak format
- round trip IntervalList format
- save NarrowPeak as GTF format
- save NarrowPeak as GFF3 format
- save NarrowPeak as BED format
- save NarrowPeak as IntervalList format
- save NarrowPeak as NarrowPeak format
- round trip NarrowPeak format
- sort by reference
- sort by reference and feature fields
- sort gene features by reference and gene structure
- sort transcript features by reference and gene structure
- sort exon features by reference and gene structure
- sort intron features by reference and gene structure
- correctly flatmaps CoverageDataset from FeatureDataset
- use broadcast join to pull down features mapped to targets
- use right outer broadcast join to pull down features mapped to targets
- use shuffle join to pull down features mapped to targets
- use right outer shuffle join to pull down features mapped to targets
- use left outer shuffle join to pull down features mapped to targets
- use full outer shuffle join to pull down features mapped to targets
- use shuffle join with group by to pull down features mapped to targets
- use right outer shuffle join with group by to pull down features mapped to targets
- union two feature rdds together
- obtain sequence dictionary contig lengths from header in IntervalList format
- don't lose any features when piping as BED format
- don't lose any features when piping as GTF format
- don't lose any features when piping as GFF3 format
- don't lose any features when piping as NarrowPeak format
- load parquet to sql, save, re-read from avro
- load partitioned parquet to sql, save, re-read from avro
2020-10-19 18:59:49 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform features to slice genomic dataset
- transform features to coverage genomic dataset
- transform features to fragment genomic dataset
- transform features to read genomic dataset
- transform features to genotype genomic dataset
- transform features to variant genomic dataset
- transform features to variant context genomic dataset
- filter RDD bound features by feature type
- filter dataset bound features by feature type
- filter RDD bound features by feature types
- filter dataset bound features by feature types
- filter RDD bound features by gene
- filter dataset bound features by gene
- filter RDD bound features by genes
- filter dataset bound features by genes
- filter RDD bound features by transcript
- filter dataset bound features by transcript
- filter RDD bound features by transcripts
- filter dataset bound features by transcripts
- filter RDD bound features by exon
- filter dataset bound features by exon
- filter RDD bound features by exons
- filter dataset bound features by exons
- filter RDD bound features by score
- filter dataset bound features by score
- filter RDD bound features by parent
- filter dataset bound features by parent
- filter RDD bound features by parents
- filter dataset bound features by parents
- filter RDD bound features by attribute
- filter dataset bound features by attribute
- transform dataset via java API
AlphabetSuite:
- test size of a case-sensitive alphabet
- test apply of a case-sensitive alphabet
- test reverse complement of a case-sensitive alphabet
- test exact reverse complement of a case-sensitive alphabet
- test size of a case-insensitive alphabet
- test apply of a case-insensitive alphabet
- test reverse complement of a case-insensitive alphabet
- test exact reverse complement of a case-insensitive alphabet
- DNA alphabet
- map unknown bases to N
SortedGenomicDatasetSuite:
- testing that partition and sort provide correct outputs
- testing copartition maintains or adds sort
- testing that we don't drop any data on the right side even though it doesn't map to a partition on the left
- testing that sorted shuffleRegionJoin matches unsorted
- testing that sorted fullOuterShuffleRegionJoin matches unsorted
- testing that sorted rightOuterShuffleRegionJoin matches unsorted
- testing that sorted leftOuterShuffleRegionJoin matches unsorted
- testing that we can persist the sorted knowledge
VariantContextConverterSuite:
- Convert htsjdk site-only SNV to ADAM
- Convert somatic htsjdk site-only SNV to ADAM
- Convert htsjdk site-only CNV to ADAM
- Convert htsjdk SNV w/ genotypes w/ phase information to ADAM
- Convert htsjdk SNV with different variant filters to ADAM
- Convert htsjdk SNV with different genotype filters to ADAM
- Convert ADAM site-only SNV to htsjdk
- Convert ADAM SNV w/ genotypes to htsjdk
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with strict validation
2020-10-19 19:00:03 WARN  VariantContextConverter:190 - Applying annotation extraction function org.bdgenomics.adam.converters.VariantContextConverter$$Lambda$694/711112124@2e4fa817 to {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null} failed with java.lang.IllegalArgumentException: requirement failed: Illegal strand bias components length. Must be empty or 4. In:
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with lenient validation
{"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null}.
- Convert htsjdk multi-allelic sites-only SNVs to ADAM
- Convert htsjdk multi-allelic SNVs to ADAM and back to htsjdk
- Convert gVCF reference records to ADAM
- Convert htsjdk variant context with no IDs to ADAM
- Convert htsjdk variant context with one ID to ADAM
- Convert htsjdk variant context with multiple IDs to ADAM
- Convert ADAM variant context with no names to htsjdk
- Convert ADAM variant context with one name to htsjdk
- Convert ADAM variant context with multiple names to htsjdk
- Convert ADAM variant context with null filters applied to htsjdk
- Convert ADAM variant context with no filters applied to htsjdk
- Convert ADAM variant context with passing filters to htsjdk
- Convert ADAM variant context with failing filters to htsjdk
- no phasing set going htsjdk->adam
- phased but no phase set info going htsjdk->adam
- set phase set and extract going htsjdk->adam
- no allelic depth going htsjdk->adam
- set allelic depth going htsjdk->adam
- no gt read depth going htsjdk->adam
- extract gt read depth going htsjdk->adam
- no min gt read depth going htsjdk->adam
- extract min gt read depth going htsjdk->adam
- no genotype quality going htsjdk->adam
- extract genotype quality going htsjdk->adam
- no phred likelihood going htsjdk->adam
- extract phred likelihoods going htsjdk->adam
- no strand bias info going htsjdk->adam
- extract strand bias info going htsjdk->adam
- no filters going htsjdk->adam
- filters passed going htsjdk->adam
- extract single filter going htsjdk->adam
- extract multiple filters going htsjdk->adam
- no fisher strand bias going htsjdk->adam
- extract fisher strand bias going htsjdk->adam
- no rms mapping quality going htsjdk->adam
- extract rms mapping quality going htsjdk->adam
- no mq0 going htsjdk->adam
- extract mq0 going htsjdk->adam
- no gt read depth going adam->htsjdk
- extract gt read depth going adam->htsjdk
- throw iae if missing one component of gt read depth going adam->htsjdk
- no depth going adam->htsjdk
- extract depth going adam->htsjdk
- no min depth going adam->htsjdk
- extract min depth going adam->htsjdk
- no quality going adam->htsjdk
- extract quality going adam->htsjdk
- no genotype likelihoods going adam->htsjdk
- extract genotype likelihoods going adam->htsjdk
- no strand bias going adam->htsjdk
- malformed strand bias going adam->htsjdk
- extract strand bias going adam->htsjdk
- no phasing info going adam->htsjdk
- unphased going adam->htsjdk
- phased but no ps/pq going adam->htsjdk
- phased but no pq going adam->htsjdk
- phased but no ps going adam->htsjdk
- phased going adam->htsjdk
- no filter info going adam->htsjdk
- if filters applied, must set passed/failed going adam->htsjdk
- filters passed going adam->htsjdk
- if filters failed, must set filters failed going adam->htsjdk
- single filter failed going adam->htsjdk
- multiple filters failed going adam->htsjdk
- no fisher strand bias going adam->htsjdk
- extract fisher strand bias going adam->htsjdk
- no rms mapping quality going adam->htsjdk
- extract rms mapping quality going adam->htsjdk
- no mapping quality 0 reads going adam->htsjdk
- extract mapping quality 0 reads going adam->htsjdk
- no names set going htsjdk->adam
- single name set going htsjdk->adam
- multiple names set going htsjdk->adam
- no quality going htsjdk->adam
- quality set going htsjdk->adam
- no filters applied going htsjdk->adam
- filters applied and passed going htsjdk->adam
- single filter applied and failed going htsjdk->adam
- multiple filters applied and failed going htsjdk->adam
- no names set adam->htsjdk
- set a single name adam->htsjdk
- set multiple names adam->htsjdk
- no qual set adam->htsjdk
- qual is set adam->htsjdk
- no filters applied adam->htsjdk
- null filters applied adam->htsjdk
- filters passed adam->htsjdk
- if filter failed, must have filters adam->htsjdk
- single filter failed adam->htsjdk
- multiple filters failed adam->htsjdk
- no ancestral allele set going htsjdk->adam
- ancestral allele set going htsjdk->adam
- no dbsnp membership set going htsjdk->adam
- dbsnp membership set going htsjdk->adam
- no hapmap2 membership set going htsjdk->adam
- hapmap2 membership set going htsjdk->adam
- no hapmap3 membership set going htsjdk->adam
- hapmap3 membership set going htsjdk->adam
- no validated set going htsjdk->adam
- validated set going htsjdk->adam
- no 1000G membership set going htsjdk->adam
- 1000G membership set going htsjdk->adam
- not somatic going htsjdk->adam
- somatic going htsjdk->adam
- no allele count going htsjdk->adam
- single allele count going htsjdk->adam
- multiple allele counts going htsjdk->adam
- no allele frequency going htsjdk->adam
- single allele frequency going htsjdk->adam
- single allele frequency is +Inf going htsjdk->adam
- single allele frequency is -Inf going htsjdk->adam
- multiple allele frequencies going htsjdk->adam
- no CIGAR going htsjdk->adam
- single CIGAR going htsjdk->adam
- multiple CIGARs going htsjdk->adam
- no read depth going htsjdk->adam
- single read depth going htsjdk->adam
- multiple read depths going htsjdk->adam
- no forward read depth going htsjdk->adam
- single forward read depth going htsjdk->adam
- multiple forward read depths going htsjdk->adam
- no reverse read depth going htsjdk->adam
- single reverse read depth going htsjdk->adam
- multiple reverse read depths going htsjdk->adam
- no ancestral allele set adam->htsjdk
- ancestral allele set adam->htsjdk
- no dbsnp membership set adam->htsjdk
- dbsnp membership set adam->htsjdk
- no hapmap2 membership set adam->htsjdk
- hapmap2 membership set adam->htsjdk
- no hapmap3 membership set adam->htsjdk
- hapmap3 membership set adam->htsjdk
- no validated set adam->htsjdk
- validated set adam->htsjdk
- no 1000G membership set adam->htsjdk
- 1000G membership set adam->htsjdk
- no allele count set adam->htsjdk
- allele count set adam->htsjdk
- no allele frequency set adam->htsjdk
- allele frequency set adam->htsjdk
- no cigar set adam->htsjdk
- cigar set adam->htsjdk
- no read depth set adam->htsjdk
- read depth set adam->htsjdk
- read depth without reference read depth
- reference read depth without read depth
- no forward read depth set adam->htsjdk
- forward read depth set adam->htsjdk
- reference forward read depth without forward read depth
- forward read depth without reference forward read depth
- no reverse read depth set adam->htsjdk
- reverse read depth set adam->htsjdk
- reference reverse read depth without reverse read depth
- reverse read depth without reference reverse read depth
- VCF INFO attribute Number=0 Type=Flag adam->htsjdk
- VCF INFO attribute Number=4 Type=Flag adam->htsjdk unsupported, strict !!! IGNORED !!!
- VCF INFO attribute Number=1 Type=Integer adam->htsjdk
- VCF INFO attribute Number=4 Type=Integer adam->htsjdk
- VCF INFO attribute Number=A Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=String adam->htsjdk
- VCF INFO attribute Number=G Type=String adam->htsjdk not supported
- VCF INFO attribute Number=0 Type=Flag htsjdk->adam
- VCF INFO attribute Number=1 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Float htsjdk->adam
- VCF INFO attribute Number=A Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=String htsjdk->adam
- VCF INFO attribute Number=G Type=String htsjdk->adam not supported
- VCF FORMAT attribute Number=0 Type=Flag adam->htsjdk not supported
- VCF FORMAT attribute Number=1 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=4 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=A Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=String adam->htsjdk
- VCF FORMAT attribute Number=0 Type=Flag htsjdk->adam is not supported
- VCF FORMAT attribute Number=1 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Float htsjdk->adam
- VCF FORMAT attribute Number=A Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=String htsjdk->adam
- VCF FORMAT attribute Number=G Type=String htsjdk->adam
- respect end position for symbolic alts
FastqRecordConverterSuite:
- test read name suffix and index of pair must match
- test parseReadInFastq, read suffix removal
- test parseReadInFastq, read metadata removal
- test parseReadInFastq, read quality shorter than read length, padded with B
- test parseReadInFastq, read quality longer than read length 
- test parseReadInFastq, no read quality
- testing FastqRecordConverter.convertPair with valid input
- testing FastqRecordConverter.convertPair with 7-line invalid input
- testing FastqRecordConverter.convertPair with invalid input: first read length and qual don't match
- testing FastqRecordConverter.convertPair with invalid input: second read length and qual don't match
- testing FastqRecordConverter.convertFragment with valid input
- testing FastqRecordConverter.convertFragment with another valid input having /1, /2 suffixes
- testing FastqRecordConverter.convertFragment with invalid input: different read names
- testing FastqRecordConverter.convertRead with valid input
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setSecondOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair and setSecondOfPair both true
- testing FastqRecordConverter.convertRead with valid input, no qual, strict
- testing FastqRecordConverter.convertRead with valid input, no qual, not strict
AttributeSuite:
- test SAMTagAndValue parsing
- Attributes can be correctly re-encoded as text SAM tags
GFF3HeaderWriterSuite:
- write gff3 header pragma
BinQualitiesSuite:
- make a quality score bin
- can't have a quality score bin with negative score
- can't have a quality score bin with high score below low
- can't have a quality score bin with high score above 255
- can't have a quality score bin with score outside
- make a quality score bin from a string
- quality score bin must have exactly 3 elements
- quality score bin must be integers
- must define at least one bin
- build multiple bins
- rewrite quality scores for a read
- rewriting quality scores fails if bins overlap
- rewriting quality scores fails if base is out of bounds
- skip read if qualities are null
- rewrite a read
IndexedFastaFileSuite:
- correctly generates sequence dictionary from .dict file
- correctly gets sequence
- fails when fai index is not provided
2020-10-19 19:00:04 WARN  IndexedFastaFile:190 - Caught exception java.lang.NullPointerException when loading FASTA sequence dictionary. Using empty dictionary instead.
- passes when dict is not provided and ValidationStringency = LENIENT
SAMRecordConverterSuite:
- testing the fields in an Alignment obtained from a mapped samRecord conversion
- testing the fields in an Alignment obtained from an unmapped samRecord conversion
- '*' quality gets nulled out
- don't keep denormalized fields
ADAMContextSuite:
- ctr is accessible
- load from an empty directory
- sc.loadParquet should not fail on unmapped reads
- sc.loadParquet should not load a file without a type specified
- can read a small .SAM file
- can read a small .SAM file with a bad header with lenient validation
- loading a sam file with a bad header and strict stringency should fail
- can read a small .CRAM file
- can read a small .SAM with all attribute tag types
- can filter a .SAM file based on quality
- Can convert to phred
- Can convert from phred
- Can read a .gtf file
- Can read a .bed file
- Can read a BED 12 file
- Can read a .narrowPeak file
- Can read a .interval_list file
2020-10-19 19:00:06 WARN  VariantContextConverter:190 - Saw invalid info field java.lang.IllegalArgumentException: Multivalued flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">. Ignoring...
2020-10-19 19:00:06 WARN  VariantContextConverter:190 - Generating field extractor from header line INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag."> failed: java.lang.IllegalArgumentException: Multivalue flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">
- can read a small .vcf file with a validation issue
- can read a small .vcf file
2020-10-19 19:00:07 WARN  VCFInputFormat:218 - file:/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/2.12.8/test-classes/test.vcf.gz is not splittable, consider using block-compressed gzip (BGZF)
- can read a gzipped .vcf file
- can read a vcf file with an empty alt
- can read a BGZF gzipped .vcf file with .gz file extension
- can read a BGZF gzipped .vcf file with .bgz file extension
- can read a vcf file with a projection
- can read an uncompressed BCFv2.2 file !!! IGNORED !!!
- can read a BGZF compressed BCFv2.2 file !!! IGNORED !!!
- loadIndexedVcf with 1 ReferenceRegion
- loadIndexedVcf with multiple ReferenceRegions
- load block compressed interleaved fastq
- import records from interleaved FASTQ: 1
- import records from interleaved FASTQ: 2
- import records from interleaved FASTQ: 3
- import records from interleaved FASTQ: 4
- import block compressed single fastq
- import records from single ended FASTQ: 1
- import records from single ended FASTQ: 2
- import records from single ended FASTQ: 3
- import records from single ended FASTQ: 4
- filter on load using the filter2 API
- saveAsParquet with file path
- saveAsParquet with file path, block size, page size
- saveAsParquet with save args
- read a HLA fasta from GRCh38
- read a gzipped fasta file
- read a fasta file with comments, gaps, and translation stops
- loadIndexedBam with 1 ReferenceRegion
- loadIndexedBam with multiple ReferenceRegions
- loadIndexedBam with multiple ReferenceRegions and indexed bams
- loadIndexedBam with multiple ReferenceRegions and a directory of indexed bams
- loadIndexedBam should throw exception without an index file
- loadIndexedBam should work with indexed file with index naming format <filename>.bai
- loadIndexedBam glob should throw exception without an index file
- loadBam with a glob
- loadBam with a directory
- load vcf with a glob
- load vcf from a directory
- load gvcf which contains a multi-allelic row from a directory
- load and save gvcf which contains rows without likelihoods
- parse annotations for multi-allelic rows
- load parquet with globs
- bad glob should fail
- empty directory should fail
- can read a SnpEff-annotated .vcf file
- loadAlignments should not fail on single-end and paired-end fastq reads
- load queryname sorted sam as fragments
- load query grouped sam as fragments
- load paired fastq
- load paired fastq without cache
- load paired fastq as fragments
- load paired fastq as fragments without cache
- load HTSJDK sequence dictionary
- load Bedtools .genome file as sequence dictionary
- load Bedtools .genome.txt file as sequence dictionary
- load UCSC Genome Browser chromInfo.txt file as sequence dictionary
- load unrecognized file extension as sequence dictionary fails
- load BED features with Bedtools .genome file as sequence dictionary
- load BED features with Bedtools .genome file as sequence dictionary, no matching features
- convert program record
- load program record from sam file
- load alignments from data frame
- load features from data frame
- load fragments from data frame
- load genotypes from data frame with default header lines
- load genotypes from data frame with empty header lines
- load reads from data frame
- load sequences from data frame
- load slices from data frame
- load variant contexts from data frame with default header lines
- load variant contexts from data frame with empty header lines
- load variants from data frame with default header lines
- load variants from data frame with empty header lines
- load alignments with metadata from data frame
- load features with metadata from data frame
- load fragments with metadata from data frame
- load genotypes with metadata from data frame
- load variant contexts with metadata from data frame
- load variants with metadata from data frame
- read a fasta file with short sequences as sequences
- read a fasta file with long sequences as sequences
- read a fasta file with short sequences as slices
- read a fasta file with long sequences as slices
CycleCovariateSuite:
- compute covariates for an unpaired read on the negative strand
- compute covariates for a first-of-pair read on the negative strand
- compute covariates for a second-of-pair read on the negative strand
- compute covariates for an unpaired read on the positive strand
- compute covariates for a first-of-pair read on the positive strand
- compute covariates for a second-of-pair read on the positive strand
AlignmentConverterSuite:
- testing the fields in a converted ADAM Read
- converting a read with null quality is OK
- convert a read to fastq
- reverse complement reads when converting to fastq
- converting to fastq with unmapped reads where  read reverse complemented flag (Ox10) was NOT set
- converting to fastq with unmapped reads where reverse complemented flag (0x10) was set
- converting a fragment with no alignments should yield unaligned reads
- converting a fragment with alignments should restore the alignments
- read negative strand is propagated even when not mapped
ConsensusGeneratorFromKnownsSuite:
- no consensuses for empty target
- no consensuses for reads that don't overlap a target
- return a consensus for read overlapping a single target
RichCigarSuite:
- moving 2 bp from a deletion to a match operator
- moving 2 bp from a insertion to a match operator
- moving 1 base in a two element cigar
- move to start of read
- process right clipped cigar
- process left clipped cigar
- process cigar clipped on both ends
MDTaggingSuite:
- test adding MDTags over boundary
- test adding MDTags; reads span full contig
- test adding MDTags; reads start inside first fragment
- test adding MDTags; reads end inside last fragment
- test adding MDTags; reads start inside first fragment and end inside last fragment
- test adding MDTags; reads start and end in middle fragements
2020-10-19 19:01:13 WARN  BlockManager:69 - Putting block rdd_5_3 failed due to exception java.lang.Exception: Contig chr2 not found in reference map with keys: chr1.
2020-10-19 19:01:13 WARN  BlockManager:69 - Block rdd_5_3 could not be removed as it was not found on disk or in memory
2020-10-19 19:01:13 ERROR Executor:94 - Exception in task 3.0 in stage 2.0 (TID 11)
java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap.$anonfun$extract$1(ReferenceContigMap.scala:64)
	at scala.collection.immutable.Map$Map1.getOrElse(Map.scala:119)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$3(MDTagging.scala:76)
	at scala.Option$WithFilter.map(Option.scala:163)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$1(MDTagging.scala:71)
	at scala.collection.Iterator$$anon$10.next(Iterator.scala:459)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager.$anonfun$doPutIterator$1(BlockManager.scala:1371)
	at org.apache.spark.storage.BlockManager.org$apache$spark$storage$BlockManager$$doPut(BlockManager.scala:1298)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1362)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:1186)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:360)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:311)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:127)
	at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:446)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:449)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)
2020-10-19 19:01:13 WARN  TaskSetManager:69 - Lost task 3.0 in stage 2.0 (TID 11, 192.168.10.31, executor driver): java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap.$anonfun$extract$1(ReferenceContigMap.scala:64)
	at scala.collection.immutable.Map$Map1.getOrElse(Map.scala:119)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$3(MDTagging.scala:76)
	at scala.Option$WithFilter.map(Option.scala:163)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$1(MDTagging.scala:71)
	at scala.collection.Iterator$$anon$10.next(Iterator.scala:459)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager.$anonfun$doPutIterator$1(BlockManager.scala:1371)
	at org.apache.spark.storage.BlockManager.org$apache$spark$storage$BlockManager$$doPut(BlockManager.scala:1298)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1362)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:1186)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:360)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:311)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:127)
	at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:446)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:449)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)

2020-10-19 19:01:13 ERROR TaskSetManager:73 - Task 3 in stage 2.0 failed 1 times; aborting job
- try realigning a read on a missing contig, stringency == STRICT
2020-10-19 19:01:15 WARN  MDTagging:190 - Caught exception when processing read chr2: java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
- try realigning a read on a missing contig, stringency == LENIENT
FileExtensionsSuite:
- ends in gzip extension
- is a vcf extension
PhredUtilsSuite:
- convert low phred score to log and back
- convert high phred score to log and back
- convert overflowing phred score to log and back and clip
- convert negative zero log probability to phred and clip
- round trip log probabilities
ReadDatasetSuite:
- create a new read genomic dataset
- create a new read genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fastq
- save as single file fastq
- filter read genomic dataset by reference region
- broadcast region join reads and features
- shuffle region join reads and features
- convert reads to alignments
- convert reads to sequences
- convert reads to slices
AlignmentDatasetSuite:
- sorting reads
- unmapped reads go at the end when sorting
- coverage does not fail on unmapped reads
- computes coverage
- computes coverage with multiple samples
- merges adjacent records with equal coverage values
- sorting reads by reference index
- round trip from ADAM to SAM and back to ADAM produces equivalent Read values
- round trip with single CRAM file produces equivalent Read values
- round trip with sharded CRAM file produces equivalent Read values
- SAM conversion sets read mapped flag properly
- load long FASTQ reads
- load FASTQ with no bases
- convert malformed FASTQ (no quality scores) => SAM => well-formed FASTQ => SAM
- round trip from ADAM to FASTQ and back to ADAM produces equivalent Read values
- round trip from ADAM to paired-FASTQ and back to ADAM produces equivalent Read values
- writing a small file with tags should produce the expected result
- writing a small sorted file as SAM should produce the expected result
- writing unordered sam from unordered sam
- writing ordered sam from unordered sam
- write single sam file back
- write single bam file back
- saveAsParquet with save args, sequence dictionary, and read group dictionary
- load parquet to sql, save, re-read from avro
- load from sam, save as partitioned parquet, and re-read from partitioned parquet
- save as SAM format
- save as sorted SAM format
- save as BAM format
- save as sorted BAM format
- save as FASTQ format
- save as ADAM parquet format
- saveAsSam SAM format
- saveAsSam SAM format single file
- saveAsSam sorted SAM format single file
- saveAsSam BAM format
- saveAsSam BAM format single file
- saveAsSam sorted BAM format single file
- saveAsFastq
- saveAsFastq as single file
- saveAsFastq with original base qualities
- saveAsFastq sorted by read name
- saveAsFastq sorted by read name with original base qualities
2020-10-19 19:03:00 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsFastq paired FASTQ
2020-10-19 19:03:03 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq
2020-10-19 19:03:05 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq as single files
- don't lose any reads when piping as SAM
2020-10-19 19:03:19 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
2020-10-19 19:03:19 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
- lose all records when a command times out
- lose no records without a timeout
2020-10-19 19:03:42 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnnKuH0eo/spark-b2983af7-7d2e-4452-bedf-f7579a9e62a4/userFiles-dcb28c10-c89a-4b61-bb6d-d864518ea722/timeout.py) timed out after 5 seconds.
2020-10-19 19:03:42 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnnKuH0eo/spark-b2983af7-7d2e-4452-bedf-f7579a9e62a4/userFiles-dcb28c10-c89a-4b61-bb6d-d864518ea722/timeout.py) timed out after 5 seconds.
- lose some records when a command times out
- don't lose any reads when piping as SAM using java pipe
- don't lose any reads when piping as BAM
- don't lose any reads when piping fastq to sam
- can properly set environment variables inside of a pipe
- read vcf from alignment pipe !!! IGNORED !!!
- use broadcast join to pull down reads mapped to targets
- use broadcast join against to pull down reads mapped to targets
- use right outer broadcast join to pull down reads mapped to targets
- use right outer broadcast join against to pull down reads mapped to targets
- use shuffle join with feature spanning partitions
- use shuffle join to pull down reads mapped to targets
- use shuffle join with flankSize to pull down reads mapped close to targets
- use right outer shuffle join to pull down reads mapped to targets
- use left outer shuffle join to pull down reads mapped to targets
- use full outer shuffle join to pull down reads mapped to targets
- use shuffle join with group by to pull down reads mapped to targets
- use right outer shuffle join with group by to pull down reads mapped to targets
- cannot provide empty quality score bins
- cannot provide bins with a gap
- cannot provide overlapping bins
- binning quality scores in reads succeeds even if reads have no quality scores
- bin quality scores in reads
- union two read files together
- test k-mer counter
- test dataset based k-mer counter
- transform reads to slice genomic dataset
- transform reads to coverage genomic dataset
- transform reads to feature genomic dataset
- transform reads to fragment genomic dataset
- transform reads to genotype genomic dataset
loading /tmp/adamTestMvnnKuH0eo/TempSuite3418163045801415341.adam as parquet into RDD...
loading /tmp/adamTestMvnnKuH0eo/TempSuite2142776786432996726.adam as parquet into RDD...
- transform reads to variant genomic dataset
- cannot have a null processing step ID
- convert a processing description to htsjdk
- GenomicDataset.sort does not fail on unmapped reads
- GenomicDataset.sortLexicographically does not fail on unmapped reads
- left normalize indels
2020-10-19 19:04:59 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- running base recalibration with downsampling doesn't drop reads
- filter RDD bound alignments by MAPQ
- filter dataset bound alignments by MAPQ
- filter RDD bound unaligned alignments
- filter dataset bound unaligned alignments
- filter RDD bound unpaired alignments
- filter dataset bound unpaired alignments
- filter RDD bound duplicate alignments
- filter dataset bound duplicate alignments
- filter RDD bound alignments to primary alignments
- filter dataset bound alignments to primary alignments
- filter RDD bound alignments to read group
- filter dataset bound alignments to read group
- filter RDD bound alignments to read groups
- filter dataset bound alignments to read groups
- filter RDD bound alignments to sample
- filter dataset bound alignments to sample
- filter RDD bound alignments to samples
- filter dataset bound alignments to samples
- sort by read name
- transform dataset via java API
- convert alignments to reads
SmithWatermanSuite:
- gather max position from simple scoring matrix
- gather max position from irregular scoring matrix
- gather max position from irregular scoring matrix with deletions
- score simple alignment with constant gap
- score irregular scoring matrix
- score irregular scoring matrix with indel
- can unroll cigars correctly
- execute simple trackback
- execute trackback with indel
- run end to end smith waterman for simple reads
- run end to end smith waterman for short sequences with indel
- run end to end smith waterman for longer sequences with snp
- run end to end smith waterman for longer sequences with short indel
- run end to end smith waterman for shorter sequence in longer sequence
- run end to end smith waterman for shorter sequence in longer sequence, with indel
- smithWaterman - simple alignment
MdTagSuite:
- null md tag
- zero length md tag
- md tag with non-digit initial value
- md tag invalid base
- md tag, pure insertion
- md tag, pure insertion, test 2
- md tag pure insertion equality
- md tag equality and hashcode
- valid md tags
- get start of read with no mismatches or deletions
- get start of read with no mismatches, but with a deletion at the start
- get start of read with mismatches at the start
- get end of read with no mismatches or deletions
- check that mdtag and rich record return same end
- get end of read with no mismatches, but a deletion at end
- CIGAR with N operator
- CIGAR with multiple N operators
- CIGAR with P operators
- Get correct matches for mdtag with insertion
- Get correct matches for mdtag with mismatches and insertion
- Get correct matches for mdtag with insertion between mismatches
- Get correct matches for mdtag with intron between mismatches
- Get correct matches for mdtag with intron and deletion between mismatches
- Throw exception when number of deleted bases in mdtag disagrees with CIGAR
- Get correct matches for mdtag with mismatch, insertion and deletion
- Get correct matches for mdtag with mismatches, insertion and deletion
- Get correct matches for MDTag with mismatches and deletions
- Get correct matches base from MDTag and CIGAR with N
- get end of read with mismatches and a deletion at end
- get correct string out of mdtag with no mismatches
- get correct string out of mdtag with mismatches at start
- get correct string out of mdtag with deletion at end
- get correct string out of mdtag with mismatches at end
- get correct string out of complex mdtag
- check complex mdtag
- get gapped reference
- move a cigar alignment by two for a read
- rewrite alignment to all matches
- rewrite alignment to two mismatches followed by all matches
- rewrite alignment to include a deletion but otherwise all matches
- rewrite alignment to include an insertion at the start of the read but otherwise all matches
- create new md tag from read vs. reference, perfect match
- create new md tag from read vs. reference, perfect alignment match, 1 mismatch
- create new md tag from read vs. reference, alignment with deletion
- create new md tag from read vs. reference, alignment with insert
- handle '=' and 'X' operators
- CIGAR/MD tag mismatch should cause errors
GenomicDatasetSuite:
- processing a command that is the spark root directory should return an absolute path
- processing a command that is just a single word should do nothing
- processing a command should handle arguments that include spaces
- processing a command that is a single substitution should succeed
- processing a command that is multiple words should split the string
- process a command that is multiple words with a replacement
- process a command that is multiple words with multiple replacements
ParallelFileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
- get the size of several files
- block size must be positive and non-zero when trying to merge files
- must provide files to merge
- if two files are both below the block size, they should merge into one shard
- merge two files where one is greater than the block size
- merge a sharded sam file
- merge a sharded bam file
- merge a sharded cram file
- can't turn a negative index into a path
- generate a path from an index
IndelTableSuite:
- check for indels in a region with known indels
- check for indels in a contig that doesn't exist
- check for indels in a region without known indels
- build indel table from rdd of variants
SnpTableSuite:
- create an empty snp table
- create a snp table from variants on multiple contigs
- create a snp table from a larger set of variants
- perform lookups on multi-contig snp table
- perform lookups on larger snp table
RealignIndelsSuite:
- map reads to targets
- checking mapping to targets for artificial reads
- checking alternative consensus for artificial reads
- checking extraction of reference from reads
- checking realigned reads for artificial input
- checking realigned reads for artificial input with reference file
- checking realigned reads for artificial input using knowns
- checking realigned reads for artificial input using knowns and reads
- skip realigning reads if target is highly covered
- skip realignment if target is an insufficient LOD improvement
- realign reads to an insertion
- test mismatch quality scoring
- test mismatch quality scoring for no mismatches
- test mismatch quality scoring for offset
- test mismatch quality scoring with early exit
- test mismatch quality scoring after unpacking read
- we shouldn't try to realign a region with no target
- we shouldn't try to realign reads with no indel evidence
- test OP and OC tags
- realign a read with an insertion that goes off the end of the read
- if realigning a target doesn't improve the LOD, don't drop reads
- extract seq/qual from a read with no clipped bases
- extract seq/qual from a read with clipped bases at start
- extract seq/qual from a read with clipped bases at end
- if unclip is selected, don't drop base when extracting from a read with clipped bases
- get cigar and coordinates for read that spans indel, no clipped bases
- get cigar and coordinates for read that spans deletion, clipped bases at start
- get cigar and coordinates for read that falls wholly before insertion
- get cigar and coordinates for read that falls wholly after insertion
- get cigar and coordinates for read that falls wholly after deletion
- get cigar and coordinates for read that partially spans insertion, no clipped bases
- get cigar and coordinates for read that partially spans insertion, clipped bases at end
- get cigar and coordinates for read that partially spans insertion, clipped bases both ends
BaseQualityRecalibrationSuite:
2020-10-19 19:05:56 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- BQSR Test Input #1 w/ VCF Sites without caching
2020-10-19 19:06:05 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- BQSR Test Input #1 w/ VCF Sites with caching
2020-10-19 19:06:14 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- BQSR Test Input #1 w/ VCF Sites with serialized caching
DinucCovariateSuite:
- computing dinucleotide pairs for a single base sequence should return (N,N)
- compute dinucleotide pairs for a string of all valid bases
- compute dinucleotide pairs for a string with an N
- compute covariates for a read on the negative strand
- compute covariates for a read on the positive strand
SequenceDictionarySuite:
- Convert from sam sequence record and back
- Convert from SAM sequence dictionary file (with extra fields)
- merge into existing dictionary
- Convert from SAM sequence dictionary and back
- Can retrieve sequence by name
- SequenceDictionary's with same single element are equal
- SequenceDictionary's with same two elements are equals
- SequenceDictionary's with different elements are unequal
- SequenceDictionaries with same elements in different order are compatible
- isCompatible tests equality on overlap
- The addition + works correctly
- The append operation ++ works correctly
- ContainsRefName works correctly for different string types
- Apply on name works correctly for different String types
- convert from sam sequence record and back
- convert from sam sequence dictionary and back
- conversion to sam sequence dictionary has correct sort order
- load sequence dictionary from VCF file
- empty sequence dictionary must be empty
- test filter to reference name
- test filter to reference names
- test filter to reference name by function
GenomicPositionPartitionerSuite:
- partitions the UNMAPPED ReferencePosition into the top partition
- if we do not have a contig for a record, we throw an IAE
- partitioning into N pieces on M total sequence length, where N > M, results in M partitions
- correctly partitions a single dummy sequence into two pieces
- correctly counts cumulative lengths
- correctly partitions positions across two dummy sequences
- test that we can range partition ADAMRecords
- test that we can range partition ADAMRecords indexed by sample
- test that simple partitioning works okay on a reasonable set of ADAMRecords
- test indexed ReferencePosition partitioning works on a set of indexed ADAMRecords
CoverageSuite:
- Convert to coverage from valid Feature
- Convert to coverage from valid Feature with sampleId
- Convert to coverage from Feature with null/empty contigName fails with correct error
- Convert to coverage from Feature with no start/end position fails with correct error
- Convert to coverage from Feature with no score fails with correct error
InnerTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
- Multiple reference regions do not throw exception
VariantDatasetSuite:
- union two variant genomic datasets together
- round trip to parquet
- save and reload from partitioned parquet
- use broadcast join to pull down variants mapped to targets
- use right outer broadcast join to pull down variants mapped to targets
- use shuffle join to pull down variants mapped to targets
- use right outer shuffle join to pull down variants mapped to targets
- use left outer shuffle join to pull down variants mapped to targets
- use full outer shuffle join to pull down variants mapped to targets
- use shuffle join with group by to pull down variants mapped to targets
- use right outer shuffle join with group by to pull down variants mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2020-10-19 19:06:40 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform variants to slice genomic dataset
- transform variants to coverage genomic dataset
- transform variants to feature genomic dataset
- transform variants to fragment genomic dataset
- transform variants to read genomic dataset
- transform variants to genotype genomic dataset
- transform variants to variant context genomic dataset
- filter RDD bound variants to filters passed
- filter dataset bound variants to filters passed
- filter RDD bound variants by quality
- filter dataset bound variants by quality
- filter RDD bound variants by read depth
- filter dataset bound variants by read depth
- filter RDD bound variants by reference read depth
- filter dataset bound variants by reference read depth
- filter RDD bound single nucleotide variants
- filter dataset bound single nucleotide variants
- filter RDD bound multiple nucleotide variants
- filter dataset bound multiple nucleotide variants
- filter RDD bound indel variants
- filter dataset bound indel variants
- filter RDD bound variants to single nucleotide variants
- filter dataset bound variants to single nucleotide variants
- filter RDD bound variants to multiple nucleotide variants
- filter dataset bound variants to multiple nucleotide variants
- filter RDD bound variants to indel variants
- filter dataset bound variants to indel variants
- transform dataset via java API
Run completed in 9 minutes, 13 seconds.
Total number of tests run: 1175
Suites: completed 68, aborted 0
Tests: succeeded 1175, failed 0, canceled 0, ignored 5, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-core-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark3_2.12 ---
[INFO] Modified 2 of 204 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-core-spark3_2.12 ---
[WARNING] Skipping SCoverage execution - unsupported Scala version "2.12.8"
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 140 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/2.12.8/classes at 1603159639549
[WARNING] warning: there were 21 deprecation warnings
[WARNING] warning: there were 31 deprecation warnings (since 0.21.0)
[WARNING] warning: there was one deprecation warning (since 1.0.6)
[WARNING] warning: there was one deprecation warning (since 2.11.0)
[WARNING] warning: there were 175 deprecation warnings (since 2.12.0)
[WARNING] warning: there was one deprecation warning (since 2.12.7)
[WARNING] warning: there were 230 deprecation warnings in total; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] 8 warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 24 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 152 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark3_2.12 ---
Discovery starting.
Discovery completed in 1 second, 695 milliseconds.
Run starting. Expected test count is: 1175
RepairPartitionsSuite:
- don't pull from the first partition
- properly handle pulling from an empty iterator
- gets a single read from the partition if there are no other reads in the pair
- gets all the reads from a pair from the start of a partition
- properly handle dropping from an empty iterator
- don't drop from the first partition
- drop a single read from the partition if there are no other reads in the pair
- drops all the reads from a pair from the start of a partition
- only append to the first partition
- drop a single read from the partition and append read when in the middle
- drop reads from the start and don't append when in the last partition
- can't have more records than number of partitions
- unroll array for broadcast
2020-10-19 19:07:47 WARN  Utils:69 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0)
2020-10-19 19:07:47 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-10-19 19:07:47 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- move pairs around an rdd
FlagStatSuite:
- Standard FlagStat test
ModPartitionerSuite:
- report number of partitions correctly
- partition a number that is lower than the number of partitions and positive
- partition a number that is greater than the number of partitions and positive
- partition a number that is lower than the number of partitions and negative
- partition a number that is greater than the number of partitions and negative
- fire an exception if input is not an integer
TwoBitFileSuite:
- correctly read sequence from .2bit file
- correctly return masked sequences from .2bit file
- correctly return Ns from .2bit file
- correctly calculates sequence dictionary
NonoverlappingRegionsSuite:
- alternating returns an alternating seq of items
- Single region returns itself
- Two adjacent regions will be merged
- Nonoverlapping regions will all be returned
- Many overlapping regions will all be merged
- ADAMRecords return proper references
ReferencePositionSuite:
- create reference position from mapped read
- create reference position from variant
- create reference position from genotype
- create reference position from variant starting at vcf 0
- create reference position from genotype starting at vcf 0
ConsensusGeneratorFromReadsSuite:
- checking search for consensus list for artificial reads
FragmentConverterSuite:
- build a fragment collector and convert to a read
- if a fragment isn't associated with a contig, don't get a fragment collector
- convert an rdd of discontinuous fragments, all from the same contig
- convert an rdd of contiguous fragments, all from the same contig
- convert an rdd of varied fragments from multiple contigs
FileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
RichAlignmentSuite:
- Unclipped Start
- Unclipped End
- tags contains optional fields
- read overlap unmapped read
- read overlap reference position
- read overlap same position different contig
SingleReadBucketSuite:
- convert unmapped pair to fragment
- convert proper pair to fragment
- convert read pair to fragment with first of pair chimeric read
RecalibrationTableSuite:
- look up quality scores in table
FlankSlicesSuite:
- don't put flanks on non-adjacent slices
- put flanks on adjacent slices
InterleavedFastqInputFormatSuite:
- interleaved FASTQ hadoop reader: interleaved_fastq_sample1.ifq->interleaved_fastq_sample1.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample2.ifq->interleaved_fastq_sample2.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample3.ifq->interleaved_fastq_sample3.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample4.ifq->interleaved_fastq_sample4.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample5.ifq->interleaved_fastq_sample5.ifq.output
TreeRegionJoinSuite:
- run a join between data on a single contig
ReferenceRegionSuite:
- cannot create an empty predicate
- parse empty string throws IllegalArgumentException
- parse contigName only string into reference regions
- parse to end strings into reference regions
- parse string into reference regions
- contains(: ReferenceRegion)
- contains(: ReferencePosition)
- merge
- overlaps and covers
- overlapsBy and coversBy
- distance(: ReferenceRegion)
- distance(: ReferencePosition)
- unstrandedDistance
- subtract fails on non-overlapping and non-covering regions
- subtract
- create region from unmapped read fails
- create region from read with null alignment positions fails
- create stranded region from unmapped read fails
- create stranded region from read with null alignment positions fails
- create stranded region from read with null alignment strand fails
- create stranded region from read on forward strand
- create stranded region from read on reverse strand
- create region from mapped read contains read start and end
- validate that adjacent regions can be merged
- validate that non-adjacent regions cannot be merged
- validate that nearby regions can be merged
- validate that non-nearby regions cannot be merged
- compute convex hull of two sets
- region name is sanitized when creating region from read
- intersection fails on non-overlapping regions
- intersection fails when minOverlap is not met
- compute intersection
- overlap tests for oriented reference region
- check the width of a reference region
- make a reference region for a variant or genotype
- make a reference region for a variant or genotype starting at VCF 0
- uniformly pad a reference region
- uniformly pad a reference region into negative coordinate space, ensure non negative start
- unevenly pad a reference region
- unevenly pad a reference region into negative coordinate space, ensure non negative start
- can build an open ended reference region
- can build an open ended reference region with strand
- can build a reference region with an open start position
- can build a reference region with an open start position with strand
- can build a reference region that covers the entirety of a contig
- can build a reference region that covers the entirety of a contig with strand
- convert a genotype and then get the reference region
- create region from feature with null alignment positions fails
- create stranded region from feature with null alignment positions fails
- create stranded region from feature with null alignment strand fails
- create stranded region from feature on forward strand
- create stranded region from feature on reverse strand
CoverageDatasetSuite:
- correctly saves coverage
- can read a bed file to coverage
- correctly filters coverage with predicate
- keeps sample metadata
- can read a bed file with multiple samples to coverage
- correctly flatmaps coverage without aggregated bins
- correctly flatmaps coverage with aggregated bins
- collapses coverage records in one partition
- approximately collapses coverage records in multiple partitions
2020-10-19 19:08:04 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform coverage to slice genomic dataset
- transform coverage to feature genomic dataset
2020-10-19 19:08:06 WARN  package:69 - Truncated the string representation of a plan since it was too large. This behavior can be adjusted by setting 'spark.sql.debug.maxToStringFields'.
- transform coverage to fragment genomic dataset
- transform coverage to read genomic dataset
- transform coverage to genotype genomic dataset
- transform coverage to variant genomic dataset
- transform coverage to variant context genomic dataset
- copy coverage rdd
- copy coverage dataset
- copy coverage rdd without sequence dictionary
- copy coverage dataset without sequence dictionary
- transform dataset via java API
RecalibratorSuite:
- don't replace quality if quality was null
- if no covariates, return alignment
- skip recalibration if base is below quality threshold
- recalibrate changed bases above quality threshold
SliceDatasetSuite:
- create a new slice genomic dataset
- create a new slice genomic dataset with sequence dictionary
- merge slices into a sequence genomic dataset
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert slices to reads
- convert slices to sequences
GenotypeDatasetSuite:
- union two genotype genomic datasets together
- round trip to parquet
- round trip to partitioned parquet
- use broadcast join to pull down genotypes mapped to targets
- use right outer broadcast join to pull down genotypes mapped to targets
- use shuffle join to pull down genotypes mapped to targets
- use right outer shuffle join to pull down genotypes mapped to targets
- use left outer shuffle join to pull down genotypes mapped to targets
- use full outer shuffle join to pull down genotypes mapped to targets
- use shuffle join with group by to pull down genotypes mapped to targets
- use right outer shuffle join with group by to pull down genotypes mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2020-10-19 19:08:23 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform genotypes to slice genomic dataset
- transform genotypes to coverage genomic dataset
- transform genotypes to feature genomic dataset
- transform genotypes to fragment genomic dataset
- transform genotypes to read genomic dataset
- transform genotypes to variant genomic dataset
- transform genotypes to variant context genomic dataset
- loading genotypes then converting to variants yields same output as loading variants
- filter RDD bound genotypes to genotype filters passed
- filter dataset bound genotypes to genotype filters passed
- filter RDD bound genotypes by genotype quality
- filter dataset bound genotypes by genotype quality
- filter RDD bound genotypes by read depth
- filter dataset bound genotypes by read depth
- filter RDD bound genotypes by alternate read depth
- filter dataset bound genotypes by alternate read depth
- filter RDD bound genotypes by reference read depth
- filter dataset bound genotypes by reference read depth
- filter RDD bound genotypes by sample
- filter dataset bound genotypes by sample
- filter RDD bound genotypes by samples
- filter dataset bound genotypes by samples
- filter RDD bound no call genotypes
- filter dataset no call genotypes
- round trip gVCF END attribute without nested variant annotations rdd bound
- round trip gVCF END attribute without nested variant annotations dataset bound
- round trip gVCF END attribute with nested variant annotations rdd bound
- round trip gVCF END attribute with nested variant annotations dataset bound
- transform dataset via java API
FragmentDatasetSuite:
- don't lose any reads when piping interleaved fastq to sam
- don't lose any reads when piping tab5 to sam
- don't lose any reads when piping tab6 to sam
- use broadcast join to pull down fragments mapped to targets
- use right outer broadcast join to pull down fragments mapped to targets
- use shuffle join to pull down fragments mapped to targets
- use right outer shuffle join to pull down fragments mapped to targets
- use left outer shuffle join to pull down fragments mapped to targets
- use full outer shuffle join to pull down fragments mapped to targets
- use shuffle join with group by to pull down fragments mapped to targets
- use right outer shuffle join with group by to pull down fragments mapped to targets
- bin quality scores in fragments
- union two genomic datasets of fragments together
- load parquet to sql, save, re-read from avro
- transform fragments to slice genomic dataset
- transform fragments to coverage genomic dataset
- transform fragments to feature genomic dataset
- transform fragments to read genomic dataset
- transform fragments to genotype genomic dataset
- transform fragments to variant genomic dataset
- transform fragments to variant context genomic dataset
- paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names as fragments
- transform dataset via java API
- dataset and rdd conversion to alignments are equivalent
SingleFastqInputFormatSuite:
- FASTQ hadoop reader: fastq_sample1.fq->single_fastq_sample1.fq.output
- FASTQ hadoop reader: fastq_sample2.fq->single_fastq_sample2.fq.output
- FASTQ hadoop reader: fastq_sample3.fq->single_fastq_sample3.fq.output
- FASTQ hadoop reader: fastq_sample4.fq->single_fastq_sample4.fq.output
VariantContextDatasetSuite:
- load a gvcf with a missing info field set to .
- union two variant context genomic datasets together
- can write, then read in .vcf file
- can write as a single file via simple saveAsVcf method, then read in .vcf file
- can write as a single file via full saveAsVcf method, then read in .vcf file
- transform a vcf file with bad header
- read a vcf file with multi-allelic variants to split
- support VCFs with +Inf/-Inf float values
- support VCFs with `nan` instead of `NaN` float values
- don't lose any variants when piping as VCF
- pipe works with empty partitions
- don't lose any non-default VCF header lines or attributes when piping as VCF
- save a file sorted by contig index
- save a lexicographically sorted file
- save a multiallelic gvcf !!! IGNORED !!!
- test metadata
- save sharded bgzip vcf
- save bgzip vcf as single file
- can't save file with non-vcf extension
- transform variant contexts to slice genomic dataset
- transform variant contexts to coverage genomic dataset
- transform variant contexts to feature genomic dataset
- transform variant contexts to fragment genomic dataset
- transform variant contexts to read genomic dataset
- transform variant contexts to genotype genomic dataset
- transform variant contexts to variant genomic dataset
- save and reload from partitioned parquet
- transform dataset via java API
ConsensusSuite:
- test the insertion of a consensus insertion into a reference
- test the insertion of a consensus deletion into a reference
- inserting empty consensus returns the reference
SequenceDatasetSuite:
- create a new sequence genomic dataset
- create a new sequence genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert sequences to reads
- convert sequences to slices
- slice sequences to a maximum length
- slice sequences shorter than maximum length
- filter sequences by overlapping region
- filter sequences failing to overlap region
- filter sequences by overlapping regions
- filter sequences failing to overlap regions
- slice sequences overlapping a smaller region
- slice sequences overlapping a larger region
- slice sequences failing to overlap a region
- slice sequences overlapping smaller regions
- slice sequences overlapping larger regions
- slice sequences failing to overlap regions
AttributeUtilsSuite:
- parseTags returns a reasonable set of tagStrings
- parseTags works with NumericSequence tagType
- empty string is parsed as zero tagStrings
- incorrectly formatted tag throws an exception
- string tag with a ':' in it is correctly parsed
- oq string tag with many ':' in it is correctly parsed
- oq string tag with a ',' in it is correctly parsed
- if a tag is an array but doesn't define it's format, throw
MarkDuplicatesSuite:
- single read
- reads at different positions
- reads at the same position
- reads at the same position with clipping
- reads on reverse strand
- unmapped reads
- read pairs
- read pairs with fragments
- quality scores
- read pairs that cross chromosomes
- single fragment
- fragments at different positions
- fragments at the same position
- fragments at the same position with clipping
- fragments on reverse strand
- unmapped fragments
- read pairs as fragments
- read pairs with fragments as fragments
- chimeric fragments
- inverse pairs
- supplemental reads
TranscriptEffectConverterSuite:
- parse empty transcript effect
- parse empty transcript effect strict validation stringency
- parse invalid transcript effect
- parse invalid transcript effect strict validation stringency
- parse transcript effect
- parse empty list VCF ANN attribute
- parse empty list VCF ANN attribute strict validation stringency
- parse empty string VCF ANN attribute
- parse empty string VCF ANN attribute strict validation stringency
- parse invalid VCF ANN attribute
- parse invalid VCF ANN attribute strict validation stringency
- parse VCF ANN attribute with one transcript effect
- parse VCF ANN attribute with multiple transcript effects
- convert to transcript effect from null VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from empty string VCF ANN attribute in variant context
- convert to transcript effect from empty string VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from invalid VCF ANN attribute in variant context
- convert to transcript effect from invalid VCF ANN attribute in variant context strict validation stringency
2020-10-19 19:09:15 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid number in variant context lenient validation stringency
2020-10-19 19:09:15 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context lenient validation stringency
- convert to transcript effect from VCF ANN attribute with invalid number in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute in variant context different alt allele
- convert to transcript effect from VCF ANN attribute in variant context same alt allele
- convert to transcript effect from VCF ANN attribute in variant context multiple effects same alt allele
- convert transcript effect to VCF ANN attribute value
- convert transcript effect with null fields to VCF ANN attribute value
2020-10-19 19:09:15 WARN  TranscriptEffectConverter$:190 - Incorrect fractional value ?/2, missing numerator
- convert transcript effect with incorrect fractional value to VCF ANN attribute value
IndelRealignmentTargetSuite:
- checking simple realignment target
- creating simple target from read with deletion
- creating simple target from read with insertion
- joining simple realignment targets on same chr
- joining simple realignment targets on different chr throws exception
- creating targets from three intersecting reads, same indel
- creating targets from three intersecting reads, two different indel
- creating targets from two disjoint reads
- creating targets for artificial reads: one-by-one
- creating targets for artificial reads: all-at-once (merged)
- creating indel targets for mason reads
- additional indel targets taken from consensus generator
NormalizationUtilsSuite:
- cannot move an indel left if there are no bases to it's left
- move a simple indel to farthest position left until bases run out
- move a simple indel to farthest position left, past length of indel
- cannot move a left normalized indel in a short tandem repeat
- move an indel in a short tandem repeat
- move an indel in a short tandem repeat of more than 2 bases, where shift is not an integer multiple of repeated sequence length
- moving a simple read with single deletion that cannot shift
- shift an indel left by 0 in a cigar
- shift an indel left by 1 in a cigar
- do not left align a complex read which is already left aligned
ReadGroupDictionarySuite:
- simple conversion to and from sam read group
- sample name must be set
- simple equality checks
- get samples from read group dictionary
- empty read group is empty
- merging a dictionary with itself should work
- round trip a record with all attributes set
RightOuterTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
InnerShuffleRegionJoinSuite:
- Overlapping reference regions
- Multiple reference regions do not throw exception
FeatureDatasetSuite:
- round trip GTF format
- save GTF as GFF3 format
- save GTF as BED format
- save GTF as IntervalList format
- save GTF as NarrowPeak format
- save GFF3 as GTF format
- save GFF3 as BED format
- save GFF3 as IntervalList format
- save GFF3 as NarrowPeak format
- round trip GFF3 format
- ignore FASTA sequence in GFF3 file
- save BED as GTF format
- save BED as GFF3 format
- save BED as IntervalList format
- save BED as NarrowPeak format
- round trip BED6 format
- keeps sample metadata
- round trip BED12 format
- save to UCSC BED format
- save IntervalList as GTF format
- save IntervalList as GFF3 format
- save IntervalList as BED format
- save IntervalList as IntervalList format
- save IntervalList as NarrowPeak format
- round trip IntervalList format
- save NarrowPeak as GTF format
- save NarrowPeak as GFF3 format
- save NarrowPeak as BED format
- save NarrowPeak as IntervalList format
- save NarrowPeak as NarrowPeak format
- round trip NarrowPeak format
- sort by reference
- sort by reference and feature fields
- sort gene features by reference and gene structure
- sort transcript features by reference and gene structure
- sort exon features by reference and gene structure
- sort intron features by reference and gene structure
- correctly flatmaps CoverageDataset from FeatureDataset
- use broadcast join to pull down features mapped to targets
- use right outer broadcast join to pull down features mapped to targets
- use shuffle join to pull down features mapped to targets
- use right outer shuffle join to pull down features mapped to targets
- use left outer shuffle join to pull down features mapped to targets
- use full outer shuffle join to pull down features mapped to targets
- use shuffle join with group by to pull down features mapped to targets
- use right outer shuffle join with group by to pull down features mapped to targets
- union two feature rdds together
- obtain sequence dictionary contig lengths from header in IntervalList format
- don't lose any features when piping as BED format
- don't lose any features when piping as GTF format
- don't lose any features when piping as GFF3 format
- don't lose any features when piping as NarrowPeak format
- load parquet to sql, save, re-read from avro
- load partitioned parquet to sql, save, re-read from avro
2020-10-19 19:09:37 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform features to slice genomic dataset
- transform features to coverage genomic dataset
- transform features to fragment genomic dataset
- transform features to read genomic dataset
- transform features to genotype genomic dataset
- transform features to variant genomic dataset
- transform features to variant context genomic dataset
- filter RDD bound features by feature type
- filter dataset bound features by feature type
- filter RDD bound features by feature types
- filter dataset bound features by feature types
- filter RDD bound features by gene
- filter dataset bound features by gene
- filter RDD bound features by genes
- filter dataset bound features by genes
- filter RDD bound features by transcript
- filter dataset bound features by transcript
- filter RDD bound features by transcripts
- filter dataset bound features by transcripts
- filter RDD bound features by exon
- filter dataset bound features by exon
- filter RDD bound features by exons
- filter dataset bound features by exons
- filter RDD bound features by score
- filter dataset bound features by score
- filter RDD bound features by parent
- filter dataset bound features by parent
- filter RDD bound features by parents
- filter dataset bound features by parents
- filter RDD bound features by attribute
- filter dataset bound features by attribute
- transform dataset via java API
AlphabetSuite:
- test size of a case-sensitive alphabet
- test apply of a case-sensitive alphabet
- test reverse complement of a case-sensitive alphabet
- test exact reverse complement of a case-sensitive alphabet
- test size of a case-insensitive alphabet
- test apply of a case-insensitive alphabet
- test reverse complement of a case-insensitive alphabet
- test exact reverse complement of a case-insensitive alphabet
- DNA alphabet
- map unknown bases to N
SortedGenomicDatasetSuite:
- testing that partition and sort provide correct outputs
- testing copartition maintains or adds sort
- testing that we don't drop any data on the right side even though it doesn't map to a partition on the left
- testing that sorted shuffleRegionJoin matches unsorted
- testing that sorted fullOuterShuffleRegionJoin matches unsorted
- testing that sorted rightOuterShuffleRegionJoin matches unsorted
- testing that sorted leftOuterShuffleRegionJoin matches unsorted
- testing that we can persist the sorted knowledge
VariantContextConverterSuite:
- Convert htsjdk site-only SNV to ADAM
- Convert somatic htsjdk site-only SNV to ADAM
- Convert htsjdk site-only CNV to ADAM
- Convert htsjdk SNV w/ genotypes w/ phase information to ADAM
- Convert htsjdk SNV with different variant filters to ADAM
- Convert htsjdk SNV with different genotype filters to ADAM
- Convert ADAM site-only SNV to htsjdk
- Convert ADAM SNV w/ genotypes to htsjdk
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with strict validation
2020-10-19 19:09:51 WARN  VariantContextConverter:190 - Applying annotation extraction function org.bdgenomics.adam.converters.VariantContextConverter$$Lambda$694/711112124@6b2f5b21 to {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null} failed with java.lang.IllegalArgumentException: requirement failed: Illegal strand bias components length. Must be empty or 4. In:
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with lenient validation
{"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null}.
- Convert htsjdk multi-allelic sites-only SNVs to ADAM
- Convert htsjdk multi-allelic SNVs to ADAM and back to htsjdk
- Convert gVCF reference records to ADAM
- Convert htsjdk variant context with no IDs to ADAM
- Convert htsjdk variant context with one ID to ADAM
- Convert htsjdk variant context with multiple IDs to ADAM
- Convert ADAM variant context with no names to htsjdk
- Convert ADAM variant context with one name to htsjdk
- Convert ADAM variant context with multiple names to htsjdk
- Convert ADAM variant context with null filters applied to htsjdk
- Convert ADAM variant context with no filters applied to htsjdk
- Convert ADAM variant context with passing filters to htsjdk
- Convert ADAM variant context with failing filters to htsjdk
- no phasing set going htsjdk->adam
- phased but no phase set info going htsjdk->adam
- set phase set and extract going htsjdk->adam
- no allelic depth going htsjdk->adam
- set allelic depth going htsjdk->adam
- no gt read depth going htsjdk->adam
- extract gt read depth going htsjdk->adam
- no min gt read depth going htsjdk->adam
- extract min gt read depth going htsjdk->adam
- no genotype quality going htsjdk->adam
- extract genotype quality going htsjdk->adam
- no phred likelihood going htsjdk->adam
- extract phred likelihoods going htsjdk->adam
- no strand bias info going htsjdk->adam
- extract strand bias info going htsjdk->adam
- no filters going htsjdk->adam
- filters passed going htsjdk->adam
- extract single filter going htsjdk->adam
- extract multiple filters going htsjdk->adam
- no fisher strand bias going htsjdk->adam
- extract fisher strand bias going htsjdk->adam
- no rms mapping quality going htsjdk->adam
- extract rms mapping quality going htsjdk->adam
- no mq0 going htsjdk->adam
- extract mq0 going htsjdk->adam
- no gt read depth going adam->htsjdk
- extract gt read depth going adam->htsjdk
- throw iae if missing one component of gt read depth going adam->htsjdk
- no depth going adam->htsjdk
- extract depth going adam->htsjdk
- no min depth going adam->htsjdk
- extract min depth going adam->htsjdk
- no quality going adam->htsjdk
- extract quality going adam->htsjdk
- no genotype likelihoods going adam->htsjdk
- extract genotype likelihoods going adam->htsjdk
- no strand bias going adam->htsjdk
- malformed strand bias going adam->htsjdk
- extract strand bias going adam->htsjdk
- no phasing info going adam->htsjdk
- unphased going adam->htsjdk
- phased but no ps/pq going adam->htsjdk
- phased but no pq going adam->htsjdk
- phased but no ps going adam->htsjdk
- phased going adam->htsjdk
- no filter info going adam->htsjdk
- if filters applied, must set passed/failed going adam->htsjdk
- filters passed going adam->htsjdk
- if filters failed, must set filters failed going adam->htsjdk
- single filter failed going adam->htsjdk
- multiple filters failed going adam->htsjdk
- no fisher strand bias going adam->htsjdk
- extract fisher strand bias going adam->htsjdk
- no rms mapping quality going adam->htsjdk
- extract rms mapping quality going adam->htsjdk
- no mapping quality 0 reads going adam->htsjdk
- extract mapping quality 0 reads going adam->htsjdk
- no names set going htsjdk->adam
- single name set going htsjdk->adam
- multiple names set going htsjdk->adam
- no quality going htsjdk->adam
- quality set going htsjdk->adam
- no filters applied going htsjdk->adam
- filters applied and passed going htsjdk->adam
- single filter applied and failed going htsjdk->adam
- multiple filters applied and failed going htsjdk->adam
- no names set adam->htsjdk
- set a single name adam->htsjdk
- set multiple names adam->htsjdk
- no qual set adam->htsjdk
- qual is set adam->htsjdk
- no filters applied adam->htsjdk
- null filters applied adam->htsjdk
- filters passed adam->htsjdk
- if filter failed, must have filters adam->htsjdk
- single filter failed adam->htsjdk
- multiple filters failed adam->htsjdk
- no ancestral allele set going htsjdk->adam
- ancestral allele set going htsjdk->adam
- no dbsnp membership set going htsjdk->adam
- dbsnp membership set going htsjdk->adam
- no hapmap2 membership set going htsjdk->adam
- hapmap2 membership set going htsjdk->adam
- no hapmap3 membership set going htsjdk->adam
- hapmap3 membership set going htsjdk->adam
- no validated set going htsjdk->adam
- validated set going htsjdk->adam
- no 1000G membership set going htsjdk->adam
- 1000G membership set going htsjdk->adam
- not somatic going htsjdk->adam
- somatic going htsjdk->adam
- no allele count going htsjdk->adam
- single allele count going htsjdk->adam
- multiple allele counts going htsjdk->adam
- no allele frequency going htsjdk->adam
- single allele frequency going htsjdk->adam
- single allele frequency is +Inf going htsjdk->adam
- single allele frequency is -Inf going htsjdk->adam
- multiple allele frequencies going htsjdk->adam
- no CIGAR going htsjdk->adam
- single CIGAR going htsjdk->adam
- multiple CIGARs going htsjdk->adam
- no read depth going htsjdk->adam
- single read depth going htsjdk->adam
- multiple read depths going htsjdk->adam
- no forward read depth going htsjdk->adam
- single forward read depth going htsjdk->adam
- multiple forward read depths going htsjdk->adam
- no reverse read depth going htsjdk->adam
- single reverse read depth going htsjdk->adam
- multiple reverse read depths going htsjdk->adam
- no ancestral allele set adam->htsjdk
- ancestral allele set adam->htsjdk
- no dbsnp membership set adam->htsjdk
- dbsnp membership set adam->htsjdk
- no hapmap2 membership set adam->htsjdk
- hapmap2 membership set adam->htsjdk
- no hapmap3 membership set adam->htsjdk
- hapmap3 membership set adam->htsjdk
- no validated set adam->htsjdk
- validated set adam->htsjdk
- no 1000G membership set adam->htsjdk
- 1000G membership set adam->htsjdk
- no allele count set adam->htsjdk
- allele count set adam->htsjdk
- no allele frequency set adam->htsjdk
- allele frequency set adam->htsjdk
- no cigar set adam->htsjdk
- cigar set adam->htsjdk
- no read depth set adam->htsjdk
- read depth set adam->htsjdk
- read depth without reference read depth
- reference read depth without read depth
- no forward read depth set adam->htsjdk
- forward read depth set adam->htsjdk
- reference forward read depth without forward read depth
- forward read depth without reference forward read depth
- no reverse read depth set adam->htsjdk
- reverse read depth set adam->htsjdk
- reference reverse read depth without reverse read depth
- reverse read depth without reference reverse read depth
- VCF INFO attribute Number=0 Type=Flag adam->htsjdk
- VCF INFO attribute Number=4 Type=Flag adam->htsjdk unsupported, strict !!! IGNORED !!!
- VCF INFO attribute Number=1 Type=Integer adam->htsjdk
- VCF INFO attribute Number=4 Type=Integer adam->htsjdk
- VCF INFO attribute Number=A Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=String adam->htsjdk
- VCF INFO attribute Number=G Type=String adam->htsjdk not supported
- VCF INFO attribute Number=0 Type=Flag htsjdk->adam
- VCF INFO attribute Number=1 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Float htsjdk->adam
- VCF INFO attribute Number=A Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=String htsjdk->adam
- VCF INFO attribute Number=G Type=String htsjdk->adam not supported
- VCF FORMAT attribute Number=0 Type=Flag adam->htsjdk not supported
- VCF FORMAT attribute Number=1 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=4 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=A Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=String adam->htsjdk
- VCF FORMAT attribute Number=0 Type=Flag htsjdk->adam is not supported
- VCF FORMAT attribute Number=1 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Float htsjdk->adam
- VCF FORMAT attribute Number=A Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=String htsjdk->adam
- VCF FORMAT attribute Number=G Type=String htsjdk->adam
- respect end position for symbolic alts
FastqRecordConverterSuite:
- test read name suffix and index of pair must match
- test parseReadInFastq, read suffix removal
- test parseReadInFastq, read metadata removal
- test parseReadInFastq, read quality shorter than read length, padded with B
- test parseReadInFastq, read quality longer than read length 
- test parseReadInFastq, no read quality
- testing FastqRecordConverter.convertPair with valid input
- testing FastqRecordConverter.convertPair with 7-line invalid input
- testing FastqRecordConverter.convertPair with invalid input: first read length and qual don't match
- testing FastqRecordConverter.convertPair with invalid input: second read length and qual don't match
- testing FastqRecordConverter.convertFragment with valid input
- testing FastqRecordConverter.convertFragment with another valid input having /1, /2 suffixes
- testing FastqRecordConverter.convertFragment with invalid input: different read names
- testing FastqRecordConverter.convertRead with valid input
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setSecondOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair and setSecondOfPair both true
- testing FastqRecordConverter.convertRead with valid input, no qual, strict
- testing FastqRecordConverter.convertRead with valid input, no qual, not strict
AttributeSuite:
- test SAMTagAndValue parsing
- Attributes can be correctly re-encoded as text SAM tags
GFF3HeaderWriterSuite:
- write gff3 header pragma
BinQualitiesSuite:
- make a quality score bin
- can't have a quality score bin with negative score
- can't have a quality score bin with high score below low
- can't have a quality score bin with high score above 255
- can't have a quality score bin with score outside
- make a quality score bin from a string
- quality score bin must have exactly 3 elements
- quality score bin must be integers
- must define at least one bin
- build multiple bins
- rewrite quality scores for a read
- rewriting quality scores fails if bins overlap
- rewriting quality scores fails if base is out of bounds
- skip read if qualities are null
- rewrite a read
IndexedFastaFileSuite:
- correctly generates sequence dictionary from .dict file
- correctly gets sequence
- fails when fai index is not provided
2020-10-19 19:09:52 WARN  IndexedFastaFile:190 - Caught exception java.lang.NullPointerException when loading FASTA sequence dictionary. Using empty dictionary instead.
- passes when dict is not provided and ValidationStringency = LENIENT
SAMRecordConverterSuite:
- testing the fields in an Alignment obtained from a mapped samRecord conversion
- testing the fields in an Alignment obtained from an unmapped samRecord conversion
- '*' quality gets nulled out
- don't keep denormalized fields
ADAMContextSuite:
- ctr is accessible
- load from an empty directory
- sc.loadParquet should not fail on unmapped reads
- sc.loadParquet should not load a file without a type specified
- can read a small .SAM file
- can read a small .SAM file with a bad header with lenient validation
- loading a sam file with a bad header and strict stringency should fail
- can read a small .CRAM file
- can read a small .SAM with all attribute tag types
- can filter a .SAM file based on quality
- Can convert to phred
- Can convert from phred
- Can read a .gtf file
- Can read a .bed file
- Can read a BED 12 file
- Can read a .narrowPeak file
- Can read a .interval_list file
2020-10-19 19:09:55 WARN  VariantContextConverter:190 - Saw invalid info field java.lang.IllegalArgumentException: Multivalued flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">. Ignoring...
2020-10-19 19:09:55 WARN  VariantContextConverter:190 - Generating field extractor from header line INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag."> failed: java.lang.IllegalArgumentException: Multivalue flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">
- can read a small .vcf file with a validation issue
- can read a small .vcf file
2020-10-19 19:09:55 WARN  VCFInputFormat:218 - file:/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/2.12.8/test-classes/test.vcf.gz is not splittable, consider using block-compressed gzip (BGZF)
- can read a gzipped .vcf file
- can read a vcf file with an empty alt
- can read a BGZF gzipped .vcf file with .gz file extension
- can read a BGZF gzipped .vcf file with .bgz file extension
- can read a vcf file with a projection
- can read an uncompressed BCFv2.2 file !!! IGNORED !!!
- can read a BGZF compressed BCFv2.2 file !!! IGNORED !!!
- loadIndexedVcf with 1 ReferenceRegion
- loadIndexedVcf with multiple ReferenceRegions
- load block compressed interleaved fastq
- import records from interleaved FASTQ: 1
- import records from interleaved FASTQ: 2
- import records from interleaved FASTQ: 3
- import records from interleaved FASTQ: 4
- import block compressed single fastq
- import records from single ended FASTQ: 1
- import records from single ended FASTQ: 2
- import records from single ended FASTQ: 3
- import records from single ended FASTQ: 4
- filter on load using the filter2 API
- saveAsParquet with file path
- saveAsParquet with file path, block size, page size
- saveAsParquet with save args
- read a HLA fasta from GRCh38
- read a gzipped fasta file
- read a fasta file with comments, gaps, and translation stops
- loadIndexedBam with 1 ReferenceRegion
- loadIndexedBam with multiple ReferenceRegions
- loadIndexedBam with multiple ReferenceRegions and indexed bams
- loadIndexedBam with multiple ReferenceRegions and a directory of indexed bams
- loadIndexedBam should throw exception without an index file
- loadIndexedBam should work with indexed file with index naming format <filename>.bai
- loadIndexedBam glob should throw exception without an index file
- loadBam with a glob
- loadBam with a directory
- load vcf with a glob
- load vcf from a directory
- load gvcf which contains a multi-allelic row from a directory
- load and save gvcf which contains rows without likelihoods
- parse annotations for multi-allelic rows
- load parquet with globs
- bad glob should fail
- empty directory should fail
- can read a SnpEff-annotated .vcf file
- loadAlignments should not fail on single-end and paired-end fastq reads
- load queryname sorted sam as fragments
- load query grouped sam as fragments
- load paired fastq
- load paired fastq without cache
- load paired fastq as fragments
- load paired fastq as fragments without cache
- load HTSJDK sequence dictionary
- load Bedtools .genome file as sequence dictionary
- load Bedtools .genome.txt file as sequence dictionary
- load UCSC Genome Browser chromInfo.txt file as sequence dictionary
- load unrecognized file extension as sequence dictionary fails
- load BED features with Bedtools .genome file as sequence dictionary
- load BED features with Bedtools .genome file as sequence dictionary, no matching features
- convert program record
- load program record from sam file
- load alignments from data frame
- load features from data frame
- load fragments from data frame
- load genotypes from data frame with default header lines
- load genotypes from data frame with empty header lines
- load reads from data frame
- load sequences from data frame
- load slices from data frame
- load variant contexts from data frame with default header lines
- load variant contexts from data frame with empty header lines
- load variants from data frame with default header lines
- load variants from data frame with empty header lines
- load alignments with metadata from data frame
- load features with metadata from data frame
- load fragments with metadata from data frame
- load genotypes with metadata from data frame
- load variant contexts with metadata from data frame
- load variants with metadata from data frame
- read a fasta file with short sequences as sequences
- read a fasta file with long sequences as sequences
- read a fasta file with short sequences as slices
- read a fasta file with long sequences as slices
CycleCovariateSuite:
- compute covariates for an unpaired read on the negative strand
- compute covariates for a first-of-pair read on the negative strand
- compute covariates for a second-of-pair read on the negative strand
- compute covariates for an unpaired read on the positive strand
- compute covariates for a first-of-pair read on the positive strand
- compute covariates for a second-of-pair read on the positive strand
AlignmentConverterSuite:
- testing the fields in a converted ADAM Read
- converting a read with null quality is OK
- convert a read to fastq
- reverse complement reads when converting to fastq
- converting to fastq with unmapped reads where  read reverse complemented flag (Ox10) was NOT set
- converting to fastq with unmapped reads where reverse complemented flag (0x10) was set
- converting a fragment with no alignments should yield unaligned reads
- converting a fragment with alignments should restore the alignments
- read negative strand is propagated even when not mapped
ConsensusGeneratorFromKnownsSuite:
- no consensuses for empty target
- no consensuses for reads that don't overlap a target
- return a consensus for read overlapping a single target
RichCigarSuite:
- moving 2 bp from a deletion to a match operator
- moving 2 bp from a insertion to a match operator
- moving 1 base in a two element cigar
- move to start of read
- process right clipped cigar
- process left clipped cigar
- process cigar clipped on both ends
MDTaggingSuite:
- test adding MDTags over boundary
- test adding MDTags; reads span full contig
- test adding MDTags; reads start inside first fragment
- test adding MDTags; reads end inside last fragment
- test adding MDTags; reads start inside first fragment and end inside last fragment
- test adding MDTags; reads start and end in middle fragements
2020-10-19 19:11:03 WARN  BlockManager:69 - Putting block rdd_5_3 failed due to exception java.lang.Exception: Contig chr2 not found in reference map with keys: chr1.
2020-10-19 19:11:03 WARN  BlockManager:69 - Block rdd_5_3 could not be removed as it was not found on disk or in memory
2020-10-19 19:11:03 ERROR Executor:94 - Exception in task 3.0 in stage 2.0 (TID 11)
java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap.$anonfun$extract$1(ReferenceContigMap.scala:64)
	at scala.collection.immutable.Map$Map1.getOrElse(Map.scala:119)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$3(MDTagging.scala:76)
	at scala.Option$WithFilter.map(Option.scala:163)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$1(MDTagging.scala:71)
	at scala.collection.Iterator$$anon$10.next(Iterator.scala:459)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager.$anonfun$doPutIterator$1(BlockManager.scala:1371)
	at org.apache.spark.storage.BlockManager.org$apache$spark$storage$BlockManager$$doPut(BlockManager.scala:1298)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1362)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:1186)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:360)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:311)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:127)
	at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:446)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:449)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)
2020-10-19 19:11:03 WARN  TaskSetManager:69 - Lost task 3.0 in stage 2.0 (TID 11, 192.168.10.31, executor driver): java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap.$anonfun$extract$1(ReferenceContigMap.scala:64)
	at scala.collection.immutable.Map$Map1.getOrElse(Map.scala:119)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$3(MDTagging.scala:76)
	at scala.Option$WithFilter.map(Option.scala:163)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$1(MDTagging.scala:71)
	at scala.collection.Iterator$$anon$10.next(Iterator.scala:459)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager.$anonfun$doPutIterator$1(BlockManager.scala:1371)
	at org.apache.spark.storage.BlockManager.org$apache$spark$storage$BlockManager$$doPut(BlockManager.scala:1298)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1362)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:1186)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:360)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:311)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:127)
	at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:446)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:449)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)

2020-10-19 19:11:03 ERROR TaskSetManager:73 - Task 3 in stage 2.0 failed 1 times; aborting job
- try realigning a read on a missing contig, stringency == STRICT
2020-10-19 19:11:04 WARN  MDTagging:190 - Caught exception when processing read chr2: java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
- try realigning a read on a missing contig, stringency == LENIENT
FileExtensionsSuite:
- ends in gzip extension
- is a vcf extension
PhredUtilsSuite:
- convert low phred score to log and back
- convert high phred score to log and back
- convert overflowing phred score to log and back and clip
- convert negative zero log probability to phred and clip
- round trip log probabilities
ReadDatasetSuite:
- create a new read genomic dataset
- create a new read genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fastq
- save as single file fastq
- filter read genomic dataset by reference region
- broadcast region join reads and features
- shuffle region join reads and features
- convert reads to alignments
- convert reads to sequences
- convert reads to slices
AlignmentDatasetSuite:
- sorting reads
- unmapped reads go at the end when sorting
- coverage does not fail on unmapped reads
- computes coverage
- computes coverage with multiple samples
- merges adjacent records with equal coverage values
- sorting reads by reference index
- round trip from ADAM to SAM and back to ADAM produces equivalent Read values
- round trip with single CRAM file produces equivalent Read values
- round trip with sharded CRAM file produces equivalent Read values
- SAM conversion sets read mapped flag properly
- load long FASTQ reads
- load FASTQ with no bases
- convert malformed FASTQ (no quality scores) => SAM => well-formed FASTQ => SAM
- round trip from ADAM to FASTQ and back to ADAM produces equivalent Read values
- round trip from ADAM to paired-FASTQ and back to ADAM produces equivalent Read values
- writing a small file with tags should produce the expected result
- writing a small sorted file as SAM should produce the expected result
- writing unordered sam from unordered sam
- writing ordered sam from unordered sam
- write single sam file back
- write single bam file back
- saveAsParquet with save args, sequence dictionary, and read group dictionary
- load parquet to sql, save, re-read from avro
- load from sam, save as partitioned parquet, and re-read from partitioned parquet
- save as SAM format
- save as sorted SAM format
- save as BAM format
- save as sorted BAM format
- save as FASTQ format
- save as ADAM parquet format
- saveAsSam SAM format
- saveAsSam SAM format single file
- saveAsSam sorted SAM format single file
- saveAsSam BAM format
- saveAsSam BAM format single file
- saveAsSam sorted BAM format single file
- saveAsFastq
- saveAsFastq as single file
- saveAsFastq with original base qualities
- saveAsFastq sorted by read name
- saveAsFastq sorted by read name with original base qualities
2020-10-19 19:12:51 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsFastq paired FASTQ
2020-10-19 19:12:53 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq
2020-10-19 19:12:55 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq as single files
- don't lose any reads when piping as SAM
2020-10-19 19:13:10 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
2020-10-19 19:13:10 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
- lose all records when a command times out
- lose no records without a timeout
2020-10-19 19:13:32 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnnKuH0eo/spark-13ae399a-e21d-4b79-811f-d59826804f3f/userFiles-5ececeed-9898-489c-b3c1-f1d134ae6670/timeout.py) timed out after 5 seconds.
2020-10-19 19:13:33 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnnKuH0eo/spark-13ae399a-e21d-4b79-811f-d59826804f3f/userFiles-5ececeed-9898-489c-b3c1-f1d134ae6670/timeout.py) timed out after 5 seconds.
- lose some records when a command times out
- don't lose any reads when piping as SAM using java pipe
- don't lose any reads when piping as BAM
- don't lose any reads when piping fastq to sam
- can properly set environment variables inside of a pipe
- read vcf from alignment pipe !!! IGNORED !!!
- use broadcast join to pull down reads mapped to targets
- use broadcast join against to pull down reads mapped to targets
- use right outer broadcast join to pull down reads mapped to targets
- use right outer broadcast join against to pull down reads mapped to targets
- use shuffle join with feature spanning partitions
- use shuffle join to pull down reads mapped to targets
- use shuffle join with flankSize to pull down reads mapped close to targets
- use right outer shuffle join to pull down reads mapped to targets
- use left outer shuffle join to pull down reads mapped to targets
- use full outer shuffle join to pull down reads mapped to targets
- use shuffle join with group by to pull down reads mapped to targets
- use right outer shuffle join with group by to pull down reads mapped to targets
- cannot provide empty quality score bins
- cannot provide bins with a gap
- cannot provide overlapping bins
- binning quality scores in reads succeeds even if reads have no quality scores
- bin quality scores in reads
- union two read files together
- test k-mer counter
- test dataset based k-mer counter
- transform reads to slice genomic dataset
- transform reads to coverage genomic dataset
- transform reads to feature genomic dataset
- transform reads to fragment genomic dataset
- transform reads to genotype genomic dataset
loading /tmp/adamTestMvnnKuH0eo/TempSuite6706245084358169799.adam as parquet into RDD...
loading /tmp/adamTestMvnnKuH0eo/TempSuite8731085637387038122.adam as parquet into RDD...
- transform reads to variant genomic dataset
- cannot have a null processing step ID
- convert a processing description to htsjdk
- GenomicDataset.sort does not fail on unmapped reads
- GenomicDataset.sortLexicographically does not fail on unmapped reads
- left normalize indels
2020-10-19 19:14:54 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- running base recalibration with downsampling doesn't drop reads
- filter RDD bound alignments by MAPQ
- filter dataset bound alignments by MAPQ
- filter RDD bound unaligned alignments
- filter dataset bound unaligned alignments
- filter RDD bound unpaired alignments
- filter dataset bound unpaired alignments
- filter RDD bound duplicate alignments
- filter dataset bound duplicate alignments
- filter RDD bound alignments to primary alignments
- filter dataset bound alignments to primary alignments
- filter RDD bound alignments to read group
- filter dataset bound alignments to read group
- filter RDD bound alignments to read groups
- filter dataset bound alignments to read groups
- filter RDD bound alignments to sample
- filter dataset bound alignments to sample
- filter RDD bound alignments to samples
- filter dataset bound alignments to samples
- sort by read name
- transform dataset via java API
- convert alignments to reads
SmithWatermanSuite:
- gather max position from simple scoring matrix
- gather max position from irregular scoring matrix
- gather max position from irregular scoring matrix with deletions
- score simple alignment with constant gap
- score irregular scoring matrix
- score irregular scoring matrix with indel
- can unroll cigars correctly
- execute simple trackback
- execute trackback with indel
- run end to end smith waterman for simple reads
- run end to end smith waterman for short sequences with indel
- run end to end smith waterman for longer sequences with snp
- run end to end smith waterman for longer sequences with short indel
- run end to end smith waterman for shorter sequence in longer sequence
- run end to end smith waterman for shorter sequence in longer sequence, with indel
- smithWaterman - simple alignment
MdTagSuite:
- null md tag
- zero length md tag
- md tag with non-digit initial value
- md tag invalid base
- md tag, pure insertion
- md tag, pure insertion, test 2
- md tag pure insertion equality
- md tag equality and hashcode
- valid md tags
- get start of read with no mismatches or deletions
- get start of read with no mismatches, but with a deletion at the start
- get start of read with mismatches at the start
- get end of read with no mismatches or deletions
- check that mdtag and rich record return same end
- get end of read with no mismatches, but a deletion at end
- CIGAR with N operator
- CIGAR with multiple N operators
- CIGAR with P operators
- Get correct matches for mdtag with insertion
- Get correct matches for mdtag with mismatches and insertion
- Get correct matches for mdtag with insertion between mismatches
- Get correct matches for mdtag with intron between mismatches
- Get correct matches for mdtag with intron and deletion between mismatches
- Throw exception when number of deleted bases in mdtag disagrees with CIGAR
- Get correct matches for mdtag with mismatch, insertion and deletion
- Get correct matches for mdtag with mismatches, insertion and deletion
- Get correct matches for MDTag with mismatches and deletions
- Get correct matches base from MDTag and CIGAR with N
- get end of read with mismatches and a deletion at end
- get correct string out of mdtag with no mismatches
- get correct string out of mdtag with mismatches at start
- get correct string out of mdtag with deletion at end
- get correct string out of mdtag with mismatches at end
- get correct string out of complex mdtag
- check complex mdtag
- get gapped reference
- move a cigar alignment by two for a read
- rewrite alignment to all matches
- rewrite alignment to two mismatches followed by all matches
- rewrite alignment to include a deletion but otherwise all matches
- rewrite alignment to include an insertion at the start of the read but otherwise all matches
- create new md tag from read vs. reference, perfect match
- create new md tag from read vs. reference, perfect alignment match, 1 mismatch
- create new md tag from read vs. reference, alignment with deletion
- create new md tag from read vs. reference, alignment with insert
- handle '=' and 'X' operators
- CIGAR/MD tag mismatch should cause errors
GenomicDatasetSuite:
- processing a command that is the spark root directory should return an absolute path
- processing a command that is just a single word should do nothing
- processing a command should handle arguments that include spaces
- processing a command that is a single substitution should succeed
- processing a command that is multiple words should split the string
- process a command that is multiple words with a replacement
- process a command that is multiple words with multiple replacements
ParallelFileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
- get the size of several files
- block size must be positive and non-zero when trying to merge files
- must provide files to merge
- if two files are both below the block size, they should merge into one shard
- merge two files where one is greater than the block size
- merge a sharded sam file
- merge a sharded bam file
- merge a sharded cram file
- can't turn a negative index into a path
- generate a path from an index
IndelTableSuite:
- check for indels in a region with known indels
- check for indels in a contig that doesn't exist
- check for indels in a region without known indels
- build indel table from rdd of variants
SnpTableSuite:
- create an empty snp table
- create a snp table from variants on multiple contigs
- create a snp table from a larger set of variants
- perform lookups on multi-contig snp table
- perform lookups on larger snp table
RealignIndelsSuite:
- map reads to targets
- checking mapping to targets for artificial reads
- checking alternative consensus for artificial reads
- checking extraction of reference from reads
- checking realigned reads for artificial input
- checking realigned reads for artificial input with reference file
- checking realigned reads for artificial input using knowns
- checking realigned reads for artificial input using knowns and reads
- skip realigning reads if target is highly covered
- skip realignment if target is an insufficient LOD improvement
- realign reads to an insertion
- test mismatch quality scoring
- test mismatch quality scoring for no mismatches
- test mismatch quality scoring for offset
- test mismatch quality scoring with early exit
- test mismatch quality scoring after unpacking read
- we shouldn't try to realign a region with no target
- we shouldn't try to realign reads with no indel evidence
- test OP and OC tags
- realign a read with an insertion that goes off the end of the read
- if realigning a target doesn't improve the LOD, don't drop reads
- extract seq/qual from a read with no clipped bases
- extract seq/qual from a read with clipped bases at start
- extract seq/qual from a read with clipped bases at end
- if unclip is selected, don't drop base when extracting from a read with clipped bases
- get cigar and coordinates for read that spans indel, no clipped bases
- get cigar and coordinates for read that spans deletion, clipped bases at start
- get cigar and coordinates for read that falls wholly before insertion
- get cigar and coordinates for read that falls wholly after insertion
- get cigar and coordinates for read that falls wholly after deletion
- get cigar and coordinates for read that partially spans insertion, no clipped bases
- get cigar and coordinates for read that partially spans insertion, clipped bases at end
- get cigar and coordinates for read that partially spans insertion, clipped bases both ends
BaseQualityRecalibrationSuite:
2020-10-19 19:15:49 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- BQSR Test Input #1 w/ VCF Sites without caching
2020-10-19 19:16:00 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- BQSR Test Input #1 w/ VCF Sites with caching
2020-10-19 19:16:10 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- BQSR Test Input #1 w/ VCF Sites with serialized caching
DinucCovariateSuite:
- computing dinucleotide pairs for a single base sequence should return (N,N)
- compute dinucleotide pairs for a string of all valid bases
- compute dinucleotide pairs for a string with an N
- compute covariates for a read on the negative strand
- compute covariates for a read on the positive strand
SequenceDictionarySuite:
- Convert from sam sequence record and back
- Convert from SAM sequence dictionary file (with extra fields)
- merge into existing dictionary
- Convert from SAM sequence dictionary and back
- Can retrieve sequence by name
- SequenceDictionary's with same single element are equal
- SequenceDictionary's with same two elements are equals
- SequenceDictionary's with different elements are unequal
- SequenceDictionaries with same elements in different order are compatible
- isCompatible tests equality on overlap
- The addition + works correctly
- The append operation ++ works correctly
- ContainsRefName works correctly for different string types
- Apply on name works correctly for different String types
- convert from sam sequence record and back
- convert from sam sequence dictionary and back
- conversion to sam sequence dictionary has correct sort order
- load sequence dictionary from VCF file
- empty sequence dictionary must be empty
- test filter to reference name
- test filter to reference names
- test filter to reference name by function
GenomicPositionPartitionerSuite:
- partitions the UNMAPPED ReferencePosition into the top partition
- if we do not have a contig for a record, we throw an IAE
- partitioning into N pieces on M total sequence length, where N > M, results in M partitions
- correctly partitions a single dummy sequence into two pieces
- correctly counts cumulative lengths
- correctly partitions positions across two dummy sequences
- test that we can range partition ADAMRecords
- test that we can range partition ADAMRecords indexed by sample
- test that simple partitioning works okay on a reasonable set of ADAMRecords
- test indexed ReferencePosition partitioning works on a set of indexed ADAMRecords
CoverageSuite:
- Convert to coverage from valid Feature
- Convert to coverage from valid Feature with sampleId
- Convert to coverage from Feature with null/empty contigName fails with correct error
- Convert to coverage from Feature with no start/end position fails with correct error
- Convert to coverage from Feature with no score fails with correct error
InnerTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
- Multiple reference regions do not throw exception
VariantDatasetSuite:
- union two variant genomic datasets together
- round trip to parquet
- save and reload from partitioned parquet
- use broadcast join to pull down variants mapped to targets
- use right outer broadcast join to pull down variants mapped to targets
- use shuffle join to pull down variants mapped to targets
- use right outer shuffle join to pull down variants mapped to targets
- use left outer shuffle join to pull down variants mapped to targets
- use full outer shuffle join to pull down variants mapped to targets
- use shuffle join with group by to pull down variants mapped to targets
- use right outer shuffle join with group by to pull down variants mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2020-10-19 19:16:38 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform variants to slice genomic dataset
- transform variants to coverage genomic dataset
- transform variants to feature genomic dataset
- transform variants to fragment genomic dataset
- transform variants to read genomic dataset
- transform variants to genotype genomic dataset
- transform variants to variant context genomic dataset
- filter RDD bound variants to filters passed
- filter dataset bound variants to filters passed
- filter RDD bound variants by quality
- filter dataset bound variants by quality
- filter RDD bound variants by read depth
- filter dataset bound variants by read depth
- filter RDD bound variants by reference read depth
- filter dataset bound variants by reference read depth
- filter RDD bound single nucleotide variants
- filter dataset bound single nucleotide variants
- filter RDD bound multiple nucleotide variants
- filter dataset bound multiple nucleotide variants
- filter RDD bound indel variants
- filter dataset bound indel variants
- filter RDD bound variants to single nucleotide variants
- filter dataset bound variants to single nucleotide variants
- filter RDD bound variants to multiple nucleotide variants
- filter dataset bound variants to multiple nucleotide variants
- filter RDD bound variants to indel variants
- filter dataset bound variants to indel variants
- transform dataset via java API
Run completed in 9 minutes, 26 seconds.
Total number of tests run: 1175
Suites: completed 68, aborted 0
Tests: succeeded 1175, failed 0, canceled 0, ignored 5, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-core-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-core-spark3_2.12 ---
[INFO] Skipping SCoverage report generation
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-apis-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: APIs for Java, Python 0.33.0-SNAPSHOT          [5/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark3_2.12 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/target/2.12.8/classes at 1603160232974
[WARNING] warning: there was one deprecation warning (since 2.12.0); re-run with -deprecation for details
[WARNING] warning: there were two feature warnings; re-run with -feature for details
[WARNING] two warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 7 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/src/test/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/src/test/scala:-1: info: compiling
[INFO] Compiling 9 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/target/2.12.8/test-classes at 1603160240964
[INFO] prepare-compile in 0 s
[INFO] compile in 5 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark3_2.12 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 8 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/target/2.12.8/test-classes
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark3_2.12 ---
Discovery starting.
Discovery completed in 204 milliseconds.
Run starting. Expected test count is: 10
JavaADAMContextSuite:
2020-10-19 19:17:27 WARN  Utils:69 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0)
2020-10-19 19:17:27 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-10-19 19:17:28 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can read and write a small .SAM file
- loadIndexedBam with multiple ReferenceRegions
- can read and write a small .SAM file as fragments
- can read and write a small .bed file as features
- can read and write a small .bed file as coverage
- can read and write a small .vcf as genotypes
- can read and write a small .vcf as variants
- can read a two bit file
2020-10-19 19:17:38 WARN  RDDBoundSequenceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as sequences
2020-10-19 19:17:39 WARN  RDDBoundSliceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as slices
Run completed in 11 seconds, 855 milliseconds.
Total number of tests run: 10
Suites: completed 2, aborted 0
Tests: succeeded 10, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-apis-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark3_2.12 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-apis-spark3_2.12 ---
[WARNING] Skipping SCoverage execution - unsupported Scala version "2.12.8"
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/src/test/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/src/test/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/target/generated-test-sources/test-annotations:-1: info: compiling
[INFO] Compiling 9 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/target/2.12.8/test-classes at 1603160260810
[INFO] prepare-compile in 0 s
[INFO] compile in 4 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark3_2.12 ---
Discovery starting.
Discovery completed in 265 milliseconds.
Run starting. Expected test count is: 10
JavaADAMContextSuite:
2020-10-19 19:17:46 WARN  Utils:69 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0)
2020-10-19 19:17:46 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-10-19 19:17:47 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can read and write a small .SAM file
- loadIndexedBam with multiple ReferenceRegions
- can read and write a small .SAM file as fragments
- can read and write a small .bed file as features
- can read and write a small .bed file as coverage
- can read and write a small .vcf as genotypes
- can read and write a small .vcf as variants
- can read a two bit file
2020-10-19 19:17:58 WARN  RDDBoundSequenceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as sequences
2020-10-19 19:17:59 WARN  RDDBoundSliceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as slices
Run completed in 13 seconds, 98 milliseconds.
Total number of tests run: 10
Suites: completed 2, aborted 0
Tests: succeeded 10, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-apis-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-apis-spark3_2.12 ---
[INFO] Skipping SCoverage report generation
[INFO] 
[INFO] --------------< org.bdgenomics.adam:adam-cli-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: CLI 0.33.0-SNAPSHOT                            [6/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark3_2.12 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] Copied 1 files to output directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark3_2.12 ---
[INFO] Modified 0 of 29 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling
[INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/2.12.8/classes at 1603160281212
[WARNING] warning: there was one deprecation warning
[WARNING] warning: there was one deprecation warning (since 2.12.0)
[WARNING] warning: there were two deprecation warnings in total; re-run with -deprecation for details
[WARNING] three warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 8 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark3_2.12 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/2.12.8/classes
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/src/test/scala:-1: info: compiling
[INFO] Compiling 12 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/2.12.8/test-classes at 1603160290159
[INFO] prepare-compile in 0 s
[INFO] compile in 7 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark3_2.12 ---
Discovery starting.
Discovery completed in 299 milliseconds.
Run starting. Expected test count is: 44
TransformFeaturesSuite:
2020-10-19 19:18:19 WARN  Utils:69 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0)
2020-10-19 19:18:19 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-10-19 19:18:19 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can convert a simple BED file
TransformVariantsSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
ViewSuite:
- -f 0 -F 0 is a no-op
- no -f or -F args is a no-op
- -f 4: only unmapped reads
- -F 4: only mapped reads
- -f 4 -F 8: unmapped reads with mapped mates
- -f 12: unmapped reads with unmapped mates
- -g 12: reads that are unmapped or whose mate is unmapped
- -F 12: mapped reads with mapped mates
- -g 36: unmapped reads or reads with mate on negative strand
- -F 36: unmapped reads or reads with mate on negative strand
TransformFragmentsSuite:
- load queryname sorted sam and save as parquet
- cannot sort if not saving as sam
2020-10-19 19:18:34 WARN  TransformFragments:190 - If loading and saving as alignments, consider using TransformAlignments instead
- load reads as sam and save them sorted
- bin quality scores on reads
TransformGenotypesSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
- transform VCF without nested annotations
- transform VCF with nested annotations
AboutSuite:
- template variables have been replaced
- templated values are not empty
CoverageSuite:
- correctly calculates coverage from small sam file
MergeShardsSuite:
- merge shards from unordered sam to unordered sam
- unordered sam to ordered sam
- merge sharded bam
- merge sharded cram
TransformAlignmentsSuite:
- unordered sam to unordered sam
- unordered sam to ordered sam
- unordered sam, to adam, to sam
- unordered sam, to adam, to ordered sam
- put quality scores into bins
- run region predicate
ADAMMainSuite:
- default command groups is non empty
- module provides default command groups
- inject default command groups when called via main
- command groups is empty when called via apply
- single command group
- add new command group to default command groups
- module restores default command groups when called via apply
- custom module with single command group
- custom module with new command group added to default command groups
Adam2FastqSuite:
2020-10-19 19:18:45 WARN  RDDBoundAlignmentDataset:190 - Found 16 read names that don't occur exactly twice:
	1x:	16

Samples:
	SRR062634.16445865
	SRR062634.9119161
	SRR062634.17190076
	SRR062634.17969132
	SRR062634.7301099
	SRR062634.2087100
	SRR062634.20911784
	SRR062634.16769670
	SRR062634.18958430
	SRR062634.12099057
	SRR062634.12606172
	SRR062634.14985224
	SRR062634.10448889
	SRR062634.4789722
	SRR062634.3203184
	SRR062634.17698657
- convert SAM to paired FASTQ
Run completed in 27 seconds, 919 milliseconds.
Total number of tests run: 44
Suites: completed 12, aborted 0
Tests: succeeded 44, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-cli-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark3_2.12 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark3_2.12 ---
[INFO] Modified 0 of 29 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-cli-spark3_2.12 ---
[WARNING] Skipping SCoverage execution - unsupported Scala version "2.12.8"
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/2.12.8/classes at 1603160328002
[WARNING] warning: there was one deprecation warning
[WARNING] warning: there was one deprecation warning (since 2.12.0)
[WARNING] warning: there were two deprecation warnings in total; re-run with -deprecation for details
[WARNING] three warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 8 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark3_2.12 ---
Discovery starting.
Discovery completed in 299 milliseconds.
Run starting. Expected test count is: 44
TransformFeaturesSuite:
2020-10-19 19:18:59 WARN  Utils:69 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0)
2020-10-19 19:18:59 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-10-19 19:18:59 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can convert a simple BED file
TransformVariantsSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
ViewSuite:
- -f 0 -F 0 is a no-op
- no -f or -F args is a no-op
- -f 4: only unmapped reads
- -F 4: only mapped reads
- -f 4 -F 8: unmapped reads with mapped mates
- -f 12: unmapped reads with unmapped mates
- -g 12: reads that are unmapped or whose mate is unmapped
- -F 12: mapped reads with mapped mates
- -g 36: unmapped reads or reads with mate on negative strand
- -F 36: unmapped reads or reads with mate on negative strand
TransformFragmentsSuite:
- load queryname sorted sam and save as parquet
- cannot sort if not saving as sam
2020-10-19 19:19:13 WARN  TransformFragments:190 - If loading and saving as alignments, consider using TransformAlignments instead
- load reads as sam and save them sorted
- bin quality scores on reads
TransformGenotypesSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
- transform VCF without nested annotations
- transform VCF with nested annotations
AboutSuite:
- template variables have been replaced
- templated values are not empty
CoverageSuite:
- correctly calculates coverage from small sam file
MergeShardsSuite:
- merge shards from unordered sam to unordered sam
- unordered sam to ordered sam
- merge sharded bam
- merge sharded cram
TransformAlignmentsSuite:
- unordered sam to unordered sam
- unordered sam to ordered sam
- unordered sam, to adam, to sam
- unordered sam, to adam, to ordered sam
- put quality scores into bins
- run region predicate
ADAMMainSuite:
- default command groups is non empty
- module provides default command groups
- inject default command groups when called via main
- command groups is empty when called via apply
- single command group
- add new command group to default command groups
- module restores default command groups when called via apply
- custom module with single command group
- custom module with new command group added to default command groups
Adam2FastqSuite:
2020-10-19 19:19:23 WARN  RDDBoundAlignmentDataset:190 - Found 16 read names that don't occur exactly twice:
	1x:	16

Samples:
	SRR062634.16445865
	SRR062634.9119161
	SRR062634.17190076
	SRR062634.17969132
	SRR062634.7301099
	SRR062634.2087100
	SRR062634.20911784
	SRR062634.16769670
	SRR062634.18958430
	SRR062634.12099057
	SRR062634.12606172
	SRR062634.14985224
	SRR062634.10448889
	SRR062634.4789722
	SRR062634.3203184
	SRR062634.17698657
- convert SAM to paired FASTQ
Run completed in 26 seconds, 14 milliseconds.
Total number of tests run: 44
Suites: completed 12, aborted 0
Tests: succeeded 44, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-cli-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-cli-spark3_2.12 ---
[INFO] Skipping SCoverage report generation
[INFO] 
[INFO] -----------< org.bdgenomics.adam:adam-assembly-spark3_2.12 >------------
[INFO] Building ADAM_2.12: Assembly 0.33.0-SNAPSHOT                       [7/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark3_2.12 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark3_2.12 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/src/main/scala:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/target/2.12.8/classes at 1603160365236
[INFO] prepare-compile in 0 s
[INFO] compile in 2 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-assembly-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark3_2.12 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark3_2.12 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-assembly-spark3_2.12 ---
[WARNING] Skipping SCoverage execution - unsupported Scala version "2.12.8"
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-assembly-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-assembly-spark3_2.12 ---
[INFO] [scoverage] Generating aggregated cobertura XML report...
[INFO] [scoverage] Generating aggregated scoverage XML report...
[INFO] [scoverage] Generating aggregated scoverage HTML report...
[INFO] Skipping SCoverage report generation
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for ADAM_2.12 0.33.0-SNAPSHOT:
[INFO] 
[INFO] ADAM_2.12 .......................................... SUCCESS [  8.695 s]
[INFO] ADAM_2.12: Shader workaround ....................... SUCCESS [  5.544 s]
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils ........... SUCCESS [  6.363 s]
[INFO] ADAM_2.12: Core .................................... SUCCESS [20:06 min]
[INFO] ADAM_2.12: APIs for Java, Python ................... SUCCESS [ 47.460 s]
[INFO] ADAM_2.12: CLI ..................................... SUCCESS [01:25 min]
[INFO] ADAM_2.12: Assembly ................................ SUCCESS [  4.028 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  22:43 min
[INFO] Finished at: 2020-10-19T19:19:28-07:00
[INFO] ------------------------------------------------------------------------

# if those pass, build the distribution package
mvn -U \
    -P distribution \
    package \
    -DskipTests \
    -Dhadoop.version=${HADOOP_VERSION} \
    -DargLine=${ADAM_MVN_TMP_DIR}
+ mvn -U -P distribution package -DskipTests -Dhadoop.version=2.7.5 -DargLine=/tmp/adamTestMvnnKuH0eo
OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.12                                                          [pom]
[INFO] ADAM_2.12: Shader workaround                                       [jar]
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils                           [jar]
[INFO] ADAM_2.12: Core                                                    [jar]
[INFO] ADAM_2.12: APIs for Java, Python                                   [jar]
[INFO] ADAM_2.12: CLI                                                     [jar]
[INFO] ADAM_2.12: Assembly                                                [jar]
[INFO] ADAM_2.12: Distribution                                            [pom]
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-parent-spark3_2.12 >-------------
[INFO] Building ADAM_2.12 0.33.0-SNAPSHOT                                 [1/8]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark3_2.12 ---
[INFO] Modified 0 of 244 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-parent-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-parent-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-parent-spark3_2.12 ---
[INFO] No source files found
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-shade-spark3_2.12 >-------------
[INFO] Building ADAM_2.12: Shader workaround 0.33.0-SNAPSHOT              [2/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark3_2.12 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark3_2.12 ---
[INFO] Discovered 1 component descriptors(s)
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-shade-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/adam-shade-spark3_2.12-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-shade-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/adam-shade-spark3_2.12-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-shade-spark3_2.12 ---
[INFO] 
Loading source files for package org.bdgenomics.adam.shade...
Constructing Javadoc information...
Standard Doclet version 1.8.0_222
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/ParquetAvroWorkaroundShader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/class-use/ParquetAvroWorkaroundShader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/apidocs/index.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/apidocs/help-doc.html...
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/adam-shade-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-shade-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-shade-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-shade-spark3_2.12 ---
model contains 6 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-shade/target/adam-shade-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-codegen-spark3_2.12 >------------
[INFO] Building ADAM_2.12: Avro-to-Dataset codegen utils 0.33.0-SNAPSHOT  [3/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark3_2.12 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-codegen-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-codegen/target/adam-codegen-spark3_2.12-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-codegen-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-codegen/target/adam-codegen-spark3_2.12-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-codegen-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-codegen-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-codegen-spark3_2.12 ---
model contains 11 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-codegen/target/adam-codegen-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-core-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: Core 0.33.0-SNAPSHOT                           [4/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark3_2.12 ---
[INFO] Modified 2 of 204 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] Compiling 140 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/2.12.8/classes at 1603160398354
[WARNING] warning: there were 21 deprecation warnings
[WARNING] warning: there were 31 deprecation warnings (since 0.21.0)
[WARNING] warning: there was one deprecation warning (since 1.0.6)
[WARNING] warning: there was one deprecation warning (since 2.11.0)
[WARNING] warning: there were 175 deprecation warnings (since 2.12.0)
[WARNING] warning: there was one deprecation warning (since 2.12.7)
[WARNING] warning: there were 230 deprecation warnings in total; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] 8 warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 32 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 152 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-core-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/adam-core-spark3_2.12-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-core-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/adam-core-spark3_2.12-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-core-spark3_2.12 ---
[INFO] The goal 'org.apache.maven.plugins:maven-javadoc-plugin:3.1.0:javadoc' has not been previously called for the module: 'org.bdgenomics.adam:adam-codegen-spark3_2.12:jar:0.33.0-SNAPSHOT'. Trying to invoke it...
OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[WARNING] Creating fake javadoc directory to prevent repeated invocations: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-codegen/target/apidocs
[ERROR] Error fetching link: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-codegen/target/apidocs. Ignored it.
[INFO] 
Loading source files for package org.apache.parquet.avro...
Loading source files for package org.bdgenomics.adam.io...
Constructing Javadoc information...
Standard Doclet version 1.8.0_222
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/AvroSchemaConverter.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/FastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/FastqRecordReader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/overview-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-use.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/index.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/overview-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/apidocs/help-doc.html...
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/adam-core-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-core-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-core-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-core-spark3_2.12 ---
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverters.scala:274: warning: discarding unmoored doc comment
    /**
    ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentDataset.scala:840: warning: Octal escape literals are deprecated, use \u0001 instead.
      binaryCodec.writeBytes("BAM\001".getBytes())
                                 ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rich/RichCigar.scala:43: warning: discarding unmoored doc comment
    /**
    ^
warning: there were 5 feature warnings; re-run with -feature for details
model contains 283 documentable templates
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReadGroupDictionary.scala:47: warning: Could not find any member to link for "IllegalArgumentException".
/**
^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/AttributeUtils.scala:70: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:747: warning: Variable x undefined in comment for method pipe in trait GenomicDataset
   * Files are substituted in to the command with a $x syntax. E.g., to invoke
                                                     ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:748: warning: Variable 0 undefined in comment for method pipe in trait GenomicDataset
   * a command that uses the first file from the files Seq, use $0. To access
                                                                 ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:749: warning: Variable root undefined in comment for method pipe in trait GenomicDataset
   * the path to the directory where the files are copied, use $root.
                                                                ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala:178: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala:75: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:3464: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1859: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1839: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1810: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala:45: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:474: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:444: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:429: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:354: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:258: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:242: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/Alphabet.scala:44: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:377: warning: Could not find any member to link for "RuntimeException".
    /**
    ^
24 warnings found
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/adam-core-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:test-jar (default) @ adam-core-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-core/target/adam-core-spark3_2.12-0.33.0-SNAPSHOT-tests.jar
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-apis-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: APIs for Java, Python 0.33.0-SNAPSHOT          [5/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark3_2.12 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-apis-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/target/adam-apis-spark3_2.12-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-apis-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/target/adam-apis-spark3_2.12-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-apis-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-apis-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-apis-spark3_2.12 ---
warning: there were two feature warnings; re-run with -feature for details
model contains 192 documentable templates
one warning found
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/target/adam-apis-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:test-jar (default) @ adam-apis-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/target/adam-apis-spark3_2.12-0.33.0-SNAPSHOT-tests.jar
[INFO] 
[INFO] --------------< org.bdgenomics.adam:adam-cli-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: CLI 0.33.0-SNAPSHOT                            [6/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark3_2.12 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark3_2.12 ---
[INFO] Modified 0 of 29 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-cli-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/adam-cli-spark3_2.12-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-cli-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/adam-cli-spark3_2.12-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-cli-spark3_2.12 ---
[INFO] The goal 'org.apache.maven.plugins:maven-javadoc-plugin:3.1.0:javadoc' has not been previously called for the module: 'org.bdgenomics.adam:adam-apis-spark3_2.12:jar:0.33.0-SNAPSHOT'. Trying to invoke it...
OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[WARNING] Creating fake javadoc directory to prevent repeated invocations: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/target/apidocs
[ERROR] Error fetching link: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-apis/target/apidocs. Ignored it.
[INFO] 
Loading source files for package org.bdgenomics.adam.cli...
Constructing Javadoc information...
Standard Doclet version 1.8.0_222
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/About.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/class-use/About.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/apidocs/index.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/apidocs/help-doc.html...
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/adam-cli-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-cli-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark3_2.12 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-cli-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-cli-spark3_2.12 ---
model contains 55 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-cli/target/adam-cli-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] -----------< org.bdgenomics.adam:adam-assembly-spark3_2.12 >------------
[INFO] Building ADAM_2.12: Assembly 0.33.0-SNAPSHOT                       [7/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark3_2.12 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark3_2.12 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-assembly-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/target/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-assembly-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/target/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-assembly-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark3_2.12 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-assembly-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-assembly-spark3_2.12 ---
model contains 6 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/target/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-shade-plugin:3.2.0:shade (default) @ adam-assembly-spark3_2.12 ---
[INFO] Including org.bdgenomics.adam:adam-cli-spark3_2.12:jar:0.33.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-misc-spark3_2.12:jar:0.3.0 in the shaded jar.
[INFO] Including org.scala-lang:scala-library:jar:2.12.8 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-io-spark3_2.12:jar:0.3.0 in the shaded jar.
[INFO] Including org.apache.httpcomponents:httpclient:jar:4.5.7 in the shaded jar.
[INFO] Including org.apache.httpcomponents:httpcore:jar:4.4.11 in the shaded jar.
[INFO] Including commons-logging:commons-logging:jar:1.2 in the shaded jar.
[INFO] Including commons-codec:commons-codec:jar:1.11 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-cli-spark3_2.12:jar:0.3.0 in the shaded jar.
[INFO] Including org.clapper:grizzled-slf4j_2.12:jar:1.3.4 in the shaded jar.
[INFO] Including org.slf4j:slf4j-api:jar:1.7.30 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-avro:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-column:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-common:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-encoding:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-hadoop:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-jackson:jar:1.10.1 in the shaded jar.
[INFO] Including commons-pool:commons-pool:jar:1.6 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-format:jar:2.4.0 in the shaded jar.
[INFO] Including org.bdgenomics.bdg-formats:bdg-formats:jar:0.15.0 in the shaded jar.
[INFO] Including org.apache.avro:avro:jar:1.8.2 in the shaded jar.
[INFO] Including org.codehaus.jackson:jackson-core-asl:jar:1.9.13 in the shaded jar.
[INFO] Including org.codehaus.jackson:jackson-mapper-asl:jar:1.9.13 in the shaded jar.
[INFO] Including com.thoughtworks.paranamer:paranamer:jar:2.8 in the shaded jar.
[INFO] Including org.xerial.snappy:snappy-java:jar:1.1.1.3 in the shaded jar.
[INFO] Including org.apache.commons:commons-compress:jar:1.8.1 in the shaded jar.
[INFO] Including org.tukaani:xz:jar:1.5 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-core-spark3_2.12:jar:0.33.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-intervalrdd-spark3_2.12:jar:0.3.0 in the shaded jar.
[INFO] Including com.esotericsoftware.kryo:kryo:jar:2.24.0 in the shaded jar.
[INFO] Including com.esotericsoftware.minlog:minlog:jar:1.2 in the shaded jar.
[INFO] Including org.objenesis:objenesis:jar:2.1 in the shaded jar.
[INFO] Including commons-io:commons-io:jar:2.6 in the shaded jar.
[INFO] Including it.unimi.dsi:fastutil:jar:6.6.5 in the shaded jar.
[INFO] Including org.seqdoop:hadoop-bam:jar:7.9.2 in the shaded jar.
[INFO] Including com.github.jsr203hadoop:jsr203hadoop:jar:1.0.3 in the shaded jar.
[INFO] Including com.github.samtools:htsjdk:jar:2.19.0 in the shaded jar.
[INFO] Including org.apache.commons:commons-jexl:jar:2.1.1 in the shaded jar.
[INFO] Including gov.nih.nlm.ncbi:ngs-java:jar:2.9.0 in the shaded jar.
[INFO] Including com.google.guava:guava:jar:27.0-jre in the shaded jar.
[INFO] Including com.google.guava:failureaccess:jar:1.0 in the shaded jar.
[INFO] Including com.google.guava:listenablefuture:jar:9999.0-empty-to-avoid-conflict-with-guava in the shaded jar.
[INFO] Including org.checkerframework:checker-qual:jar:2.5.2 in the shaded jar.
[INFO] Including com.google.errorprone:error_prone_annotations:jar:2.2.0 in the shaded jar.
[INFO] Including com.google.j2objc:j2objc-annotations:jar:1.1 in the shaded jar.
[INFO] Including org.codehaus.mojo:animal-sniffer-annotations:jar:1.17 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-codegen-spark3_2.12:jar:0.33.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-apis-spark3_2.12:jar:0.33.0-SNAPSHOT in the shaded jar.
[INFO] Including args4j:args4j:jar:2.33 in the shaded jar.
[INFO] Including net.codingwell:scala-guice_2.12:jar:4.2.1 in the shaded jar.
[INFO] Including com.google.inject:guice:jar:4.2.0 in the shaded jar.
[INFO] Including javax.inject:javax.inject:jar:1 in the shaded jar.
[INFO] Including aopalliance:aopalliance:jar:1.0 in the shaded jar.
[INFO] Including org.scala-lang:scala-reflect:jar:2.12.6 in the shaded jar.
[INFO] Including com.google.code.findbugs:jsr305:jar:1.3.9 in the shaded jar.
[WARNING] WORKAROUND:  refusing to add class org/apache/parquet/avro/AvroSchemaConverter$2.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar
[WARNING] WORKAROUND:  refusing to add class org/apache/parquet/avro/AvroSchemaConverter.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar
[WARNING] WORKAROUND:  refusing to add class org/apache/parquet/avro/AvroSchemaConverter$1.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar
[WARNING] guava-27.0-jre.jar, failureaccess-1.0.jar define 2 overlapping classes: 
[WARNING]   - com.google.common.util.concurrent.internal.InternalFutureFailureAccess
[WARNING]   - com.google.common.util.concurrent.internal.InternalFutures
[WARNING] maven-shade-plugin has detected that some class files are
[WARNING] present in two or more JARs. When this happens, only one
[WARNING] single version of the class is copied to the uber jar.
[WARNING] Usually this is not harmful and you can skip these warnings,
[WARNING] otherwise try to manually exclude artifacts based on
[WARNING] mvn dependency:tree -Ddetail=true and the above output.
[WARNING] See http://maven.apache.org/plugins/maven-shade-plugin/
[INFO] Replacing original artifact with shaded artifact.
[INFO] Replacing /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/target/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT.jar with /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-assembly/target/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-shaded.jar
[INFO] 
[INFO] ---------< org.bdgenomics.adam:adam-distribution-spark3_2.12 >----------
[INFO] Building ADAM_2.12: Distribution 0.33.0-SNAPSHOT                   [8/8]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-distribution-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-distribution-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-distribution-spark3_2.12 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-distribution-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-distribution-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-distribution-spark3_2.12 ---
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-distribution-spark3_2.12 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-distribution-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-distribution-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-distribution-spark3_2.12 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-distribution-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-distribution-spark3_2.12 ---
[INFO] No source files found
[INFO] 
[INFO] --- maven-assembly-plugin:3.2.0:single (default) @ adam-distribution-spark3_2.12 ---
[INFO] Reading assembly descriptor: src/main/assembly/assembly.xml
[INFO] Building tar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-distribution/target/adam-distribution-spark3_2.12-0.33.0-SNAPSHOT-bin.tar.gz
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/ longer than 100 characters.
[WARNING] Resulting tar file can only be processed successfully by GNU compatible tar commands
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/index.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWatermanConstantGapScoring.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/index.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/ProcessingStep$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/AvroSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/InputStreamWithDecoder.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/index.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/WritableSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Filter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/OntologyTermField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SampleField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantCallingAnnotationsField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadGroupField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SliceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FragmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/TranscriptEffectField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldValue.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReferenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FeatureField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantAnnotationField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/AlignmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/GenotypeField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Projection$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration$SchemaVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SequenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/DbxrefField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignment$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/VictimlessSortedIntervalPartitionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetWithLineage.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/FullOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleAvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3OutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/ParquetUnboundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/RDDBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/DatasetBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ADAMSaveAnyArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ADAMVCFOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/SortedIntervalPartitionJoinWithVictims.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicBroadcast.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/IncorrectMDTagException.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReferencePositionPairSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SingleReadBucketSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RDDBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ReferencePartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroReadGroupGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetFileTraversable.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/AttributeUtils$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/FileExtensions$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetLogger$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMapSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/GenomeFileReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/SequenceDictionaryReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/IndexedFastaFile.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TextRddWriter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TwoBitFileSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/AlignmentConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/DefaultHeaderLines$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/PositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/TagType$$TypeVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalRegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/RegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalPositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePositionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContextSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/python/DataFrameConversionWrapper.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSequenceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToCoverageDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFeatureDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFragmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToGenotypeDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToAlignmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFeatureConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantContextDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSliceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToReadDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlicesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/MergeShardsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariantsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequencesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeaturesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/repo/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-sources.jar longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/repo/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar longer than 100 characters.
[INFO] Building tar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-distribution/target/adam-distribution-spark3_2.12-0.33.0-SNAPSHOT-bin.tar.bz2
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/ longer than 100 characters.
[WARNING] Resulting tar file can only be processed successfully by GNU compatible tar commands
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/index.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWatermanConstantGapScoring.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/index.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/ProcessingStep$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/AvroSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/InputStreamWithDecoder.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/index.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/WritableSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Filter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/OntologyTermField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SampleField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantCallingAnnotationsField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadGroupField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SliceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FragmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/TranscriptEffectField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldValue.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReferenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FeatureField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantAnnotationField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/AlignmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/GenotypeField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Projection$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration$SchemaVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SequenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/DbxrefField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignment$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/VictimlessSortedIntervalPartitionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetWithLineage.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/FullOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleAvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3OutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/ParquetUnboundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/RDDBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/DatasetBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ADAMSaveAnyArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ADAMVCFOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/SortedIntervalPartitionJoinWithVictims.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicBroadcast.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/IncorrectMDTagException.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReferencePositionPairSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SingleReadBucketSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RDDBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ReferencePartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroReadGroupGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetFileTraversable.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/AttributeUtils$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/FileExtensions$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetLogger$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMapSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/GenomeFileReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/SequenceDictionaryReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/IndexedFastaFile.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TextRddWriter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TwoBitFileSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/AlignmentConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/DefaultHeaderLines$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/PositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/TagType$$TypeVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalRegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/RegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalPositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePositionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContextSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/python/DataFrameConversionWrapper.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSequenceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToCoverageDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFeatureDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFragmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToGenotypeDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToAlignmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFeatureConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantContextDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSliceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToReadDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlicesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/MergeShardsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariantsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequencesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeaturesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/repo/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-sources.jar longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/repo/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar longer than 100 characters.
[INFO] Building zip: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/adam-distribution/target/adam-distribution-spark3_2.12-0.33.0-SNAPSHOT-bin.zip
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for ADAM_2.12 0.33.0-SNAPSHOT:
[INFO] 
[INFO] ADAM_2.12 .......................................... SUCCESS [  8.620 s]
[INFO] ADAM_2.12: Shader workaround ....................... SUCCESS [  6.312 s]
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils ........... SUCCESS [  5.266 s]
[INFO] ADAM_2.12: Core .................................... SUCCESS [01:21 min]
[INFO] ADAM_2.12: APIs for Java, Python ................... SUCCESS [ 12.632 s]
[INFO] ADAM_2.12: CLI ..................................... SUCCESS [ 20.966 s]
[INFO] ADAM_2.12: Assembly ................................ SUCCESS [ 15.721 s]
[INFO] ADAM_2.12: Distribution ............................ SUCCESS [ 36.696 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  03:07 min
[INFO] Finished at: 2020-10-19T19:22:37-07:00
[INFO] ------------------------------------------------------------------------

# make sure that the distribution package contains an assembly jar
# if no assembly jar is found, this will exit with code 1 and fail the build
tar tzvf adam-distribution/target/adam-distribution*-bin.tar.gz | \
    grep adam-assembly | \
    grep jar | \
    grep -v -e sources -e javadoc 
+ grep adam-assembly
+ grep jar
+ tar tzvf adam-distribution/target/adam-distribution-spark3_2.12-0.33.0-SNAPSHOT-bin.tar.gz
+ grep -v -e sources -e javadoc
-rw-r--r-- jenkins/jenkins 45499206 2020-10-19 19:22 adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/repo/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT.jar

# we are done with maven, so clean up the maven temp dir
find ${ADAM_MVN_TMP_DIR}
+ find /tmp/adamTestMvnnKuH0eo
/tmp/adamTestMvnnKuH0eo
/tmp/adamTestMvnnKuH0eo/TempSuite8757555180110737740.adam
/tmp/adamTestMvnnKuH0eo/TempSuite8757555180110737740.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8757555180110737740.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8757555180110737740.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8757555180110737740.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8757555180110737740.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8757555180110737740.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8757555180110737740.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8757555180110737740.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8757555180110737740.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8757555180110737740.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8757555180110737740.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8757555180110737740.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8757555180110737740.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8757555180110737740.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8757555180110737740.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8757555180110737740.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8757555180110737740.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8757555180110737740.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7793262204279046997
/tmp/adamTestMvnnKuH0eo/TempSuite7020820036718060965_2.fq
/tmp/adamTestMvnnKuH0eo/TempSuite7020820036718060965_2.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7020820036718060965_2.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7020820036718060965_2.fq/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite7020820036718060965_2.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1392784756596720124.narrowPeak
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1392784756596720124.narrowPeak/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1392784756596720124.narrowPeak/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1392784756596720124.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1392784756596720124.narrowPeak/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1392784756596720124.narrowPeak/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1392784756596720124.narrowPeak/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1392784756596720124.narrowPeak/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1392784756596720124.narrowPeak/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1392784756596720124.narrowPeak/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1392784756596720124.narrowPeak/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159
/tmp/adamTestMvnnKuH0eo/TempSuite5489255517564441384
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5925624700008039829
/tmp/adamTestMvnnKuH0eo/bqsr1.sam8178598809928782447.sam
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/referenceName=13
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/referenceName=13/positionBin=0/.part-00000-14c3759c-028a-4ffb-b289-dbef50d210b2.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/referenceName=13/positionBin=0/part-00000-14c3759c-028a-4ffb-b289-dbef50d210b2.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/referenceName=2
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/referenceName=2/positionBin=0/.part-00000-14c3759c-028a-4ffb-b289-dbef50d210b2.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/referenceName=2/positionBin=0/part-00000-14c3759c-028a-4ffb-b289-dbef50d210b2.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/referenceName=1
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/referenceName=1/positionBin=0/.part-00000-14c3759c-028a-4ffb-b289-dbef50d210b2.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/referenceName=1/positionBin=0/part-00000-14c3759c-028a-4ffb-b289-dbef50d210b2.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776.adam/_partitionedByStartPos
/tmp/adamTestMvnnKuH0eo/TempSuite648281449513379512
/tmp/adamTestMvnnKuH0eo/TempSuite4090137527215630225
/tmp/adamTestMvnnKuH0eo/TempSuite8562285050967088163.adam
/tmp/adamTestMvnnKuH0eo/TempSuite8562285050967088163.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8562285050967088163.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8562285050967088163.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8562285050967088163.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8562285050967088163.adam/part-00000-496f4039-917a-47f9-91d8-61469eb1e27d-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8562285050967088163.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8562285050967088163.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8562285050967088163.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8562285050967088163.adam/.part-00000-496f4039-917a-47f9-91d8-61469eb1e27d-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8562285050967088163.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8394078654881753692
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5190257123697598741.interval_list
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5190257123697598741.interval_list/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5190257123697598741.interval_list/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5190257123697598741.interval_list/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5190257123697598741.interval_list/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5190257123697598741.interval_list/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5190257123697598741.interval_list/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5190257123697598741.interval_list/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5190257123697598741.interval_list/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5190257123697598741.interval_list/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5190257123697598741.interval_list/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite955423488653943502
/tmp/adamTestMvnnKuH0eo/4031526415012864286
/tmp/adamTestMvnnKuH0eo/4031526415012864286/sorted.lex.vcf
/tmp/adamTestMvnnKuH0eo/4031526415012864286/.sorted.lex.vcf.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3662695019094299909reads12.sam_2
/tmp/adamTestMvnnKuH0eo/TempSuite6706245084358169799
/tmp/adamTestMvnnKuH0eo/trinity.fa1069830015276287468.fa
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287
/tmp/adamTestMvnnKuH0eo/TempSuite1626954595837444403.bed
/tmp/adamTestMvnnKuH0eo/TempSuite1626954595837444403.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1626954595837444403.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1626954595837444403.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite1626954595837444403.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3873077472301708764
/tmp/adamTestMvnnKuH0eo/TempSuite1766244709998220160fragments.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1766244709998220160fragments.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1766244709998220160fragments.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1766244709998220160fragments.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1766244709998220160fragments.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1766244709998220160fragments.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1766244709998220160fragments.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1766244709998220160fragments.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1766244709998220160fragments.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1766244709998220160fragments.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1766244709998220160fragments.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1766244709998220160fragments.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1766244709998220160fragments.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1766244709998220160fragments.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1766244709998220160fragments.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811
/tmp/adamTestMvnnKuH0eo/unordered.sam7124971037317651065.sam
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092
/tmp/adamTestMvnnKuH0eo/javaAC8079436779138813155
/tmp/adamTestMvnnKuH0eo/javaAC8079436779138813155/testRdd.feature.adam
/tmp/adamTestMvnnKuH0eo/javaAC8079436779138813155/testRdd.feature.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC8079436779138813155/testRdd.feature.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC8079436779138813155/testRdd.feature.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC8079436779138813155/testRdd.feature.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC8079436779138813155/testRdd.feature.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/javaAC8079436779138813155/testRdd.feature.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC8079436779138813155/testRdd.feature.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/javaAC8079436779138813155/testRdd.feature.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC8079436779138813155/testRdd.feature.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/javaAC8079436779138813155/testRdd.feature.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC8079436779138813155/testRdd.feature.adam/_metadata
/tmp/adamTestMvnnKuH0eo/javaAC8079436779138813155/testRdd.feature.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC8079436779138813155/testRdd.feature.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/javaAC8079436779138813155/testRdd.feature.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/javaAC8079436779138813155/testRdd.feature.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC8079436779138813155/testRdd.feature.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/javaAC8079436779138813155/testRdd.feature.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC8079436779138813155/testRdd.feature.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3418163045801415341.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3418163045801415341.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3418163045801415341.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3418163045801415341.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3418163045801415341.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3418163045801415341.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3418163045801415341.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3418163045801415341.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3418163045801415341.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3418163045801415341.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3418163045801415341.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3418163045801415341.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite3418163045801415341.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7230831958564751260_1.fq
/tmp/adamTestMvnnKuH0eo/TempSuite7230831958564751260_1.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7230831958564751260_1.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7230831958564751260_1.fq/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite7230831958564751260_1.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5095504494294472918
/tmp/adamTestMvnnKuH0eo/javaAC9180951931352179929
/tmp/adamTestMvnnKuH0eo/javaAC9180951931352179929/testRdd.variant.adam
/tmp/adamTestMvnnKuH0eo/javaAC9180951931352179929/testRdd.variant.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC9180951931352179929/testRdd.variant.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/javaAC9180951931352179929/testRdd.variant.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC9180951931352179929/testRdd.variant.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/javaAC9180951931352179929/testRdd.variant.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/javaAC9180951931352179929/testRdd.variant.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC9180951931352179929/testRdd.variant.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/javaAC9180951931352179929/testRdd.variant.adam/_metadata
/tmp/adamTestMvnnKuH0eo/javaAC9180951931352179929/testRdd.variant.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/javaAC9180951931352179929/testRdd.variant.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/javaAC9180951931352179929/testRdd.variant.adam/_header
/tmp/adamTestMvnnKuH0eo/javaAC9180951931352179929/testRdd.variant.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2818798367700325147.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2818798367700325147.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2818798367700325147.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2818798367700325147.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2818798367700325147.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2818798367700325147.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2818798367700325147.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2818798367700325147.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2818798367700325147.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2818798367700325147.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2818798367700325147.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2818798367700325147.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2818798367700325147.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2818798367700325147.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2818798367700325147.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1702936581920959345.interval_list
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1702936581920959345.interval_list/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1702936581920959345.interval_list/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1702936581920959345.interval_list/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1702936581920959345.interval_list/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1702936581920959345.interval_list/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1702936581920959345.interval_list/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1702936581920959345.interval_list/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1702936581920959345.interval_list/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1702936581920959345.interval_list/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1702936581920959345.interval_list/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/reads128417965870026518356
/tmp/adamTestMvnnKuH0eo/reads128417965870026518356/reads12.fq
/tmp/adamTestMvnnKuH0eo/reads128417965870026518356/reads12.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/reads128417965870026518356/reads12.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/reads128417965870026518356/reads12.fq/part-00000
/tmp/adamTestMvnnKuH0eo/reads128417965870026518356/reads12.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5698741038706618250
/tmp/adamTestMvnnKuH0eo/TempSuite3030624219230005432
/tmp/adamTestMvnnKuH0eo/TempSuite8657198540460308248.adam
/tmp/adamTestMvnnKuH0eo/TempSuite8657198540460308248.adam/part-00000-de04a973-5e44-4842-a6d4-052dd17942c5-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8657198540460308248.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8657198540460308248.adam/.part-00000-de04a973-5e44-4842-a6d4-052dd17942c5-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8657198540460308248.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8657198540460308248.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8657198540460308248.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8657198540460308248.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8657198540460308248.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8657198540460308248.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8657198540460308248.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3548353836243422818.fa
/tmp/adamTestMvnnKuH0eo/TempSuite3548353836243422818.fa/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3548353836243422818.fa/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3548353836243422818.fa/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite3548353836243422818.fa/_SUCCESS
/tmp/adamTestMvnnKuH0eo/2329379213166070697
/tmp/adamTestMvnnKuH0eo/2329379213166070697/.sorted-variants.lex.vcf.crc
/tmp/adamTestMvnnKuH0eo/2329379213166070697/sorted-variants.lex.vcf
/tmp/adamTestMvnnKuH0eo/TempSuite6652183541260829640
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite200452543951283243
/tmp/adamTestMvnnKuH0eo/TempSuite7591898459838149322.adam
/tmp/adamTestMvnnKuH0eo/TempSuite7591898459838149322.adam/.part-00002-67aa8b56-69ba-471d-be47-6b536267531a-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7591898459838149322.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7591898459838149322.adam/.part-00001-67aa8b56-69ba-471d-be47-6b536267531a-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7591898459838149322.adam/part-00000-67aa8b56-69ba-471d-be47-6b536267531a-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7591898459838149322.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7591898459838149322.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7591898459838149322.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7591898459838149322.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7591898459838149322.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7591898459838149322.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7591898459838149322.adam/part-00001-67aa8b56-69ba-471d-be47-6b536267531a-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7591898459838149322.adam/part-00002-67aa8b56-69ba-471d-be47-6b536267531a-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7591898459838149322.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7591898459838149322.adam/.part-00000-67aa8b56-69ba-471d-be47-6b536267531a-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.adam
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5647471374515155122
/tmp/adamTestMvnnKuH0eo/TempSuite7965249753713441586
/tmp/adamTestMvnnKuH0eo/TempSuite6917431599004709834
/tmp/adamTestMvnnKuH0eo/TempSuite6816788012030688206
/tmp/adamTestMvnnKuH0eo/TempSuite4526804160757394290.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4526804160757394290.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4526804160757394290.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4526804160757394290.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4526804160757394290.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4526804160757394290.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4526804160757394290.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4526804160757394290.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4526804160757394290.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4526804160757394290.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4526804160757394290.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4526804160757394290.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4526804160757394290.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4526804160757394290.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4526804160757394290.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4881893752168148380.adam
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4881893752168148380.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4881893752168148380.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4881893752168148380.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4881893752168148380.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4881893752168148380.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4881893752168148380.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4881893752168148380.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4881893752168148380.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4881893752168148380.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4881893752168148380.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4881893752168148380.adam/_metadata
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4881893752168148380.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4881893752168148380.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4881893752168148380.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4881893752168148380.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4881893752168148380.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6668068909199915033.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6668068909199915033.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6668068909199915033.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6668068909199915033.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6668068909199915033.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6668068909199915033.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6668068909199915033.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6668068909199915033.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6668068909199915033.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6668068909199915033.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6668068909199915033.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6668068909199915033.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6668068909199915033.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6668068909199915033.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6668068909199915033.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6668068909199915033.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6668068909199915033.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6668068909199915033.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6668068909199915033.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7462206266444555266
/tmp/adamTestMvnnKuH0eo/TempSuite3030624219230005432.bed
/tmp/adamTestMvnnKuH0eo/TempSuite3030624219230005432.bed/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3030624219230005432.bed/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3030624219230005432.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3030624219230005432.bed/part-00003
/tmp/adamTestMvnnKuH0eo/TempSuite3030624219230005432.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3030624219230005432.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite3030624219230005432.bed/part-00002
/tmp/adamTestMvnnKuH0eo/TempSuite3030624219230005432.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3030624219230005432.bed/part-00001
/tmp/adamTestMvnnKuH0eo/TempSuite3030624219230005432.bed/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8381236930854847698
/tmp/adamTestMvnnKuH0eo/4262510789975595932
/tmp/adamTestMvnnKuH0eo/4262510789975595932/genotypes.adam
/tmp/adamTestMvnnKuH0eo/4262510789975595932/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/4262510789975595932/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/4262510789975595932/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/4262510789975595932/genotypes.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/4262510789975595932/genotypes.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/4262510789975595932/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/4262510789975595932/genotypes.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/4262510789975595932/genotypes.adam/_metadata
/tmp/adamTestMvnnKuH0eo/4262510789975595932/genotypes.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/4262510789975595932/genotypes.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/4262510789975595932/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/4262510789975595932/genotypes.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/4262510789975595932/genotypes.adam/_header
/tmp/adamTestMvnnKuH0eo/4262510789975595932/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite5336378309727263464
/tmp/adamTestMvnnKuH0eo/TempSuite3427362733611526316
/tmp/adamTestMvnnKuH0eo/TempSuite7061973758014322423
/tmp/adamTestMvnnKuH0eo/TempSuite4144302351013821446.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4144302351013821446.adam/.part-00001-d204055b-6711-42b0-ac02-ddd27470f1d4-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4144302351013821446.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4144302351013821446.adam/part-00002-d204055b-6711-42b0-ac02-ddd27470f1d4-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4144302351013821446.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4144302351013821446.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4144302351013821446.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4144302351013821446.adam/.part-00000-d204055b-6711-42b0-ac02-ddd27470f1d4-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4144302351013821446.adam/.part-00002-d204055b-6711-42b0-ac02-ddd27470f1d4-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4144302351013821446.adam/part-00001-d204055b-6711-42b0-ac02-ddd27470f1d4-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4144302351013821446.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4144302351013821446.adam/part-00000-d204055b-6711-42b0-ac02-ddd27470f1d4-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4144302351013821446.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5928605089643330071
/tmp/adamTestMvnnKuH0eo/TempSuite2315572920716594320
/tmp/adamTestMvnnKuH0eo/TempSuite2924319657653947255
/tmp/adamTestMvnnKuH0eo/TempSuite8680074415802689120
/tmp/adamTestMvnnKuH0eo/4649587184219875357
/tmp/adamTestMvnnKuH0eo/4649587184219875357/sorted.vcf
/tmp/adamTestMvnnKuH0eo/4649587184219875357/.sorted.vcf.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7793262204279046997.bam
/tmp/adamTestMvnnKuH0eo/TempSuite7793262204279046997.bam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7793262204279046997.bam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7793262204279046997.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7793262204279046997.bam/part-r-00000.bam
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4766703786689709319
/tmp/adamTestMvnnKuH0eo/TempSuite1526881751412976407
/tmp/adamTestMvnnKuH0eo/TempSuite1699575343340734957
/tmp/adamTestMvnnKuH0eo/TempSuite2032962132626432998
/tmp/adamTestMvnnKuH0eo/TempSuite7454625837771834503.sam
/tmp/adamTestMvnnKuH0eo/5551682950233799210
/tmp/adamTestMvnnKuH0eo/TempSuite7462206266444555266.adam
/tmp/adamTestMvnnKuH0eo/TempSuite7462206266444555266.adam/.part-00001-138db150-3ff8-4346-8288-529d58a4b432-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7462206266444555266.adam/part-00002-138db150-3ff8-4346-8288-529d58a4b432-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7462206266444555266.adam/part-00001-138db150-3ff8-4346-8288-529d58a4b432-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7462206266444555266.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7462206266444555266.adam/part-00000-138db150-3ff8-4346-8288-529d58a4b432-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7462206266444555266.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7462206266444555266.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7462206266444555266.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7462206266444555266.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7462206266444555266.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7462206266444555266.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7462206266444555266.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7462206266444555266.adam/.part-00002-138db150-3ff8-4346-8288-529d58a4b432-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7462206266444555266.adam/.part-00000-138db150-3ff8-4346-8288-529d58a4b432-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1240208832273359642
/tmp/adamTestMvnnKuH0eo/TempSuite1351295538267088067
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite5336378309727263464.fastq
/tmp/adamTestMvnnKuH0eo/TempSuite5012580594660856534.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5012580594660856534.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5012580594660856534.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5012580594660856534.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5012580594660856534.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5012580594660856534.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5012580594660856534.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5012580594660856534.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5012580594660856534.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5012580594660856534.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5012580594660856534.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5012580594660856534.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5012580594660856534.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5012580594660856534.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5012580594660856534.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5012580594660856534.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5012580594660856534.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5012580594660856534.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5012580594660856534.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/551455390635735194
/tmp/adamTestMvnnKuH0eo/551455390635735194/.ordered.sam.crc
/tmp/adamTestMvnnKuH0eo/551455390635735194/ordered.sam
/tmp/adamTestMvnnKuH0eo/random.vcf5298542391468399432.vcf
/tmp/adamTestMvnnKuH0eo/TempSuite1407940613518697250.bed
/tmp/adamTestMvnnKuH0eo/TempSuite1407940613518697250.bed/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1407940613518697250.bed/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1407940613518697250.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1407940613518697250.bed/part-00003
/tmp/adamTestMvnnKuH0eo/TempSuite1407940613518697250.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1407940613518697250.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite1407940613518697250.bed/part-00002
/tmp/adamTestMvnnKuH0eo/TempSuite1407940613518697250.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1407940613518697250.bed/part-00001
/tmp/adamTestMvnnKuH0eo/TempSuite1407940613518697250.bed/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7454625837771834503
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7495320259793044692
/tmp/adamTestMvnnKuH0eo/TempSuite3862652013096404010.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3862652013096404010.adam/.part-00000-f9657f38-2c91-4aac-b1c1-53bbb180760d-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3862652013096404010.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3862652013096404010.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3862652013096404010.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3862652013096404010.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3862652013096404010.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3862652013096404010.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3862652013096404010.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3862652013096404010.adam/part-00000-f9657f38-2c91-4aac-b1c1-53bbb180760d-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3862652013096404010.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2390645016125122227.gff3
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2390645016125122227.gff3/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2390645016125122227.gff3/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2390645016125122227.gff3/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2390645016125122227.gff3/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2390645016125122227.gff3/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2390645016125122227.gff3/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2390645016125122227.gff3/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2390645016125122227.gff3/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2390645016125122227.gff3/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2390645016125122227.gff3/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite7123638151101053831.adam
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite7123638151101053831.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite7123638151101053831.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite7123638151101053831.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite7123638151101053831.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite7123638151101053831.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite7123638151101053831.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite7123638151101053831.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite7123638151101053831.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite7123638151101053831.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite7123638151101053831.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite7123638151101053831.adam/_metadata
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite7123638151101053831.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite7123638151101053831.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite7123638151101053831.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite7123638151101053831.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite7123638151101053831.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6634668471780255602
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6116932884253329715
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/.TempSuite2606131639129823987.sam.crc
/tmp/adamTestMvnnKuH0eo/sorted.sam5844948061993156649.sam
/tmp/adamTestMvnnKuH0eo/TempSuite9198540296410690032.fq
/tmp/adamTestMvnnKuH0eo/TempSuite9198540296410690032.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9198540296410690032.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9198540296410690032.fq/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite9198540296410690032.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/unsorted.sam6424970120622048550.sam
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite1450388302068087572
/tmp/adamTestMvnnKuH0eo/950543781873639320
/tmp/adamTestMvnnKuH0eo/950543781873639320/genotypes.adam
/tmp/adamTestMvnnKuH0eo/950543781873639320/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/950543781873639320/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/950543781873639320/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/950543781873639320/genotypes.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/950543781873639320/genotypes.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/950543781873639320/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/950543781873639320/genotypes.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/950543781873639320/genotypes.adam/_metadata
/tmp/adamTestMvnnKuH0eo/950543781873639320/genotypes.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/950543781873639320/genotypes.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/950543781873639320/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/950543781873639320/genotypes.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/950543781873639320/genotypes.adam/_header
/tmp/adamTestMvnnKuH0eo/950543781873639320/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4344762558635298126
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam/part-r-00004.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam/.part-r-00004.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3958416094310756597.fq
/tmp/adamTestMvnnKuH0eo/TempSuite3958416094310756597.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3958416094310756597.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3958416094310756597.fq/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite3958416094310756597.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2799559549327749437.sam
/tmp/adamTestMvnnKuH0eo/TempSuite2799559549327749437.sam/part-r-00000.sam
/tmp/adamTestMvnnKuH0eo/TempSuite2799559549327749437.sam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2799559549327749437.sam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2799559549327749437.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite2694914685983597324.fastq
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite2694914685983597324.fastq/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite2694914685983597324.fastq/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite2694914685983597324.fastq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite2694914685983597324.fastq/part-00003
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite2694914685983597324.fastq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite2694914685983597324.fastq/part-00000
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite2694914685983597324.fastq/part-00002
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite2694914685983597324.fastq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite2694914685983597324.fastq/part-00001
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite2694914685983597324.fastq/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2013419507736276772
/tmp/adamTestMvnnKuH0eo/TempSuite1972092135364787002
/tmp/adamTestMvnnKuH0eo/TempSuite5714640556656382167
/tmp/adamTestMvnnKuH0eo/TempSuite5928605089643330071.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5928605089643330071.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5928605089643330071.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5928605089643330071.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5928605089643330071.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5928605089643330071.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5928605089643330071.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5928605089643330071.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5928605089643330071.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5928605089643330071.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5928605089643330071.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5928605089643330071.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5928605089643330071.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5928605089643330071.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5928605089643330071.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/6877968910652387495
/tmp/adamTestMvnnKuH0eo/6877968910652387495/.ordered.sam.crc
/tmp/adamTestMvnnKuH0eo/6877968910652387495/ordered.sam
/tmp/adamTestMvnnKuH0eo/TempSuite4720774719809031581.bed
/tmp/adamTestMvnnKuH0eo/TempSuite4720774719809031581.bed/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4720774719809031581.bed/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4720774719809031581.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4720774719809031581.bed/part-00003
/tmp/adamTestMvnnKuH0eo/TempSuite4720774719809031581.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4720774719809031581.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite4720774719809031581.bed/part-00002
/tmp/adamTestMvnnKuH0eo/TempSuite4720774719809031581.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4720774719809031581.bed/part-00001
/tmp/adamTestMvnnKuH0eo/TempSuite4720774719809031581.bed/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1239532241407419501
/tmp/adamTestMvnnKuH0eo/TempSuite8202384502615800497
/tmp/adamTestMvnnKuH0eo/reads4623482758474493816
/tmp/adamTestMvnnKuH0eo/reads4623482758474493816/reads2.fq
/tmp/adamTestMvnnKuH0eo/reads4623482758474493816/reads2.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/reads4623482758474493816/reads2.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/reads4623482758474493816/reads2.fq/part-00000
/tmp/adamTestMvnnKuH0eo/reads4623482758474493816/reads2.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/reads4623482758474493816/reads1.fq
/tmp/adamTestMvnnKuH0eo/reads4623482758474493816/reads1.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/reads4623482758474493816/reads1.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/reads4623482758474493816/reads1.fq/part-00000
/tmp/adamTestMvnnKuH0eo/reads4623482758474493816/reads1.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7723454342955298819.adam
/tmp/adamTestMvnnKuH0eo/TempSuite7723454342955298819.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7723454342955298819.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7723454342955298819.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7723454342955298819.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7723454342955298819.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7723454342955298819.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7723454342955298819.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7723454342955298819.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7723454342955298819.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7723454342955298819.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7723454342955298819.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7723454342955298819.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7723454342955298819.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7723454342955298819.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6566523498399174819
/tmp/adamTestMvnnKuH0eo/TempSuite5908059740091033835
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.2.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.2.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.2.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.2.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.2.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.2.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.2.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.2.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.2.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.2.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.2.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/javaAC2839568520579381064
/tmp/adamTestMvnnKuH0eo/javaAC2839568520579381064/testRdd.genotype.adam
/tmp/adamTestMvnnKuH0eo/javaAC2839568520579381064/testRdd.genotype.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC2839568520579381064/testRdd.genotype.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/javaAC2839568520579381064/testRdd.genotype.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC2839568520579381064/testRdd.genotype.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/javaAC2839568520579381064/testRdd.genotype.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/javaAC2839568520579381064/testRdd.genotype.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC2839568520579381064/testRdd.genotype.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/javaAC2839568520579381064/testRdd.genotype.adam/_metadata
/tmp/adamTestMvnnKuH0eo/javaAC2839568520579381064/testRdd.genotype.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/javaAC2839568520579381064/testRdd.genotype.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/javaAC2839568520579381064/testRdd.genotype.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC2839568520579381064/testRdd.genotype.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/javaAC2839568520579381064/testRdd.genotype.adam/_header
/tmp/adamTestMvnnKuH0eo/javaAC2839568520579381064/testRdd.genotype.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2119932326441993904
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite5130783785638254886
/tmp/adamTestMvnnKuH0eo/TempSuite6977089967776602825.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6977089967776602825.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6977089967776602825.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6977089967776602825.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6977089967776602825.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6977089967776602825.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6977089967776602825.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6977089967776602825.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6977089967776602825.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6977089967776602825.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6977089967776602825.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6977089967776602825.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6977089967776602825.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6977089967776602825.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite6977089967776602825.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1240208832273359642.vcf
/tmp/adamTestMvnnKuH0eo/TempSuite1240208832273359642.vcf/.part-r-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1240208832273359642.vcf/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1240208832273359642.vcf/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1240208832273359642.vcf/part-r-00000
/tmp/adamTestMvnnKuH0eo/reads121719277443532492715
/tmp/adamTestMvnnKuH0eo/reads121719277443532492715/reads12.sam
/tmp/adamTestMvnnKuH0eo/reads121719277443532492715/reads12.sam/part-r-00000.sam
/tmp/adamTestMvnnKuH0eo/reads121719277443532492715/reads12.sam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/reads121719277443532492715/reads12.sam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/reads121719277443532492715/reads12.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2898760669345390967.bed
/tmp/adamTestMvnnKuH0eo/TempSuite2898760669345390967.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2898760669345390967.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2898760669345390967.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite2898760669345390967.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2748610884787985620
/tmp/adamTestMvnnKuH0eo/TempSuite7276887679250370558_2.fq
/tmp/adamTestMvnnKuH0eo/TempSuite7276887679250370558_2.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7276887679250370558_2.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7276887679250370558_2.fq/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite7276887679250370558_2.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5300979982075949533.bed
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5300979982075949533.bed/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5300979982075949533.bed/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5300979982075949533.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5300979982075949533.bed/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5300979982075949533.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5300979982075949533.bed/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5300979982075949533.bed/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5300979982075949533.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5300979982075949533.bed/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5300979982075949533.bed/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7835118467176355289.interval_list
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7835118467176355289.interval_list/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7835118467176355289.interval_list/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7835118467176355289.interval_list/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7835118467176355289.interval_list/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7835118467176355289.interval_list/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7835118467176355289.interval_list/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7835118467176355289.interval_list/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7835118467176355289.interval_list/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7835118467176355289.interval_list/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7835118467176355289.interval_list/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8495364936796331094
/tmp/adamTestMvnnKuH0eo/TempSuite150104863709999255.adam
/tmp/adamTestMvnnKuH0eo/TempSuite150104863709999255.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite150104863709999255.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite150104863709999255.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite150104863709999255.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite150104863709999255.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite150104863709999255.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite150104863709999255.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite150104863709999255.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite150104863709999255.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite150104863709999255.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite150104863709999255.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite150104863709999255.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite150104863709999255.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite150104863709999255.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/trinity.fa4554886990712443084.fa
/tmp/adamTestMvnnKuH0eo/TempSuite6884789922828964649
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4871378389863279407.interval_list
/tmp/adamTestMvnnKuH0eo/TempSuite6634668471780255602.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6634668471780255602.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6634668471780255602.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6634668471780255602.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6634668471780255602.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6634668471780255602.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6634668471780255602.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6634668471780255602.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6634668471780255602.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6634668471780255602.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6634668471780255602.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6634668471780255602.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6634668471780255602.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6634668471780255602.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6634668471780255602.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7149369500235631065
/tmp/adamTestMvnnKuH0eo/TempSuite6668068909199915033
/tmp/adamTestMvnnKuH0eo/TempSuite6816788012030688206.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6816788012030688206.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6816788012030688206.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6816788012030688206.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6816788012030688206.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6816788012030688206.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6816788012030688206.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6816788012030688206.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6816788012030688206.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6816788012030688206.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6816788012030688206.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/javaAC3037142113209094816
/tmp/adamTestMvnnKuH0eo/javaAC3037142113209094816/testRdd.read.adam
/tmp/adamTestMvnnKuH0eo/javaAC3037142113209094816/testRdd.read.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC3037142113209094816/testRdd.read.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/javaAC3037142113209094816/testRdd.read.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC3037142113209094816/testRdd.read.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/javaAC3037142113209094816/testRdd.read.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC3037142113209094816/testRdd.read.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC3037142113209094816/testRdd.read.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/javaAC3037142113209094816/testRdd.read.adam/_metadata
/tmp/adamTestMvnnKuH0eo/javaAC3037142113209094816/testRdd.read.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC3037142113209094816/testRdd.read.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/javaAC3037142113209094816/testRdd.read.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/javaAC3037142113209094816/testRdd.read.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/javaAC3037142113209094816/testRdd.read.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/javaAC3037142113209094816/testRdd.read.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/referenceName=1
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/referenceName=1/positionBin=14/.part-00000-f6d0203b-632e-4387-9bdb-f0247193a2c5.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/referenceName=1/positionBin=14/part-00000-f6d0203b-632e-4387-9bdb-f0247193a2c5.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/referenceName=1/positionBin=169/.part-00001-f6d0203b-632e-4387-9bdb-f0247193a2c5.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/referenceName=1/positionBin=169/part-00001-f6d0203b-632e-4387-9bdb-f0247193a2c5.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/referenceName=1/positionBin=240/.part-00002-f6d0203b-632e-4387-9bdb-f0247193a2c5.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/referenceName=1/positionBin=240/part-00002-f6d0203b-632e-4387-9bdb-f0247193a2c5.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/referenceName=1/positionBin=0/.part-00000-f6d0203b-632e-4387-9bdb-f0247193a2c5.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/referenceName=1/positionBin=0/part-00000-f6d0203b-632e-4387-9bdb-f0247193a2c5.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862.adam/_partitionedByStartPos
/tmp/adamTestMvnnKuH0eo/TempSuite2895827570834504877reads12.sam_2
/tmp/adamTestMvnnKuH0eo/TempSuite2606131639129823987.sam
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7420324932538886494.narrowPeak
/tmp/adamTestMvnnKuH0eo/TempSuite5714640556656382167.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5714640556656382167.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5714640556656382167.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5714640556656382167.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5714640556656382167.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5714640556656382167.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5714640556656382167.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5714640556656382167.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5714640556656382167.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5714640556656382167.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5714640556656382167.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5714640556656382167.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5714640556656382167.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5714640556656382167.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite5714640556656382167.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2049411802317198123.bed
/tmp/adamTestMvnnKuH0eo/TempSuite7061973758014322423.adam
/tmp/adamTestMvnnKuH0eo/TempSuite7061973758014322423.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7061973758014322423.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7061973758014322423.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7061973758014322423.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7061973758014322423.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7061973758014322423.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7061973758014322423.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7061973758014322423.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7061973758014322423.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7061973758014322423.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7061973758014322423.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite7061973758014322423.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9215470869276468320
/tmp/adamTestMvnnKuH0eo/TempSuite8698469067600610471
/tmp/adamTestMvnnKuH0eo/.TempSuite7656023762016838488.bam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7352065841799509469
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5305071538164362261
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062
/tmp/adamTestMvnnKuH0eo/TempSuite3834934461273967451.bed
/tmp/adamTestMvnnKuH0eo/TempSuite3834934461273967451.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3834934461273967451.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3834934461273967451.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite3834934461273967451.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4413412390744441017.bed
/tmp/adamTestMvnnKuH0eo/TempSuite4413412390744441017.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4413412390744441017.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4413412390744441017.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite4413412390744441017.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3607065705713989543
/tmp/adamTestMvnnKuH0eo/496967517395158042
/tmp/adamTestMvnnKuH0eo/496967517395158042/unordered.sam
/tmp/adamTestMvnnKuH0eo/496967517395158042/.unordered.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1766244709998220160
/tmp/adamTestMvnnKuH0eo/TempSuite5272864977059517458.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5272864977059517458.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5272864977059517458.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5272864977059517458.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5272864977059517458.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5272864977059517458.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5272864977059517458.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5272864977059517458.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5272864977059517458.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5272864977059517458.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5272864977059517458.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5272864977059517458.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5272864977059517458.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5272864977059517458.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5272864977059517458.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/.TempSuite7453058419290102611.fq.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1466577754225515000
/tmp/adamTestMvnnKuH0eo/TempSuite2945910962280006928.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2945910962280006928.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2945910962280006928.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2945910962280006928.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2945910962280006928.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2945910962280006928.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2945910962280006928.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2945910962280006928.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2945910962280006928.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2945910962280006928.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2945910962280006928.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2945910962280006928.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite2945910962280006928.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4783365113463169476.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4783365113463169476.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4783365113463169476.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4783365113463169476.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4783365113463169476.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4783365113463169476.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4783365113463169476.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4783365113463169476.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4783365113463169476.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4783365113463169476.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4783365113463169476.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4783365113463169476.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4783365113463169476.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4783365113463169476.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4783365113463169476.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4783365113463169476.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4783365113463169476.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4783365113463169476.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4783365113463169476.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5888970985523781100.bed
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5888970985523781100.bed/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5888970985523781100.bed/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5888970985523781100.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5888970985523781100.bed/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5888970985523781100.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5888970985523781100.bed/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5888970985523781100.bed/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5888970985523781100.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5888970985523781100.bed/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5888970985523781100.bed/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6843794670170161231.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6843794670170161231.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6843794670170161231.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6843794670170161231.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6843794670170161231.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6843794670170161231.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6843794670170161231.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6843794670170161231.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6843794670170161231.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6843794670170161231.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6843794670170161231.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6843794670170161231.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite6843794670170161231.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite907751056987185413
/tmp/adamTestMvnnKuH0eo/sample1.queryname.sam6991175116529052068.queryname.sam
/tmp/adamTestMvnnKuH0eo/3842313365006003820
/tmp/adamTestMvnnKuH0eo/3842313365006003820/.gff3
/tmp/adamTestMvnnKuH0eo/3842313365006003820/..gff3.crc
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.2.adam
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.2.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.2.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.2.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.2.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.2.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.2.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.2.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.2.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.2.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743.2.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/1464553551345822294
/tmp/adamTestMvnnKuH0eo/1464553551345822294/unordered.sam
/tmp/adamTestMvnnKuH0eo/1464553551345822294/.unordered.sam.crc
/tmp/adamTestMvnnKuH0eo/.SliceDatasetSuite1614790695275433066.fasta.crc
/tmp/adamTestMvnnKuH0eo/TempSuite871769442135603914
/tmp/adamTestMvnnKuH0eo/TempSuite1972092135364787002.bed
/tmp/adamTestMvnnKuH0eo/TempSuite1972092135364787002.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1972092135364787002.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1972092135364787002.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite1972092135364787002.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite2694914685983597324
/tmp/adamTestMvnnKuH0eo/small.sam2200031569728643445.sam
/tmp/adamTestMvnnKuH0eo/TempSuite4414374350110663762
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5254687674082430222.narrowPeak
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5254687674082430222.narrowPeak/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5254687674082430222.narrowPeak/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5254687674082430222.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5254687674082430222.narrowPeak/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5254687674082430222.narrowPeak/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5254687674082430222.narrowPeak/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5254687674082430222.narrowPeak/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5254687674082430222.narrowPeak/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5254687674082430222.narrowPeak/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5254687674082430222.narrowPeak/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5318629884011019053_1.fq
/tmp/adamTestMvnnKuH0eo/TempSuite5489255517564441384.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5489255517564441384.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5489255517564441384.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5489255517564441384.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5489255517564441384.adam/part-00000-b05c3b0a-bd9a-4436-9c4e-8dc5230999ba-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5489255517564441384.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5489255517564441384.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5489255517564441384.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5489255517564441384.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5489255517564441384.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5489255517564441384.adam/.part-00000-b05c3b0a-bd9a-4436-9c4e-8dc5230999ba-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1082284876115837451
/tmp/adamTestMvnnKuH0eo/TempSuite2791057831890143252.bam
/tmp/adamTestMvnnKuH0eo/TempSuite4144302351013821446
/tmp/adamTestMvnnKuH0eo/TempSuite7275653854924633761
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8394078654881753692.interval_list
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8394078654881753692.interval_list/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8394078654881753692.interval_list/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8394078654881753692.interval_list/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8394078654881753692.interval_list/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8394078654881753692.interval_list/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8394078654881753692.interval_list/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8394078654881753692.interval_list/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8394078654881753692.interval_list/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8394078654881753692.interval_list/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8394078654881753692.interval_list/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6508006508536500212
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite4886542981253913458.adam
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite4886542981253913458.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite4886542981253913458.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite4886542981253913458.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite4886542981253913458.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite4886542981253913458.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite4886542981253913458.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite4886542981253913458.adam/_metadata
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite4886542981253913458.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite4886542981253913458.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite4886542981253913458.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite4886542981253913458.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite4886542981253913458.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/7518336642221834424
/tmp/adamTestMvnnKuH0eo/7518336642221834424/sorted.vcf
/tmp/adamTestMvnnKuH0eo/7518336642221834424/.sorted.vcf.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1522578231126887664.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1522578231126887664.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1522578231126887664.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1522578231126887664.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1522578231126887664.adam/part-00000-02406d40-1e9c-433c-b675-578653bbe582-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1522578231126887664.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1522578231126887664.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1522578231126887664.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1522578231126887664.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1522578231126887664.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite1522578231126887664.adam/.part-00000-02406d40-1e9c-433c-b675-578653bbe582-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/small.vcf5635364551012807599.vcf
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3579512120566682180.narrowPeak
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3579512120566682180.narrowPeak/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3579512120566682180.narrowPeak/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3579512120566682180.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3579512120566682180.narrowPeak/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3579512120566682180.narrowPeak/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3579512120566682180.narrowPeak/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3579512120566682180.narrowPeak/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3579512120566682180.narrowPeak/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3579512120566682180.narrowPeak/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3579512120566682180.narrowPeak/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/.FeatureDatasetFunctionsSuite7660693963005115546.narrowPeak.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3873077472301708764.sam
/tmp/adamTestMvnnKuH0eo/TempSuite4774460287384491247.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4774460287384491247.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4774460287384491247.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4774460287384491247.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4774460287384491247.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4774460287384491247.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4774460287384491247.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4774460287384491247.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4774460287384491247.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4774460287384491247.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4774460287384491247.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4774460287384491247.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4774460287384491247.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4774460287384491247.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite4774460287384491247.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4616708796648912503.adam
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4616708796648912503.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4616708796648912503.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4616708796648912503.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4616708796648912503.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4616708796648912503.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4616708796648912503.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4616708796648912503.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4616708796648912503.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4616708796648912503.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4616708796648912503.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4616708796648912503.adam/_metadata
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4616708796648912503.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4616708796648912503.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4616708796648912503.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4616708796648912503.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4616708796648912503.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6403624312461759731.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6403624312461759731.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6403624312461759731.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6403624312461759731.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6403624312461759731.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6403624312461759731.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6403624312461759731.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6403624312461759731.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6403624312461759731.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6403624312461759731.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6403624312461759731.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6403624312461759731.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6403624312461759731.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6403624312461759731.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite6403624312461759731.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3296029779124089628.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3296029779124089628.adam/part-00002-9270e89c-6d41-4df1-a299-0bb4cc96081c-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3296029779124089628.adam/.part-00000-9270e89c-6d41-4df1-a299-0bb4cc96081c-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3296029779124089628.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3296029779124089628.adam/.part-00001-9270e89c-6d41-4df1-a299-0bb4cc96081c-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3296029779124089628.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3296029779124089628.adam/part-00001-9270e89c-6d41-4df1-a299-0bb4cc96081c-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3296029779124089628.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3296029779124089628.adam/.part-00002-9270e89c-6d41-4df1-a299-0bb4cc96081c-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3296029779124089628.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3296029779124089628.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3296029779124089628.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3296029779124089628.adam/part-00000-9270e89c-6d41-4df1-a299-0bb4cc96081c-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3925835553749926688
/tmp/adamTestMvnnKuH0eo/TempSuite3607065705713989543.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3607065705713989543.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3607065705713989543.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3607065705713989543.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3607065705713989543.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3607065705713989543.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3607065705713989543.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3607065705713989543.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3607065705713989543.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3607065705713989543.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3607065705713989543.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3607065705713989543.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite3607065705713989543.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/2481186194068226604
/tmp/adamTestMvnnKuH0eo/2481186194068226604/.gff3
/tmp/adamTestMvnnKuH0eo/2481186194068226604/..gff3.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite6043284895554192087.fastq
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite6043284895554192087.fastq/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite6043284895554192087.fastq/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite6043284895554192087.fastq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite6043284895554192087.fastq/part-00003
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite6043284895554192087.fastq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite6043284895554192087.fastq/part-00000
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite6043284895554192087.fastq/part-00002
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite6043284895554192087.fastq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite6043284895554192087.fastq/part-00001
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite6043284895554192087.fastq/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3662695019094299909
/tmp/adamTestMvnnKuH0eo/6750863744440832200
/tmp/adamTestMvnnKuH0eo/6750863744440832200/genotypes.nested-annotations.adam
/tmp/adamTestMvnnKuH0eo/6750863744440832200/genotypes.nested-annotations.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/6750863744440832200/genotypes.nested-annotations.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/6750863744440832200/genotypes.nested-annotations.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/6750863744440832200/genotypes.nested-annotations.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/6750863744440832200/genotypes.nested-annotations.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/6750863744440832200/genotypes.nested-annotations.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/6750863744440832200/genotypes.nested-annotations.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/6750863744440832200/genotypes.nested-annotations.adam/_metadata
/tmp/adamTestMvnnKuH0eo/6750863744440832200/genotypes.nested-annotations.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/6750863744440832200/genotypes.nested-annotations.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/6750863744440832200/genotypes.nested-annotations.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/6750863744440832200/genotypes.nested-annotations.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/6750863744440832200/genotypes.nested-annotations.adam/_header
/tmp/adamTestMvnnKuH0eo/6750863744440832200/genotypes.nested-annotations.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/3221459820851814217
/tmp/adamTestMvnnKuH0eo/3221459820851814217/unordered.adam
/tmp/adamTestMvnnKuH0eo/3221459820851814217/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/3221459820851814217/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/3221459820851814217/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/3221459820851814217/unordered.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/3221459820851814217/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/3221459820851814217/unordered.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/3221459820851814217/unordered.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/3221459820851814217/unordered.adam/_metadata
/tmp/adamTestMvnnKuH0eo/3221459820851814217/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/3221459820851814217/unordered.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/3221459820851814217/unordered.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/3221459820851814217/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/3221459820851814217/unordered.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/3221459820851814217/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite3106942022523841676
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6116932884253329715.interval_list
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6116932884253329715.interval_list/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6116932884253329715.interval_list/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6116932884253329715.interval_list/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6116932884253329715.interval_list/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6116932884253329715.interval_list/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6116932884253329715.interval_list/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6116932884253329715.interval_list/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6116932884253329715.interval_list/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6116932884253329715.interval_list/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6116932884253329715.interval_list/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9012254506733325292
/tmp/adamTestMvnnKuH0eo/TempSuite6151284774004937904.bed
/tmp/adamTestMvnnKuH0eo/TempSuite6151284774004937904.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6151284774004937904.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6151284774004937904.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite6151284774004937904.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/.FeatureDatasetFunctionsSuite2049411802317198123.bed.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4636224177888108645.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4636224177888108645.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4636224177888108645.adam/.part-00000-cdc06bf0-53a3-4d85-a642-37c9a768cad1-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4636224177888108645.adam/part-00000-cdc06bf0-53a3-4d85-a642-37c9a768cad1-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4636224177888108645.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4636224177888108645.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4636224177888108645.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4636224177888108645.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4636224177888108645.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4636224177888108645.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4636224177888108645.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2071443152819087641
/tmp/adamTestMvnnKuH0eo/TempSuite3971400444138641728.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3971400444138641728.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3971400444138641728.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3971400444138641728.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3971400444138641728.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3971400444138641728.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3971400444138641728.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3971400444138641728.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3971400444138641728.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3971400444138641728.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3971400444138641728.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3971400444138641728.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3971400444138641728.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3971400444138641728.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite3971400444138641728.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2994344869608914568.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2994344869608914568.adam/.part-00000-a68394c2-e8e5-4799-a118-5a0ca7a5bcbf-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2994344869608914568.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2994344869608914568.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2994344869608914568.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2994344869608914568.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2994344869608914568.adam/part-00000-a68394c2-e8e5-4799-a118-5a0ca7a5bcbf-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6832983300282864920.bed
/tmp/adamTestMvnnKuH0eo/TempSuite6832983300282864920.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6832983300282864920.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6832983300282864920.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite6832983300282864920.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/6962184079868792427
/tmp/adamTestMvnnKuH0eo/6962184079868792427/coverage.adam
/tmp/adamTestMvnnKuH0eo/6962184079868792427/coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/6962184079868792427/coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/6962184079868792427/coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/6962184079868792427/coverage.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/6962184079868792427/coverage.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/6962184079868792427/coverage.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/6962184079868792427/coverage.adam/_metadata
/tmp/adamTestMvnnKuH0eo/6962184079868792427/coverage.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/6962184079868792427/coverage.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/6962184079868792427/coverage.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/6962184079868792427/coverage.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/6962184079868792427/coverage.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7790959667754024668.interval_list
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7790959667754024668.interval_list/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7790959667754024668.interval_list/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7790959667754024668.interval_list/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7790959667754024668.interval_list/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7790959667754024668.interval_list/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7790959667754024668.interval_list/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7790959667754024668.interval_list/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7790959667754024668.interval_list/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7790959667754024668.interval_list/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7790959667754024668.interval_list/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/.FeatureDatasetFunctionsSuite5797507120617460866.bed.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2083211527780483005.sam
/tmp/adamTestMvnnKuH0eo/TempSuite2083211527780483005.sam/part-r-00000.sam
/tmp/adamTestMvnnKuH0eo/TempSuite2083211527780483005.sam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2083211527780483005.sam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2083211527780483005.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite733401243922051821.fq
/tmp/adamTestMvnnKuH0eo/TempSuite733401243922051821.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite733401243922051821.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite733401243922051821.fq/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite733401243922051821.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8119528623509163677
/tmp/adamTestMvnnKuH0eo/TempSuite1927676996524832143.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1927676996524832143.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1927676996524832143.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1927676996524832143.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1927676996524832143.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1927676996524832143.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1927676996524832143.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1927676996524832143.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1927676996524832143.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1927676996524832143.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1927676996524832143.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1927676996524832143.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite1927676996524832143.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8757555180110737740
/tmp/adamTestMvnnKuH0eo/1430110242689598075
/tmp/adamTestMvnnKuH0eo/1430110242689598075/binned.adam
/tmp/adamTestMvnnKuH0eo/1430110242689598075/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/1430110242689598075/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/1430110242689598075/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/1430110242689598075/binned.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/1430110242689598075/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/1430110242689598075/binned.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/1430110242689598075/binned.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/1430110242689598075/binned.adam/_metadata
/tmp/adamTestMvnnKuH0eo/1430110242689598075/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/1430110242689598075/binned.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/1430110242689598075/binned.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/1430110242689598075/binned.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/1430110242689598075/binned.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/1430110242689598075/binned.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/random.vcf3832373691947560767.vcf
/tmp/adamTestMvnnKuH0eo/5859284716011496723
/tmp/adamTestMvnnKuH0eo/5859284716011496723/sorted-variants.vcf
/tmp/adamTestMvnnKuH0eo/5859284716011496723/.sorted-variants.vcf.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1199013176938144826
/tmp/adamTestMvnnKuH0eo/TempSuite2606131639129823987
/tmp/adamTestMvnnKuH0eo/TempSuite8482381543408597007
/tmp/adamTestMvnnKuH0eo/7300362269787441347
/tmp/adamTestMvnnKuH0eo/7300362269787441347/binned.adam
/tmp/adamTestMvnnKuH0eo/7300362269787441347/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/7300362269787441347/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/7300362269787441347/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/7300362269787441347/binned.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/7300362269787441347/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/7300362269787441347/binned.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/7300362269787441347/binned.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/7300362269787441347/binned.adam/_metadata
/tmp/adamTestMvnnKuH0eo/7300362269787441347/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/7300362269787441347/binned.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/7300362269787441347/binned.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/7300362269787441347/binned.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/7300362269787441347/binned.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/7300362269787441347/binned.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8272961407288036547.bed
/tmp/adamTestMvnnKuH0eo/TempSuite8272961407288036547.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8272961407288036547.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8272961407288036547.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite8272961407288036547.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/unordered.sam6337152280222507166.sam
/tmp/adamTestMvnnKuH0eo/TempSuite485713062208246553.adam
/tmp/adamTestMvnnKuH0eo/TempSuite485713062208246553.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite485713062208246553.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite485713062208246553.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite485713062208246553.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite485713062208246553.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite485713062208246553.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite485713062208246553.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite485713062208246553.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite485713062208246553.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite485713062208246553.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite485713062208246553.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite485713062208246553.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite485713062208246553.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite485713062208246553.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite485713062208246553.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite485713062208246553.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite485713062208246553.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite485713062208246553.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3490770450624866342
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite926776874042234127.gtf
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite926776874042234127.gtf/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite926776874042234127.gtf/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite926776874042234127.gtf/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite926776874042234127.gtf/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite926776874042234127.gtf/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite926776874042234127.gtf/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite926776874042234127.gtf/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite926776874042234127.gtf/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite926776874042234127.gtf/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite926776874042234127.gtf/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2142776786432996726.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2142776786432996726.adam/.part-00000-67cf5de6-aee5-4612-9aed-db77e71b3ffe-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2142776786432996726.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2142776786432996726.adam/part-00000-67cf5de6-aee5-4612-9aed-db77e71b3ffe-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2142776786432996726.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2142776786432996726.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2142776786432996726.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2142776786432996726.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2142776786432996726.adam/_header
/tmp/adamTestMvnnKuH0eo/8353938147688680158
/tmp/adamTestMvnnKuH0eo/8353938147688680158/out.cram_head
/tmp/adamTestMvnnKuH0eo/8353938147688680158/out.cram_tail
/tmp/adamTestMvnnKuH0eo/8353938147688680158/out.cram_tail/.part-r-00001.cram.crc
/tmp/adamTestMvnnKuH0eo/8353938147688680158/out.cram_tail/.part-r-00003.cram.crc
/tmp/adamTestMvnnKuH0eo/8353938147688680158/out.cram_tail/part-r-00000.cram
/tmp/adamTestMvnnKuH0eo/8353938147688680158/out.cram_tail/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/8353938147688680158/out.cram_tail/.part-r-00002.cram.crc
/tmp/adamTestMvnnKuH0eo/8353938147688680158/out.cram_tail/part-r-00002.cram
/tmp/adamTestMvnnKuH0eo/8353938147688680158/out.cram_tail/_SUCCESS
/tmp/adamTestMvnnKuH0eo/8353938147688680158/out.cram_tail/.part-r-00000.cram.crc
/tmp/adamTestMvnnKuH0eo/8353938147688680158/out.cram_tail/part-r-00001.cram
/tmp/adamTestMvnnKuH0eo/8353938147688680158/out.cram_tail/part-r-00003.cram
/tmp/adamTestMvnnKuH0eo/8353938147688680158/.out.cram.crc
/tmp/adamTestMvnnKuH0eo/8353938147688680158/out.cram
/tmp/adamTestMvnnKuH0eo/8353938147688680158/.out.cram_head.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7275653854924633761.adam
/tmp/adamTestMvnnKuH0eo/TempSuite7275653854924633761.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7275653854924633761.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7275653854924633761.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7275653854924633761.adam/part-00000-49c8c57a-f76f-4cda-9cbe-54f0f6e29b2c-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7275653854924633761.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7275653854924633761.adam/.part-00000-49c8c57a-f76f-4cda-9cbe-54f0f6e29b2c-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2072524861807849275
/tmp/adamTestMvnnKuH0eo/TempSuite1805323908465545563.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1805323908465545563.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1805323908465545563.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1805323908465545563.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1805323908465545563.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1805323908465545563.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1805323908465545563.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1805323908465545563.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1805323908465545563.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1805323908465545563.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1805323908465545563.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1805323908465545563.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1805323908465545563.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1805323908465545563.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1805323908465545563.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3187179379453006607_2.fq
/tmp/adamTestMvnnKuH0eo/TempSuite3187179379453006607_2.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3187179379453006607_2.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3187179379453006607_2.fq/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite3187179379453006607_2.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7289872161589331255
/tmp/adamTestMvnnKuH0eo/TempSuite3958416094310756597
/tmp/adamTestMvnnKuH0eo/TempSuite4375089485533500759
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8865600155452596467
/tmp/adamTestMvnnKuH0eo/TempSuite6622717885136376270
/tmp/adamTestMvnnKuH0eo/TempSuite4462946966199699598.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4462946966199699598.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4462946966199699598.adam/part-00000-bcd9f834-ada9-4347-84f2-8c5fc4d6c843-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4462946966199699598.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4462946966199699598.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4462946966199699598.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4462946966199699598.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4462946966199699598.adam/.part-00000-bcd9f834-ada9-4347-84f2-8c5fc4d6c843-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4462946966199699598.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4462946966199699598.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4462946966199699598.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/random.vcf1042689852510525126.vcf
/tmp/adamTestMvnnKuH0eo/TempSuite5908059740091033835.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5908059740091033835.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5908059740091033835.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5908059740091033835.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5908059740091033835.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5908059740091033835.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5908059740091033835.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5908059740091033835.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5908059740091033835.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5908059740091033835.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5908059740091033835.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5908059740091033835.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite5908059740091033835.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5530840477427609717.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5530840477427609717.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5530840477427609717.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5530840477427609717.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5530840477427609717.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5530840477427609717.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5530840477427609717.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5530840477427609717.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5530840477427609717.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5530840477427609717.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5530840477427609717.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5530840477427609717.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5530840477427609717.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5530840477427609717.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5530840477427609717.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite568754959737747421.fa
/tmp/adamTestMvnnKuH0eo/TempSuite568754959737747421.fa/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite568754959737747421.fa/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite568754959737747421.fa/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite568754959737747421.fa/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8325180154904737388.adam
/tmp/adamTestMvnnKuH0eo/TempSuite8325180154904737388.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8325180154904737388.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8325180154904737388.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8325180154904737388.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8325180154904737388.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8325180154904737388.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8325180154904737388.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8325180154904737388.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8325180154904737388.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8325180154904737388.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8325180154904737388.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite8325180154904737388.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2767017422881983428.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2767017422881983428.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2767017422881983428.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2767017422881983428.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2767017422881983428.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2767017422881983428.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2767017422881983428.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2767017422881983428.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2767017422881983428.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2767017422881983428.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2767017422881983428.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2767017422881983428.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2767017422881983428.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2767017422881983428.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2767017422881983428.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2767017422881983428.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2767017422881983428.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2767017422881983428.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite2767017422881983428.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite9167136985606598693.adam
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite9167136985606598693.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite9167136985606598693.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite9167136985606598693.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite9167136985606598693.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite9167136985606598693.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite9167136985606598693.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite9167136985606598693.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite9167136985606598693.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite9167136985606598693.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite9167136985606598693.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite9167136985606598693.adam/_metadata
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite9167136985606598693.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite9167136985606598693.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite9167136985606598693.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite9167136985606598693.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite9167136985606598693.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2346300622420657749
/tmp/adamTestMvnnKuH0eo/TempSuite4134554858897078204
/tmp/adamTestMvnnKuH0eo/TempSuite3316838948665865165
/tmp/adamTestMvnnKuH0eo/TempSuite8006236155160178458
/tmp/adamTestMvnnKuH0eo/TempSuite3947085836274223694
/tmp/adamTestMvnnKuH0eo/TempSuite3707640323980875476.bed
/tmp/adamTestMvnnKuH0eo/TempSuite3707640323980875476.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3707640323980875476.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3707640323980875476.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite3707640323980875476.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1246725759441020600
/tmp/adamTestMvnnKuH0eo/3248263667110531751
/tmp/adamTestMvnnKuH0eo/3248263667110531751/.small.vcf.bgz.crc
/tmp/adamTestMvnnKuH0eo/3248263667110531751/small.vcf.bgz
/tmp/adamTestMvnnKuH0eo/TempSuite6706245084358169799.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6706245084358169799.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6706245084358169799.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6706245084358169799.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6706245084358169799.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6706245084358169799.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6706245084358169799.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6706245084358169799.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6706245084358169799.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6706245084358169799.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6706245084358169799.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6706245084358169799.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite6706245084358169799.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/bqsr1.sam4766232599854352898.sam
/tmp/adamTestMvnnKuH0eo/TempSuite1351295538267088067_2.fq
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6096008050621725860
/tmp/adamTestMvnnKuH0eo/TempSuite5935972348837733739.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5935972348837733739.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5935972348837733739.adam/part-00000-c41801eb-09e6-469c-9d64-df2d4939b8d8-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5935972348837733739.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5935972348837733739.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5935972348837733739.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5935972348837733739.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5935972348837733739.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5935972348837733739.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5935972348837733739.adam/.part-00000-c41801eb-09e6-469c-9d64-df2d4939b8d8-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5935972348837733739.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6566523498399174819.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6566523498399174819.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6566523498399174819.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6566523498399174819.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6566523498399174819.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6566523498399174819.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6566523498399174819.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6566523498399174819.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6566523498399174819.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6566523498399174819.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6566523498399174819.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6566523498399174819.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite6566523498399174819.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite3106942022523841676.fasta
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite3106942022523841676.fasta/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite3106942022523841676.fasta/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite3106942022523841676.fasta/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite3106942022523841676.fasta/part-00003
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite3106942022523841676.fasta/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite3106942022523841676.fasta/part-00000
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite3106942022523841676.fasta/part-00002
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite3106942022523841676.fasta/_SUCCESS
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite3106942022523841676.fasta/part-00001
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite3106942022523841676.fasta/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/bqsr1.sam6427846607220063375.sam
/tmp/adamTestMvnnKuH0eo/TempSuite3862652013096404010
/tmp/adamTestMvnnKuH0eo/TempSuite2799559549327749437
/tmp/adamTestMvnnKuH0eo/7251766237773427217
/tmp/adamTestMvnnKuH0eo/7251766237773427217/predicate.1.adam
/tmp/adamTestMvnnKuH0eo/7251766237773427217/predicate.1.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/7251766237773427217/predicate.1.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/7251766237773427217/predicate.1.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/7251766237773427217/predicate.1.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/7251766237773427217/predicate.1.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/7251766237773427217/predicate.1.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/7251766237773427217/predicate.1.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/7251766237773427217/predicate.1.adam/_metadata
/tmp/adamTestMvnnKuH0eo/7251766237773427217/predicate.1.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/7251766237773427217/predicate.1.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/7251766237773427217/predicate.1.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/7251766237773427217/predicate.1.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/7251766237773427217/predicate.1.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/7251766237773427217/predicate.1.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6002549116949682811
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4616708796648912503
/tmp/adamTestMvnnKuH0eo/TempSuite1233603653535310546
/tmp/adamTestMvnnKuH0eo/265247042839776087
/tmp/adamTestMvnnKuH0eo/265247042839776087/variants.lex.adam
/tmp/adamTestMvnnKuH0eo/265247042839776087/variants.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/265247042839776087/variants.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/265247042839776087/variants.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/265247042839776087/variants.lex.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/265247042839776087/variants.lex.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/265247042839776087/variants.lex.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/265247042839776087/variants.lex.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/265247042839776087/variants.lex.adam/_metadata
/tmp/adamTestMvnnKuH0eo/265247042839776087/variants.lex.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/265247042839776087/variants.lex.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/265247042839776087/variants.lex.adam/_header
/tmp/adamTestMvnnKuH0eo/265247042839776087/variants.lex.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/sample1.queryname.sam5960723129159427560.queryname.sam
/tmp/adamTestMvnnKuH0eo/javaAC2661071239635647597
/tmp/adamTestMvnnKuH0eo/javaAC2661071239635647597/testRdd.slices.adam
/tmp/adamTestMvnnKuH0eo/javaAC2661071239635647597/testRdd.slices.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC2661071239635647597/testRdd.slices.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/javaAC2661071239635647597/testRdd.slices.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC2661071239635647597/testRdd.slices.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/javaAC2661071239635647597/testRdd.slices.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC2661071239635647597/testRdd.slices.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/javaAC2661071239635647597/testRdd.slices.adam/_metadata
/tmp/adamTestMvnnKuH0eo/javaAC2661071239635647597/testRdd.slices.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/javaAC2661071239635647597/testRdd.slices.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/javaAC2661071239635647597/testRdd.slices.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3296029779124089628
/tmp/adamTestMvnnKuH0eo/javaAC1237717150926259404
/tmp/adamTestMvnnKuH0eo/javaAC1237717150926259404/testRdd.read.adam
/tmp/adamTestMvnnKuH0eo/javaAC1237717150926259404/testRdd.read.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC1237717150926259404/testRdd.read.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/javaAC1237717150926259404/testRdd.read.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC1237717150926259404/testRdd.read.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/javaAC1237717150926259404/testRdd.read.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC1237717150926259404/testRdd.read.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC1237717150926259404/testRdd.read.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/javaAC1237717150926259404/testRdd.read.adam/_metadata
/tmp/adamTestMvnnKuH0eo/javaAC1237717150926259404/testRdd.read.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC1237717150926259404/testRdd.read.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/javaAC1237717150926259404/testRdd.read.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/javaAC1237717150926259404/testRdd.read.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/javaAC1237717150926259404/testRdd.read.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/javaAC1237717150926259404/testRdd.read.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6508006508536500212.fa
/tmp/adamTestMvnnKuH0eo/TempSuite6508006508536500212.fa/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6508006508536500212.fa/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6508006508536500212.fa/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite6508006508536500212.fa/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8972955449199107340.gtf
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8972955449199107340.gtf/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8972955449199107340.gtf/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8972955449199107340.gtf/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8972955449199107340.gtf/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8972955449199107340.gtf/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8972955449199107340.gtf/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8972955449199107340.gtf/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8972955449199107340.gtf/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8972955449199107340.gtf/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8972955449199107340.gtf/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2049411802317198123
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7420324932538886494
/tmp/adamTestMvnnKuH0eo/TempSuite7765010778891873652.bed
/tmp/adamTestMvnnKuH0eo/TempSuite7765010778891873652.bed/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7765010778891873652.bed/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7765010778891873652.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7765010778891873652.bed/part-00003
/tmp/adamTestMvnnKuH0eo/TempSuite7765010778891873652.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7765010778891873652.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite7765010778891873652.bed/part-00002
/tmp/adamTestMvnnKuH0eo/TempSuite7765010778891873652.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7765010778891873652.bed/part-00001
/tmp/adamTestMvnnKuH0eo/TempSuite7765010778891873652.bed/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2255949746064549299
/tmp/adamTestMvnnKuH0eo/bqsr12859281055288303527
/tmp/adamTestMvnnKuH0eo/bqsr12859281055288303527/.bqsr1.sam.crc
/tmp/adamTestMvnnKuH0eo/bqsr12859281055288303527/bqsr1.sam
/tmp/adamTestMvnnKuH0eo/1603160324778-0
/tmp/adamTestMvnnKuH0eo/1603160324778-0/bqsr1-r2.fq
/tmp/adamTestMvnnKuH0eo/1603160324778-0/bqsr1-r2.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/1603160324778-0/bqsr1-r2.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/1603160324778-0/bqsr1-r2.fq/part-00000
/tmp/adamTestMvnnKuH0eo/1603160324778-0/bqsr1-r2.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/1603160324778-0/bqsr1-r1.fq
/tmp/adamTestMvnnKuH0eo/1603160324778-0/bqsr1-r1.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/1603160324778-0/bqsr1-r1.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/1603160324778-0/bqsr1-r1.fq/part-00000
/tmp/adamTestMvnnKuH0eo/1603160324778-0/bqsr1-r1.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3548353836243422818
/tmp/adamTestMvnnKuH0eo/TempSuite8731085637387038122
/tmp/adamTestMvnnKuH0eo/TempSuite6622717885136376270.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6622717885136376270.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6622717885136376270.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6622717885136376270.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6622717885136376270.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6622717885136376270.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6622717885136376270.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6622717885136376270.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6622717885136376270.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6622717885136376270.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6622717885136376270.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6622717885136376270.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6622717885136376270.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6622717885136376270.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6622717885136376270.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite350424275408834623
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3787467138993705791
/tmp/adamTestMvnnKuH0eo/TempSuite886322044938792652
/tmp/adamTestMvnnKuH0eo/1603159792992-0
/tmp/adamTestMvnnKuH0eo/1603159792992-0/bamReads.adam
/tmp/adamTestMvnnKuH0eo/1603159792992-0/bamReads.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/1603159792992-0/bamReads.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/1603159792992-0/bamReads.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/1603159792992-0/bamReads.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/1603159792992-0/bamReads.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/1603159792992-0/bamReads.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/1603159792992-0/bamReads.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/1603159792992-0/bamReads.adam/_metadata
/tmp/adamTestMvnnKuH0eo/1603159792992-0/bamReads.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/1603159792992-0/bamReads.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/1603159792992-0/bamReads.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/1603159792992-0/bamReads.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/1603159792992-0/bamReads.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/1603159792992-0/bamReads.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2245431758329828535.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2245431758329828535.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2245431758329828535.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2245431758329828535.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2245431758329828535.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2245431758329828535.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2245431758329828535.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2245431758329828535.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2245431758329828535.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2245431758329828535.adam/referenceName=1
/tmp/adamTestMvnnKuH0eo/TempSuite2245431758329828535.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnnKuH0eo/TempSuite2245431758329828535.adam/referenceName=1/positionBin=0/.part-00000-ff0fcb2e-433f-4975-aace-345a05c70c25.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2245431758329828535.adam/referenceName=1/positionBin=0/part-00000-ff0fcb2e-433f-4975-aace-345a05c70c25.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2245431758329828535.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite2245431758329828535.adam/_partitionedByStartPos
/tmp/adamTestMvnnKuH0eo/TempSuite2895827570834504877reads12.sam
/tmp/adamTestMvnnKuH0eo/TempSuite8255607497645361833
/tmp/adamTestMvnnKuH0eo/TempSuite8775148016854746538.adam
/tmp/adamTestMvnnKuH0eo/TempSuite8775148016854746538.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8775148016854746538.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8775148016854746538.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8775148016854746538.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8775148016854746538.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8775148016854746538.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8775148016854746538.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8775148016854746538.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8775148016854746538.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8775148016854746538.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8775148016854746538.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8775148016854746538.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8775148016854746538.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8775148016854746538.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4526804160757394290
/tmp/adamTestMvnnKuH0eo/5367835707250664106
/tmp/adamTestMvnnKuH0eo/5367835707250664106/tag.sam
/tmp/adamTestMvnnKuH0eo/5367835707250664106/.tag.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7735590079393032634.adam
/tmp/adamTestMvnnKuH0eo/TempSuite7735590079393032634.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7735590079393032634.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7735590079393032634.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7735590079393032634.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7735590079393032634.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7735590079393032634.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7735590079393032634.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7735590079393032634.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7735590079393032634.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7735590079393032634.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7735590079393032634.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7735590079393032634.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7735590079393032634.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7735590079393032634.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/sorted-variants.vcf7192969365263562947.vcf
/tmp/adamTestMvnnKuH0eo/TempSuite8098417799638501356
/tmp/adamTestMvnnKuH0eo/TempSuite3378562552057308688
/tmp/adamTestMvnnKuH0eo/sorted-variants.lex.vcf396812777494723060.lex.vcf
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite6467424259481691166
/tmp/adamTestMvnnKuH0eo/TempSuite729723578038353576.fa
/tmp/adamTestMvnnKuH0eo/TempSuite729723578038353576.fa/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite729723578038353576.fa/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite729723578038353576.fa/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite729723578038353576.fa/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4884983398118459501
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/referenceName=1
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/referenceName=1/positionBin=14/part-00000-8a5126d7-4d6d-4e5b-9c40-a273a1742cda.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/referenceName=1/positionBin=14/.part-00000-8a5126d7-4d6d-4e5b-9c40-a273a1742cda.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/referenceName=1/positionBin=169/part-00001-8a5126d7-4d6d-4e5b-9c40-a273a1742cda.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/referenceName=1/positionBin=169/.part-00001-8a5126d7-4d6d-4e5b-9c40-a273a1742cda.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/referenceName=1/positionBin=240/.part-00002-8a5126d7-4d6d-4e5b-9c40-a273a1742cda.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/referenceName=1/positionBin=240/part-00002-8a5126d7-4d6d-4e5b-9c40-a273a1742cda.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/referenceName=1/positionBin=0/part-00000-8a5126d7-4d6d-4e5b-9c40-a273a1742cda.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/referenceName=1/positionBin=0/.part-00000-8a5126d7-4d6d-4e5b-9c40-a273a1742cda.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3511552875786960092.adam/_partitionedByStartPos
/tmp/adamTestMvnnKuH0eo/TempSuite488238387947945040
/tmp/adamTestMvnnKuH0eo/random.vcf649494636444764436.vcf
/tmp/adamTestMvnnKuH0eo/TempSuite5866917165840147924
/tmp/adamTestMvnnKuH0eo/TempSuite1837857546261814729
/tmp/adamTestMvnnKuH0eo/TempSuite5370960128663641549
/tmp/adamTestMvnnKuH0eo/TempSuite3510446467270453920.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3510446467270453920.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3510446467270453920.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3510446467270453920.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3510446467270453920.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3510446467270453920.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3510446467270453920.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3510446467270453920.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3510446467270453920.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3510446467270453920.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3510446467270453920.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3510446467270453920.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3510446467270453920.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3510446467270453920.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3510446467270453920.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1082284876115837451.bed
/tmp/adamTestMvnnKuH0eo/TempSuite1082284876115837451.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1082284876115837451.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1082284876115837451.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite1082284876115837451.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2233115177684084930.narrowPeak
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2233115177684084930.narrowPeak/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2233115177684084930.narrowPeak/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2233115177684084930.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2233115177684084930.narrowPeak/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2233115177684084930.narrowPeak/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2233115177684084930.narrowPeak/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2233115177684084930.narrowPeak/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2233115177684084930.narrowPeak/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2233115177684084930.narrowPeak/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2233115177684084930.narrowPeak/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7723454342955298819
/tmp/adamTestMvnnKuH0eo/bqsr16122977703494207051
/tmp/adamTestMvnnKuH0eo/bqsr16122977703494207051/bqsr1.bam
/tmp/adamTestMvnnKuH0eo/bqsr16122977703494207051/.bqsr1.bam.crc
/tmp/adamTestMvnnKuH0eo/trinity.fa686273577578684933.fa
/tmp/adamTestMvnnKuH0eo/5209115124894013487
/tmp/adamTestMvnnKuH0eo/5209115124894013487/sorted.lex.vcf
/tmp/adamTestMvnnKuH0eo/5209115124894013487/.sorted.lex.vcf.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1250279235374947702.bed
/tmp/adamTestMvnnKuH0eo/TempSuite1250279235374947702.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1250279235374947702.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1250279235374947702.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite1250279235374947702.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4140969051923294448.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4140969051923294448.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4140969051923294448.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4140969051923294448.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4140969051923294448.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4140969051923294448.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4140969051923294448.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4140969051923294448.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4140969051923294448.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4140969051923294448.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4140969051923294448.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4140969051923294448.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite4140969051923294448.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/2914537997580799051
/tmp/adamTestMvnnKuH0eo/2914537997580799051/coverage.adam
/tmp/adamTestMvnnKuH0eo/2914537997580799051/coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/2914537997580799051/coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/2914537997580799051/coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/2914537997580799051/coverage.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/2914537997580799051/coverage.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/2914537997580799051/coverage.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/2914537997580799051/coverage.adam/_metadata
/tmp/adamTestMvnnKuH0eo/2914537997580799051/coverage.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/2914537997580799051/coverage.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/2914537997580799051/coverage.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/2914537997580799051/coverage.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/2914537997580799051/coverage.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite488238387947945040.bed
/tmp/adamTestMvnnKuH0eo/TempSuite488238387947945040.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite488238387947945040.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite488238387947945040.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite488238387947945040.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3947085836274223694.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3947085836274223694.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3947085836274223694.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3947085836274223694.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3947085836274223694.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3947085836274223694.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3947085836274223694.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3947085836274223694.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3947085836274223694.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3947085836274223694.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3947085836274223694.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550
/tmp/adamTestMvnnKuH0eo/TempSuite5475886244146097187
/tmp/adamTestMvnnKuH0eo/7498238440246805212
/tmp/adamTestMvnnKuH0eo/7498238440246805212/artificial.cram
/tmp/adamTestMvnnKuH0eo/7498238440246805212/artificial.cram/part-r-00000.cram
/tmp/adamTestMvnnKuH0eo/7498238440246805212/artificial.cram/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/7498238440246805212/artificial.cram/_SUCCESS
/tmp/adamTestMvnnKuH0eo/7498238440246805212/artificial.cram/.part-r-00000.cram.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3770612837045600532
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2786663008729725738.narrowPeak
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2786663008729725738.narrowPeak/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2786663008729725738.narrowPeak/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2786663008729725738.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2786663008729725738.narrowPeak/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2786663008729725738.narrowPeak/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2786663008729725738.narrowPeak/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2786663008729725738.narrowPeak/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2786663008729725738.narrowPeak/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2786663008729725738.narrowPeak/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2786663008729725738.narrowPeak/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/5911768847286098672
/tmp/adamTestMvnnKuH0eo/5911768847286098672/genotypes.nested-annotations.adam
/tmp/adamTestMvnnKuH0eo/5911768847286098672/genotypes.nested-annotations.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/5911768847286098672/genotypes.nested-annotations.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/5911768847286098672/genotypes.nested-annotations.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/5911768847286098672/genotypes.nested-annotations.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/5911768847286098672/genotypes.nested-annotations.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/5911768847286098672/genotypes.nested-annotations.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/5911768847286098672/genotypes.nested-annotations.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/5911768847286098672/genotypes.nested-annotations.adam/_metadata
/tmp/adamTestMvnnKuH0eo/5911768847286098672/genotypes.nested-annotations.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/5911768847286098672/genotypes.nested-annotations.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/5911768847286098672/genotypes.nested-annotations.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/5911768847286098672/genotypes.nested-annotations.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/5911768847286098672/genotypes.nested-annotations.adam/_header
/tmp/adamTestMvnnKuH0eo/5911768847286098672/genotypes.nested-annotations.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5318629884011019053
/tmp/adamTestMvnnKuH0eo/.FeatureDatasetFunctionsSuite4871378389863279407.interval_list.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247
/tmp/adamTestMvnnKuH0eo/TempSuite2072524861807849275.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2072524861807849275.adam/part-00000-61ef5442-e3e9-43af-89b5-5f0c0285e45f-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2072524861807849275.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2072524861807849275.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2072524861807849275.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2072524861807849275.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2072524861807849275.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2072524861807849275.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2072524861807849275.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2072524861807849275.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite2072524861807849275.adam/.part-00000-61ef5442-e3e9-43af-89b5-5f0c0285e45f-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6501985171437039933.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6501985171437039933.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6501985171437039933.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6501985171437039933.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6501985171437039933.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6501985171437039933.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6501985171437039933.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6501985171437039933.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6501985171437039933.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6501985171437039933.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6501985171437039933.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6501985171437039933.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6501985171437039933.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6501985171437039933.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6501985171437039933.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4636224177888108645
/tmp/adamTestMvnnKuH0eo/reads1228920247957610950
/tmp/adamTestMvnnKuH0eo/reads1228920247957610950/reads2.fq
/tmp/adamTestMvnnKuH0eo/reads1228920247957610950/reads2.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/reads1228920247957610950/reads2.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/reads1228920247957610950/reads2.fq/part-00000
/tmp/adamTestMvnnKuH0eo/reads1228920247957610950/reads2.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/reads1228920247957610950/reads1.fq
/tmp/adamTestMvnnKuH0eo/reads1228920247957610950/reads1.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/reads1228920247957610950/reads1.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/reads1228920247957610950/reads1.fq/part-00000
/tmp/adamTestMvnnKuH0eo/reads1228920247957610950/reads1.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/.TempSuite1293287432599027713.fq.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4066309729580549681
/tmp/adamTestMvnnKuH0eo/TempSuite8318085388922892968
/tmp/adamTestMvnnKuH0eo/TempSuite551768914693007743
/tmp/adamTestMvnnKuH0eo/random.vcf6592730346043367686.vcf
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5797507120617460866.bed
/tmp/adamTestMvnnKuH0eo/hg19.chrM.2bit4888333238698767896.chrM.2bit
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3884467390864553360
/tmp/adamTestMvnnKuH0eo/4005498672548337425
/tmp/adamTestMvnnKuH0eo/4005498672548337425/tag.sam
/tmp/adamTestMvnnKuH0eo/4005498672548337425/.tag.sam.crc
/tmp/adamTestMvnnKuH0eo/2269266374329397603
/tmp/adamTestMvnnKuH0eo/2269266374329397603/predicate.1.adam
/tmp/adamTestMvnnKuH0eo/2269266374329397603/predicate.1.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/2269266374329397603/predicate.1.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/2269266374329397603/predicate.1.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/2269266374329397603/predicate.1.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/2269266374329397603/predicate.1.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/2269266374329397603/predicate.1.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/2269266374329397603/predicate.1.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/2269266374329397603/predicate.1.adam/_metadata
/tmp/adamTestMvnnKuH0eo/2269266374329397603/predicate.1.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/2269266374329397603/predicate.1.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/2269266374329397603/predicate.1.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/2269266374329397603/predicate.1.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/2269266374329397603/predicate.1.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/2269266374329397603/predicate.1.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2245431758329828535
/tmp/adamTestMvnnKuH0eo/TempSuite7245514333955322733.bam
/tmp/adamTestMvnnKuH0eo/TempSuite7245514333955322733.bam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7245514333955322733.bam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7245514333955322733.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7245514333955322733.bam/part-r-00000.bam
/tmp/adamTestMvnnKuH0eo/TempSuite4784956552828462041
/tmp/adamTestMvnnKuH0eo/TempSuite5205672201322075644.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5205672201322075644.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5205672201322075644.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5205672201322075644.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5205672201322075644.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5205672201322075644.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5205672201322075644.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5205672201322075644.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5205672201322075644.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5205672201322075644.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5205672201322075644.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5205672201322075644.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5205672201322075644.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5205672201322075644.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5205672201322075644.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1932050877339872991
/tmp/adamTestMvnnKuH0eo/TempSuite300942143338037594
/tmp/adamTestMvnnKuH0eo/bqsr18364629589021174717
/tmp/adamTestMvnnKuH0eo/bqsr18364629589021174717/.bqsr1.sam.crc
/tmp/adamTestMvnnKuH0eo/bqsr18364629589021174717/bqsr1.sam
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3351482255256938598
/tmp/adamTestMvnnKuH0eo/TempSuite955423488653943502_1.fq
/tmp/adamTestMvnnKuH0eo/TempSuite753682164985623414
/tmp/adamTestMvnnKuH0eo/1603159666801-0
/tmp/adamTestMvnnKuH0eo/1603159666801-0/.test.gvcf.vcf.crc
/tmp/adamTestMvnnKuH0eo/1603159666801-0/test.gvcf.vcf
/tmp/adamTestMvnnKuH0eo/TempSuite7828636206890644376
/tmp/adamTestMvnnKuH0eo/.SliceDatasetSuite1450388302068087572.fasta.crc
/tmp/adamTestMvnnKuH0eo/TempSuite464542054053959516
/tmp/adamTestMvnnKuH0eo/TempSuite9094827837474744352.adam
/tmp/adamTestMvnnKuH0eo/TempSuite9094827837474744352.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9094827837474744352.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite9094827837474744352.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite9094827837474744352.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite9094827837474744352.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9094827837474744352.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9094827837474744352.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9094827837474744352.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9094827837474744352.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite9094827837474744352.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9094827837474744352.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite9094827837474744352.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9094827837474744352.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite9094827837474744352.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite9094827837474744352.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite9094827837474744352.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1922007312168517755.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1922007312168517755.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1922007312168517755.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1922007312168517755.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1922007312168517755.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1922007312168517755.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1922007312168517755.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1922007312168517755.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1922007312168517755.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1922007312168517755.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1922007312168517755.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1922007312168517755.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1922007312168517755.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1922007312168517755.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1922007312168517755.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1922007312168517755.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1922007312168517755.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/unordered.sam5543272755740337042.sam
/tmp/adamTestMvnnKuH0eo/TempSuite464542054053959516.bed
/tmp/adamTestMvnnKuH0eo/TempSuite464542054053959516.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite464542054053959516.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite464542054053959516.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite464542054053959516.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6154120957118730055.bed
/tmp/adamTestMvnnKuH0eo/TempSuite6154120957118730055.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6154120957118730055.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6154120957118730055.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite6154120957118730055.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite961031981628660234
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite4942869530126832240.adam
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite4942869530126832240.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite4942869530126832240.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite4942869530126832240.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite4942869530126832240.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite4942869530126832240.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite4942869530126832240.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite4942869530126832240.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite4942869530126832240.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite4942869530126832240.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite4942869530126832240.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite4942869530126832240.adam/_metadata
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite4942869530126832240.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite4942869530126832240.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite4942869530126832240.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite4942869530126832240.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite4942869530126832240.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4344762558635298126.gtf
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4344762558635298126.gtf/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4344762558635298126.gtf/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4344762558635298126.gtf/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4344762558635298126.gtf/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4344762558635298126.gtf/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4344762558635298126.gtf/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4344762558635298126.gtf/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4344762558635298126.gtf/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4344762558635298126.gtf/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4344762558635298126.gtf/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6917431599004709834.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6917431599004709834.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6917431599004709834.adam/part-00000-7acc2e37-64e9-400a-bb5a-568ebc5595f3-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6917431599004709834.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6917431599004709834.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6917431599004709834.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6917431599004709834.adam/.part-00000-7acc2e37-64e9-400a-bb5a-568ebc5595f3-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6917431599004709834.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6917431599004709834.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6917431599004709834.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6917431599004709834.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2292229675524576276
/tmp/adamTestMvnnKuH0eo/TempSuite3640022557873358346
/tmp/adamTestMvnnKuH0eo/TempSuite5100154103143562646.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5100154103143562646.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5100154103143562646.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5100154103143562646.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5100154103143562646.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5100154103143562646.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5100154103143562646.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5100154103143562646.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5100154103143562646.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5100154103143562646.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5100154103143562646.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5100154103143562646.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite5100154103143562646.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3965450555697370308
/tmp/adamTestMvnnKuH0eo/TempSuite329094831285933162
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4816307917735021561.adam
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4816307917735021561.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4816307917735021561.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4816307917735021561.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4816307917735021561.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4816307917735021561.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4816307917735021561.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4816307917735021561.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4816307917735021561.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4816307917735021561.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4816307917735021561.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4816307917735021561.adam/_metadata
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4816307917735021561.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4816307917735021561.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4816307917735021561.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4816307917735021561.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4816307917735021561.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1247145733372448307
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5254687674082430222
/tmp/adamTestMvnnKuH0eo/TempSuite9094827837474744352
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711
/tmp/adamTestMvnnKuH0eo/TempSuite3640022557873358346.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3640022557873358346.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3640022557873358346.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3640022557873358346.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3640022557873358346.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3640022557873358346.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3640022557873358346.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3640022557873358346.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3640022557873358346.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3640022557873358346.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3640022557873358346.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3640022557873358346.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite3640022557873358346.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3813979025285510215.sam
/tmp/adamTestMvnnKuH0eo/TempSuite7289872161589331255.bed
/tmp/adamTestMvnnKuH0eo/TempSuite7289872161589331255.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7289872161589331255.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7289872161589331255.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite7289872161589331255.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4322310148418758152.gtf
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4322310148418758152.gtf/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4322310148418758152.gtf/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4322310148418758152.gtf/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4322310148418758152.gtf/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4322310148418758152.gtf/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4322310148418758152.gtf/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4322310148418758152.gtf/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4322310148418758152.gtf/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4322310148418758152.gtf/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4322310148418758152.gtf/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7003352720723213323
/tmp/adamTestMvnnKuH0eo/TempSuite4276152055242333153.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4276152055242333153.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4276152055242333153.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4276152055242333153.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4276152055242333153.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4276152055242333153.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4276152055242333153.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4276152055242333153.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4276152055242333153.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4276152055242333153.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4276152055242333153.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4276152055242333153.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4276152055242333153.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4276152055242333153.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4276152055242333153.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5300979982075949533
/tmp/adamTestMvnnKuH0eo/TempSuite9025693138856149923.sam
/tmp/adamTestMvnnKuH0eo/TempSuite9025693138856149923.sam/part-r-00000.sam
/tmp/adamTestMvnnKuH0eo/TempSuite9025693138856149923.sam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9025693138856149923.sam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite9025693138856149923.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnnKuH0eo/unordered.sam4864250101515678147.sam
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite1130570365911689711.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6190491037350959459.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6190491037350959459.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6190491037350959459.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6190491037350959459.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6190491037350959459.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6190491037350959459.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6190491037350959459.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6190491037350959459.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6190491037350959459.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6190491037350959459.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6190491037350959459.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6190491037350959459.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6190491037350959459.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6190491037350959459.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6190491037350959459.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/6595064164358866122
/tmp/adamTestMvnnKuH0eo/6595064164358866122/unordered.sam
/tmp/adamTestMvnnKuH0eo/6595064164358866122/.unordered.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6190491037350959459
/tmp/adamTestMvnnKuH0eo/TempSuite4784956552828462041_1.fq
/tmp/adamTestMvnnKuH0eo/TempSuite4784956552828462041_1.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4784956552828462041_1.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4784956552828462041_1.fq/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite4784956552828462041_1.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/artificial.sam815741086639713932.sam
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7458971555749195778.gff3
/tmp/adamTestMvnnKuH0eo/reads124075594968592371957
/tmp/adamTestMvnnKuH0eo/reads124075594968592371957/reads12.sam
/tmp/adamTestMvnnKuH0eo/reads124075594968592371957/reads12.sam/part-r-00000.sam
/tmp/adamTestMvnnKuH0eo/reads124075594968592371957/reads12.sam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/reads124075594968592371957/reads12.sam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/reads124075594968592371957/reads12.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnnKuH0eo/.FeatureDatasetFunctionsSuite7420324932538886494.narrowPeak.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6884182617913683219.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6884182617913683219.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6884182617913683219.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6884182617913683219.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6884182617913683219.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6884182617913683219.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6884182617913683219.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6884182617913683219.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6884182617913683219.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6884182617913683219.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6884182617913683219.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6884182617913683219.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6884182617913683219.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6884182617913683219.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6884182617913683219.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6884182617913683219.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6884182617913683219.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6884182617913683219.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6884182617913683219.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8697433579578687187
/tmp/adamTestMvnnKuH0eo/TempSuite3427362733611526316.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3427362733611526316.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3427362733611526316.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3427362733611526316.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3427362733611526316.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3427362733611526316.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3427362733611526316.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3427362733611526316.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3427362733611526316.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3427362733611526316.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3427362733611526316.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3427362733611526316.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3427362733611526316.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3427362733611526316.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3427362733611526316.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4265634291392043786.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4265634291392043786.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4265634291392043786.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4265634291392043786.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4265634291392043786.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4265634291392043786.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4265634291392043786.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4265634291392043786.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4265634291392043786.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4265634291392043786.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4265634291392043786.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4265634291392043786.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite4265634291392043786.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8325180154904737388
/tmp/adamTestMvnnKuH0eo/ordered.sam9080879555677560806.sam
/tmp/adamTestMvnnKuH0eo/bqsr12371683134907899854
/tmp/adamTestMvnnKuH0eo/bqsr12371683134907899854/bqsr1.bam
/tmp/adamTestMvnnKuH0eo/bqsr12371683134907899854/.bqsr1.bam.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5698741038706618250.bed
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5698741038706618250.bed/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5698741038706618250.bed/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5698741038706618250.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5698741038706618250.bed/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5698741038706618250.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5698741038706618250.bed/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5698741038706618250.bed/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5698741038706618250.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5698741038706618250.bed/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5698741038706618250.bed/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1763313213517507281
/tmp/adamTestMvnnKuH0eo/javaAC5023565646876484855
/tmp/adamTestMvnnKuH0eo/javaAC5023565646876484855/testRdd.fragment.adam
/tmp/adamTestMvnnKuH0eo/javaAC5023565646876484855/testRdd.fragment.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC5023565646876484855/testRdd.fragment.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/javaAC5023565646876484855/testRdd.fragment.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC5023565646876484855/testRdd.fragment.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/javaAC5023565646876484855/testRdd.fragment.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC5023565646876484855/testRdd.fragment.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC5023565646876484855/testRdd.fragment.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/javaAC5023565646876484855/testRdd.fragment.adam/_metadata
/tmp/adamTestMvnnKuH0eo/javaAC5023565646876484855/testRdd.fragment.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC5023565646876484855/testRdd.fragment.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/javaAC5023565646876484855/testRdd.fragment.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/javaAC5023565646876484855/testRdd.fragment.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/javaAC5023565646876484855/testRdd.fragment.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/javaAC5023565646876484855/testRdd.fragment.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite6851115267005978225.fasta
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite6851115267005978225.fasta/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite6851115267005978225.fasta/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite6851115267005978225.fasta/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite6851115267005978225.fasta/part-00003
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite6851115267005978225.fasta/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite6851115267005978225.fasta/part-00000
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite6851115267005978225.fasta/part-00002
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite6851115267005978225.fasta/_SUCCESS
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite6851115267005978225.fasta/part-00001
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite6851115267005978225.fasta/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098
/tmp/adamTestMvnnKuH0eo/TempSuite2994344869608914568
/tmp/adamTestMvnnKuH0eo/TempSuite2725533813379114136.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2725533813379114136.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2725533813379114136.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2725533813379114136.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2725533813379114136.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2725533813379114136.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2725533813379114136.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2725533813379114136.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2725533813379114136.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2725533813379114136.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2725533813379114136.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2725533813379114136.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2725533813379114136.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2725533813379114136.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2725533813379114136.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/1603160362856-0
/tmp/adamTestMvnnKuH0eo/1603160362856-0/bqsr1-r2.fq
/tmp/adamTestMvnnKuH0eo/1603160362856-0/bqsr1-r2.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/1603160362856-0/bqsr1-r2.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/1603160362856-0/bqsr1-r2.fq/part-00000
/tmp/adamTestMvnnKuH0eo/1603160362856-0/bqsr1-r2.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/1603160362856-0/bqsr1-r1.fq
/tmp/adamTestMvnnKuH0eo/1603160362856-0/bqsr1-r1.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/1603160362856-0/bqsr1-r1.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/1603160362856-0/bqsr1-r1.fq/part-00000
/tmp/adamTestMvnnKuH0eo/1603160362856-0/bqsr1-r1.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2943824612505746540
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite5203317371450743133
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite197002033046013733.gff3
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite197002033046013733.gff3/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite197002033046013733.gff3/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite197002033046013733.gff3/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite197002033046013733.gff3/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite197002033046013733.gff3/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite197002033046013733.gff3/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite197002033046013733.gff3/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite197002033046013733.gff3/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite197002033046013733.gff3/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite197002033046013733.gff3/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4938618116360932418
/tmp/adamTestMvnnKuH0eo/TempSuite7863201161729774802.adam
/tmp/adamTestMvnnKuH0eo/TempSuite7863201161729774802.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7863201161729774802.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7863201161729774802.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7863201161729774802.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7863201161729774802.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7863201161729774802.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7863201161729774802.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7863201161729774802.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7863201161729774802.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7863201161729774802.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7863201161729774802.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7863201161729774802.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7863201161729774802.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7863201161729774802.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/ordered.sam2993730464037527708.sam
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1288445259864574712
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite6467424259481691166.fastq
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam/part-r-00004.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam/.part-r-00004.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6620987861530663752
/tmp/adamTestMvnnKuH0eo/TempSuite2898760669345390967
/tmp/adamTestMvnnKuH0eo/TempSuite568754959737747421
/tmp/adamTestMvnnKuH0eo/TempSuite3231490026798809759.bed
/tmp/adamTestMvnnKuH0eo/TempSuite3231490026798809759.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3231490026798809759.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3231490026798809759.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite3231490026798809759.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite9125970328764738159
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5780765073240443096
/tmp/adamTestMvnnKuH0eo/small.vcf7199596246141753775.vcf
/tmp/adamTestMvnnKuH0eo/ordered.sam8009328379967652887.sam
/tmp/adamTestMvnnKuH0eo/TempSuite8022897495612916063.adam
/tmp/adamTestMvnnKuH0eo/TempSuite8022897495612916063.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8022897495612916063.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8022897495612916063.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8022897495612916063.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8022897495612916063.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8022897495612916063.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8022897495612916063.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8022897495612916063.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8022897495612916063.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8022897495612916063.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8022897495612916063.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8022897495612916063.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8022897495612916063.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8022897495612916063.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8022897495612916063.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8022897495612916063.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8022897495612916063.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8022897495612916063.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/4632947153539455265
/tmp/adamTestMvnnKuH0eo/4632947153539455265/.unordered.bam.crc
/tmp/adamTestMvnnKuH0eo/4632947153539455265/unordered.bam
/tmp/adamTestMvnnKuH0eo/TempSuite5083371713315555804
/tmp/adamTestMvnnKuH0eo/javaAC5706277570396887301
/tmp/adamTestMvnnKuH0eo/javaAC5706277570396887301/testRdd.feature.adam
/tmp/adamTestMvnnKuH0eo/javaAC5706277570396887301/testRdd.feature.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC5706277570396887301/testRdd.feature.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC5706277570396887301/testRdd.feature.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC5706277570396887301/testRdd.feature.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC5706277570396887301/testRdd.feature.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/javaAC5706277570396887301/testRdd.feature.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC5706277570396887301/testRdd.feature.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/javaAC5706277570396887301/testRdd.feature.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC5706277570396887301/testRdd.feature.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/javaAC5706277570396887301/testRdd.feature.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC5706277570396887301/testRdd.feature.adam/_metadata
/tmp/adamTestMvnnKuH0eo/javaAC5706277570396887301/testRdd.feature.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC5706277570396887301/testRdd.feature.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/javaAC5706277570396887301/testRdd.feature.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/javaAC5706277570396887301/testRdd.feature.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC5706277570396887301/testRdd.feature.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/javaAC5706277570396887301/testRdd.feature.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC5706277570396887301/testRdd.feature.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/944521892042850933
/tmp/adamTestMvnnKuH0eo/944521892042850933/.artificial.cram.crc
/tmp/adamTestMvnnKuH0eo/944521892042850933/artificial.cram
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam/referenceName=13
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam/referenceName=13/positionBin=0/.part-00000-573123b1-2e3f-4a08-9cbb-4739727bd38c.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam/referenceName=13/positionBin=0/part-00000-573123b1-2e3f-4a08-9cbb-4739727bd38c.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam/referenceName=2
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam/referenceName=2/positionBin=0/.part-00000-573123b1-2e3f-4a08-9cbb-4739727bd38c.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam/referenceName=2/positionBin=0/part-00000-573123b1-2e3f-4a08-9cbb-4739727bd38c.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam/referenceName=1
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam/referenceName=1/positionBin=0/.part-00000-573123b1-2e3f-4a08-9cbb-4739727bd38c.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam/referenceName=1/positionBin=0/part-00000-573123b1-2e3f-4a08-9cbb-4739727bd38c.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534.adam/_partitionedByStartPos
/tmp/adamTestMvnnKuH0eo/TempSuite886322044938792652.sam
/tmp/adamTestMvnnKuH0eo/TempSuite373922380580266139.bed
/tmp/adamTestMvnnKuH0eo/TempSuite373922380580266139.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite373922380580266139.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite373922380580266139.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite373922380580266139.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6000420507374627883
/tmp/adamTestMvnnKuH0eo/TempSuite3490770450624866342_2.fq
/tmp/adamTestMvnnKuH0eo/TempSuite3490770450624866342_2.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3490770450624866342_2.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3490770450624866342_2.fq/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite3490770450624866342_2.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite9012254506733325292.adam
/tmp/adamTestMvnnKuH0eo/TempSuite9012254506733325292.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite9012254506733325292.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9012254506733325292.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9012254506733325292.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9012254506733325292.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9012254506733325292.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9012254506733325292.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite9012254506733325292.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite9012254506733325292.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9012254506733325292.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite9012254506733325292.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite9012254506733325292.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite9012254506733325292.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite9012254506733325292.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3378562552057308688.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3378562552057308688.adam/.part-00000-081e2d31-eaf0-46dc-b94d-c8e4ba94987a-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3378562552057308688.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3378562552057308688.adam/.part-00002-081e2d31-eaf0-46dc-b94d-c8e4ba94987a-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3378562552057308688.adam/.part-00001-081e2d31-eaf0-46dc-b94d-c8e4ba94987a-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3378562552057308688.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3378562552057308688.adam/part-00001-081e2d31-eaf0-46dc-b94d-c8e4ba94987a-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3378562552057308688.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3378562552057308688.adam/part-00000-081e2d31-eaf0-46dc-b94d-c8e4ba94987a-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3378562552057308688.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3378562552057308688.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3378562552057308688.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3378562552057308688.adam/part-00002-081e2d31-eaf0-46dc-b94d-c8e4ba94987a-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/790492126406335862
/tmp/adamTestMvnnKuH0eo/790492126406335862/.ordered.sam.crc
/tmp/adamTestMvnnKuH0eo/790492126406335862/ordered.sam
/tmp/adamTestMvnnKuH0eo/TempSuite1442268602598459252.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1442268602598459252.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1442268602598459252.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1442268602598459252.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1442268602598459252.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1442268602598459252.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1442268602598459252.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1442268602598459252.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1442268602598459252.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1442268602598459252.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1442268602598459252.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1442268602598459252.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1442268602598459252.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1442268602598459252.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite1442268602598459252.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6637540438875381705.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6637540438875381705.adam/.part-00000-efa58d6c-3b39-4bae-8957-be4dbf0e5370-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6637540438875381705.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6637540438875381705.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6637540438875381705.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6637540438875381705.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6637540438875381705.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6637540438875381705.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6637540438875381705.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6637540438875381705.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6637540438875381705.adam/part-00000-efa58d6c-3b39-4bae-8957-be4dbf0e5370-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/.FeatureDatasetFunctionsSuite5925624700008039829.gtf.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4462946966199699598
/tmp/adamTestMvnnKuH0eo/TempSuite4185296540468608988
/tmp/adamTestMvnnKuH0eo/.FeatureDatasetFunctionsSuite7458971555749195778.gff3.crc
/tmp/adamTestMvnnKuH0eo/unordered.sam6181103730835527962.sam
/tmp/adamTestMvnnKuH0eo/TempSuite1202435914540179808.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1202435914540179808.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1202435914540179808.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1202435914540179808.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1202435914540179808.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1202435914540179808.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1202435914540179808.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1202435914540179808.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1202435914540179808.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1202435914540179808.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1202435914540179808.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1202435914540179808.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1202435914540179808.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1202435914540179808.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1202435914540179808.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/3782518102206924635
/tmp/adamTestMvnnKuH0eo/TempSuite5804005713312615004.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5804005713312615004.adam/.part-00000-a7af2026-9081-4550-b0d3-c0ad34b2d5fa-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5804005713312615004.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5804005713312615004.adam/part-00000-a7af2026-9081-4550-b0d3-c0ad34b2d5fa-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5804005713312615004.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5804005713312615004.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5804005713312615004.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5804005713312615004.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5804005713312615004.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5804005713312615004.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5804005713312615004.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8255607497645361833.bed
/tmp/adamTestMvnnKuH0eo/TempSuite8255607497645361833.bed/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8255607497645361833.bed/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8255607497645361833.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8255607497645361833.bed/part-00003
/tmp/adamTestMvnnKuH0eo/TempSuite8255607497645361833.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8255607497645361833.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite8255607497645361833.bed/part-00002
/tmp/adamTestMvnnKuH0eo/TempSuite8255607497645361833.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8255607497645361833.bed/part-00001
/tmp/adamTestMvnnKuH0eo/TempSuite8255607497645361833.bed/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7874536840943684671
/tmp/adamTestMvnnKuH0eo/TempSuite3418163045801415341
/tmp/adamTestMvnnKuH0eo/javaAC2887569032818207597
/tmp/adamTestMvnnKuH0eo/javaAC2887569032818207597/testRdd.coverage.adam
/tmp/adamTestMvnnKuH0eo/javaAC2887569032818207597/testRdd.coverage.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC2887569032818207597/testRdd.coverage.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC2887569032818207597/testRdd.coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC2887569032818207597/testRdd.coverage.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC2887569032818207597/testRdd.coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/javaAC2887569032818207597/testRdd.coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC2887569032818207597/testRdd.coverage.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/javaAC2887569032818207597/testRdd.coverage.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC2887569032818207597/testRdd.coverage.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/javaAC2887569032818207597/testRdd.coverage.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC2887569032818207597/testRdd.coverage.adam/_metadata
/tmp/adamTestMvnnKuH0eo/javaAC2887569032818207597/testRdd.coverage.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC2887569032818207597/testRdd.coverage.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/javaAC2887569032818207597/testRdd.coverage.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/javaAC2887569032818207597/testRdd.coverage.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC2887569032818207597/testRdd.coverage.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/javaAC2887569032818207597/testRdd.coverage.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC2887569032818207597/testRdd.coverage.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1888342128908895561.bam
/tmp/adamTestMvnnKuH0eo/TempSuite1699575343340734957.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1699575343340734957.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1699575343340734957.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1699575343340734957.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1699575343340734957.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1699575343340734957.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1699575343340734957.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1699575343340734957.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1699575343340734957.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1699575343340734957.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1699575343340734957.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8294089334239126222.adam
/tmp/adamTestMvnnKuH0eo/TempSuite8294089334239126222.adam/.part-00002-cb3901c3-e5c0-401c-99e8-1b7e6ac4b3df-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8294089334239126222.adam/part-00002-cb3901c3-e5c0-401c-99e8-1b7e6ac4b3df-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8294089334239126222.adam/part-00001-cb3901c3-e5c0-401c-99e8-1b7e6ac4b3df-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8294089334239126222.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8294089334239126222.adam/part-00000-cb3901c3-e5c0-401c-99e8-1b7e6ac4b3df-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8294089334239126222.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8294089334239126222.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8294089334239126222.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8294089334239126222.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8294089334239126222.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite8294089334239126222.adam/.part-00000-cb3901c3-e5c0-401c-99e8-1b7e6ac4b3df-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8294089334239126222.adam/.part-00001-cb3901c3-e5c0-401c-99e8-1b7e6ac4b3df-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5949342764702190503.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5949342764702190503.adam/part-00000-e596be23-2f52-4a0a-a7e0-a28dd6ff549b-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5949342764702190503.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5949342764702190503.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5949342764702190503.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5949342764702190503.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5949342764702190503.adam/.part-00000-e596be23-2f52-4a0a-a7e0-a28dd6ff549b-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5949342764702190503.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5949342764702190503.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5949342764702190503.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5949342764702190503.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite8153420896677519097.adam
/tmp/adamTestMvnnKuH0eo/TempSuite8153420896677519097.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8153420896677519097.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8153420896677519097.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8153420896677519097.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8153420896677519097.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8153420896677519097.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8153420896677519097.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8153420896677519097.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8153420896677519097.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8153420896677519097.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3884467390864553360.gtf
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2786663008729725738
/tmp/adamTestMvnnKuH0eo/TempSuite871769442135603914.adam
/tmp/adamTestMvnnKuH0eo/TempSuite871769442135603914.adam/.part-00000-cd7c09b3-04ed-4834-8f32-5dde601f0082-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite871769442135603914.adam/part-00000-cd7c09b3-04ed-4834-8f32-5dde601f0082-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite871769442135603914.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite871769442135603914.adam/.part-00001-cd7c09b3-04ed-4834-8f32-5dde601f0082-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite871769442135603914.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite871769442135603914.adam/.part-00002-cd7c09b3-04ed-4834-8f32-5dde601f0082-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite871769442135603914.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite871769442135603914.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite871769442135603914.adam/part-00002-cd7c09b3-04ed-4834-8f32-5dde601f0082-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite871769442135603914.adam/part-00001-cd7c09b3-04ed-4834-8f32-5dde601f0082-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355
/tmp/adamTestMvnnKuH0eo/TempSuite4912605329340203890
/tmp/adamTestMvnnKuH0eo/TempSuite8731085637387038122.adam
/tmp/adamTestMvnnKuH0eo/TempSuite8731085637387038122.adam/part-00000-270eba7e-75cb-4857-a559-e894233230e0-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8731085637387038122.adam/.part-00000-270eba7e-75cb-4857-a559-e894233230e0-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8731085637387038122.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8731085637387038122.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8731085637387038122.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8731085637387038122.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8731085637387038122.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8731085637387038122.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2233115177684084930
/tmp/adamTestMvnnKuH0eo/TempSuite7591898459838149322
/tmp/adamTestMvnnKuH0eo/3510369949719362432
/tmp/adamTestMvnnKuH0eo/3510369949719362432/unordered.adam
/tmp/adamTestMvnnKuH0eo/3510369949719362432/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/3510369949719362432/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/3510369949719362432/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/3510369949719362432/unordered.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/3510369949719362432/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/3510369949719362432/unordered.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/3510369949719362432/unordered.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/3510369949719362432/unordered.adam/_metadata
/tmp/adamTestMvnnKuH0eo/3510369949719362432/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/3510369949719362432/unordered.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/3510369949719362432/unordered.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/3510369949719362432/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/3510369949719362432/unordered.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/3510369949719362432/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5305071538164362261.gtf
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5305071538164362261.gtf/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5305071538164362261.gtf/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5305071538164362261.gtf/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5305071538164362261.gtf/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5305071538164362261.gtf/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5305071538164362261.gtf/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5305071538164362261.gtf/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5305071538164362261.gtf/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5305071538164362261.gtf/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5305071538164362261.gtf/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/.FeatureDatasetFunctionsSuite349157456023705499.gff3.crc
/tmp/adamTestMvnnKuH0eo/artificial.cram2404583684617656599.cram
/tmp/adamTestMvnnKuH0eo/TempSuite4658786333156670285
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1288445259864574712.bed
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite6242260054760183211
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/_partitionMap.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/._partitionMap.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8136489188654606247.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite729723578038353576
/tmp/adamTestMvnnKuH0eo/TempSuite5744721922079427085
/tmp/adamTestMvnnKuH0eo/TempSuite1247145733372448307.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1247145733372448307.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1247145733372448307.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1247145733372448307.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1247145733372448307.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1247145733372448307.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1247145733372448307.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1247145733372448307.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1247145733372448307.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1247145733372448307.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1247145733372448307.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite90980956498523966.sam
/tmp/adamTestMvnnKuH0eo/TempSuite90980956498523966.sam/part-r-00000.sam
/tmp/adamTestMvnnKuH0eo/TempSuite90980956498523966.sam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite90980956498523966.sam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite90980956498523966.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8202384502615800497.fa
/tmp/adamTestMvnnKuH0eo/TempSuite8202384502615800497.fa/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8202384502615800497.fa/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8202384502615800497.fa/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite8202384502615800497.fa/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite361031587486091194
/tmp/adamTestMvnnKuH0eo/4064175691556610806
/tmp/adamTestMvnnKuH0eo/4064175691556610806/binned.adam
/tmp/adamTestMvnnKuH0eo/4064175691556610806/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/4064175691556610806/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/4064175691556610806/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/4064175691556610806/binned.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/4064175691556610806/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/4064175691556610806/binned.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/4064175691556610806/binned.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/4064175691556610806/binned.adam/_metadata
/tmp/adamTestMvnnKuH0eo/4064175691556610806/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/4064175691556610806/binned.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/4064175691556610806/binned.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/4064175691556610806/binned.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/4064175691556610806/binned.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/4064175691556610806/binned.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4696685352126220644
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8747905173167602984
/tmp/adamTestMvnnKuH0eo/TempSuite2818798367700325147
/tmp/adamTestMvnnKuH0eo/unordered.sam6946841241456280676.sam
/tmp/adamTestMvnnKuH0eo/unordered.sam6054431973583816938.sam
/tmp/adamTestMvnnKuH0eo/random.vcf8548357976041443347.vcf
/tmp/adamTestMvnnKuH0eo/random.vcf2940370391386926030.vcf
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5358140846595731447.bed
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5358140846595731447.bed/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5358140846595731447.bed/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5358140846595731447.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5358140846595731447.bed/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5358140846595731447.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5358140846595731447.bed/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5358140846595731447.bed/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5358140846595731447.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5358140846595731447.bed/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5358140846595731447.bed/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3662695019094299909reads12.sam
/tmp/adamTestMvnnKuH0eo/TempSuite563715411477372219
/tmp/adamTestMvnnKuH0eo/javaAC5146165841036158538
/tmp/adamTestMvnnKuH0eo/javaAC5146165841036158538/testRdd.fragment.adam
/tmp/adamTestMvnnKuH0eo/javaAC5146165841036158538/testRdd.fragment.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC5146165841036158538/testRdd.fragment.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/javaAC5146165841036158538/testRdd.fragment.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC5146165841036158538/testRdd.fragment.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/javaAC5146165841036158538/testRdd.fragment.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC5146165841036158538/testRdd.fragment.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC5146165841036158538/testRdd.fragment.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/javaAC5146165841036158538/testRdd.fragment.adam/_metadata
/tmp/adamTestMvnnKuH0eo/javaAC5146165841036158538/testRdd.fragment.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC5146165841036158538/testRdd.fragment.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/javaAC5146165841036158538/testRdd.fragment.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/javaAC5146165841036158538/testRdd.fragment.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/javaAC5146165841036158538/testRdd.fragment.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/javaAC5146165841036158538/testRdd.fragment.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite9167136985606598693
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite524298360604425955.adam
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite524298360604425955.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite524298360604425955.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite524298360604425955.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite524298360604425955.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite524298360604425955.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite524298360604425955.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite524298360604425955.adam/_metadata
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite524298360604425955.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite524298360604425955.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite524298360604425955.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite524298360604425955.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/adam-cli.TransformFeaturesSuite524298360604425955.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4783365113463169476
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761
/tmp/adamTestMvnnKuH0eo/TempSuite925286910754185191.adam
/tmp/adamTestMvnnKuH0eo/TempSuite925286910754185191.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite925286910754185191.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite925286910754185191.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite925286910754185191.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite925286910754185191.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite925286910754185191.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite925286910754185191.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite925286910754185191.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite925286910754185191.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite925286910754185191.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite925286910754185191.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite925286910754185191.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite925286910754185191.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite925286910754185191.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite925286910754185191.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite925286910754185191.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite925286910754185191.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite925286910754185191.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1250279235374947702
/tmp/adamTestMvnnKuH0eo/TempSuite90980956498523966
/tmp/adamTestMvnnKuH0eo/TempSuite1267367136362189114.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1267367136362189114.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1267367136362189114.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1267367136362189114.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1267367136362189114.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1267367136362189114.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1267367136362189114.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1267367136362189114.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1267367136362189114.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1267367136362189114.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1267367136362189114.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1267367136362189114.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite1267367136362189114.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite6043284895554192087
/tmp/adamTestMvnnKuH0eo/TempSuite917235282161821194.adam
/tmp/adamTestMvnnKuH0eo/TempSuite917235282161821194.adam/.part-00000-03c147b6-f86a-437c-9257-15e18979c88e-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite917235282161821194.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite917235282161821194.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite917235282161821194.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite917235282161821194.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite917235282161821194.adam/part-00000-03c147b6-f86a-437c-9257-15e18979c88e-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite917235282161821194.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite917235282161821194.adam/_header
/tmp/adamTestMvnnKuH0eo/.FeatureDatasetFunctionsSuite433608220316962279.bed.crc
/tmp/adamTestMvnnKuH0eo/ordered.sam4439364229491924601.sam
/tmp/adamTestMvnnKuH0eo/TempSuite2119932326441993904.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2119932326441993904.adam/.part-00000-80685f99-b1bb-4456-ada1-a772010a187a-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2119932326441993904.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2119932326441993904.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2119932326441993904.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2119932326441993904.adam/part-00000-80685f99-b1bb-4456-ada1-a772010a187a-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2119932326441993904.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2119932326441993904.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2119932326441993904.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2119932326441993904.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2119932326441993904.adam/_header
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite361031587486091194.bed
/tmp/adamTestMvnnKuH0eo/TempSuite3187179379453006607
/tmp/adamTestMvnnKuH0eo/TempSuite1122840295291439064
/tmp/adamTestMvnnKuH0eo/.TempSuite7454625837771834503.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1903619295640049564.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1903619295640049564.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1903619295640049564.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1903619295640049564.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1903619295640049564.adam/.part-00000-f288c8f5-3ab5-49fa-9b98-f3a9cb688587-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1903619295640049564.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1903619295640049564.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1903619295640049564.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1903619295640049564.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1903619295640049564.adam/part-00000-f288c8f5-3ab5-49fa-9b98-f3a9cb688587-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1903619295640049564.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5272864977059517458
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite1614790695275433066
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2128431967888284018
/tmp/adamTestMvnnKuH0eo/TempSuite2940098543067425061.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2940098543067425061.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2940098543067425061.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2940098543067425061.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2940098543067425061.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2940098543067425061.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2940098543067425061.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2940098543067425061.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2940098543067425061.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2940098543067425061.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2940098543067425061.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2940098543067425061.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2940098543067425061.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2940098543067425061.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2940098543067425061.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite648281449513379512.adam
/tmp/adamTestMvnnKuH0eo/TempSuite648281449513379512.adam/.part-00000-34135cac-5f5c-4351-bf88-83519a28703b-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite648281449513379512.adam/part-00000-34135cac-5f5c-4351-bf88-83519a28703b-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite648281449513379512.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite648281449513379512.adam/part-00001-34135cac-5f5c-4351-bf88-83519a28703b-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite648281449513379512.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite648281449513379512.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite648281449513379512.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite648281449513379512.adam/.part-00002-34135cac-5f5c-4351-bf88-83519a28703b-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite648281449513379512.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite648281449513379512.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite648281449513379512.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite648281449513379512.adam/.part-00001-34135cac-5f5c-4351-bf88-83519a28703b-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite648281449513379512.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite648281449513379512.adam/part-00002-34135cac-5f5c-4351-bf88-83519a28703b-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6917775402554682752
/tmp/adamTestMvnnKuH0eo/TempSuite733401243922051821
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7474362979031081542.adam
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7474362979031081542.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7474362979031081542.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7474362979031081542.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7474362979031081542.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7474362979031081542.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7474362979031081542.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7474362979031081542.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7474362979031081542.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7474362979031081542.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7474362979031081542.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7474362979031081542.adam/_metadata
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7474362979031081542.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7474362979031081542.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7474362979031081542.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7474362979031081542.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7474362979031081542.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/javaAC8365682982548050818
/tmp/adamTestMvnnKuH0eo/javaAC8365682982548050818/testRdd.genotype.adam
/tmp/adamTestMvnnKuH0eo/javaAC8365682982548050818/testRdd.genotype.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC8365682982548050818/testRdd.genotype.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/javaAC8365682982548050818/testRdd.genotype.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC8365682982548050818/testRdd.genotype.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/javaAC8365682982548050818/testRdd.genotype.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/javaAC8365682982548050818/testRdd.genotype.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC8365682982548050818/testRdd.genotype.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/javaAC8365682982548050818/testRdd.genotype.adam/_metadata
/tmp/adamTestMvnnKuH0eo/javaAC8365682982548050818/testRdd.genotype.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/javaAC8365682982548050818/testRdd.genotype.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/javaAC8365682982548050818/testRdd.genotype.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC8365682982548050818/testRdd.genotype.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/javaAC8365682982548050818/testRdd.genotype.adam/_header
/tmp/adamTestMvnnKuH0eo/javaAC8365682982548050818/testRdd.genotype.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1000282610498395647
/tmp/adamTestMvnnKuH0eo/8429219057769762152
/tmp/adamTestMvnnKuH0eo/8429219057769762152/binned.adam
/tmp/adamTestMvnnKuH0eo/8429219057769762152/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/8429219057769762152/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/8429219057769762152/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/8429219057769762152/binned.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/8429219057769762152/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/8429219057769762152/binned.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/8429219057769762152/binned.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/8429219057769762152/binned.adam/_metadata
/tmp/adamTestMvnnKuH0eo/8429219057769762152/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/8429219057769762152/binned.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/8429219057769762152/binned.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/8429219057769762152/binned.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/8429219057769762152/binned.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/8429219057769762152/binned.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite442106901381728112.bed
/tmp/adamTestMvnnKuH0eo/TempSuite442106901381728112.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite442106901381728112.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite442106901381728112.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite442106901381728112.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7832071374515917706fragments.adam
/tmp/adamTestMvnnKuH0eo/TempSuite7832071374515917706fragments.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7832071374515917706fragments.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7832071374515917706fragments.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7832071374515917706fragments.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7832071374515917706fragments.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7832071374515917706fragments.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7832071374515917706fragments.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7832071374515917706fragments.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7832071374515917706fragments.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7832071374515917706fragments.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7832071374515917706fragments.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7832071374515917706fragments.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7832071374515917706fragments.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7832071374515917706fragments.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5100154103143562646
/tmp/adamTestMvnnKuH0eo/4703306669467504266
/tmp/adamTestMvnnKuH0eo/4703306669467504266/.artificial.cram.crc
/tmp/adamTestMvnnKuH0eo/4703306669467504266/artificial.cram
/tmp/adamTestMvnnKuH0eo/TempSuite8470466118728359534
/tmp/adamTestMvnnKuH0eo/TempSuite907751056987185413_1.fq
/tmp/adamTestMvnnKuH0eo/TempSuite907751056987185413_1.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite907751056987185413_1.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite907751056987185413_1.fq/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite907751056987185413_1.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8381236930854847698.adam
/tmp/adamTestMvnnKuH0eo/TempSuite8381236930854847698.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8381236930854847698.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8381236930854847698.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8381236930854847698.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8381236930854847698.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8381236930854847698.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8381236930854847698.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8381236930854847698.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8381236930854847698.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8381236930854847698.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8381236930854847698.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8381236930854847698.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8381236930854847698.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite8381236930854847698.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/random.vcf3830927831162357957.vcf
/tmp/adamTestMvnnKuH0eo/hg19.chrM.2bit5594307242871923346.chrM.2bit
/tmp/adamTestMvnnKuH0eo/TempSuite4133319449536913362
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/referenceName=2
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/referenceName=2/positionBin=189
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/referenceName=2/positionBin=189/.part-00000-c725025e-341d-43fd-a470-efb588539b6b.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/referenceName=2/positionBin=189/part-00000-c725025e-341d-43fd-a470-efb588539b6b.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/referenceName=1
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/referenceName=1/positionBin=26
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/referenceName=1/positionBin=26/.part-00000-c725025e-341d-43fd-a470-efb588539b6b.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/referenceName=1/positionBin=26/part-00000-c725025e-341d-43fd-a470-efb588539b6b.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/referenceName=1/positionBin=240/.part-00000-c725025e-341d-43fd-a470-efb588539b6b.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/referenceName=1/positionBin=240/part-00000-c725025e-341d-43fd-a470-efb588539b6b.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2876561217591549550.adam/_partitionedByStartPos
/tmp/adamTestMvnnKuH0eo/7244850197283435704
/tmp/adamTestMvnnKuH0eo/7244850197283435704/sorted.lex.vcf
/tmp/adamTestMvnnKuH0eo/7244850197283435704/.sorted.lex.vcf.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite197002033046013733
/tmp/adamTestMvnnKuH0eo/TempSuite7276887679250370558
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite5130783785638254886.fasta
/tmp/adamTestMvnnKuH0eo/4977713316505735835
/tmp/adamTestMvnnKuH0eo/4977713316505735835/artificial.cram
/tmp/adamTestMvnnKuH0eo/4977713316505735835/artificial.cram/part-r-00000.cram
/tmp/adamTestMvnnKuH0eo/4977713316505735835/artificial.cram/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/4977713316505735835/artificial.cram/_SUCCESS
/tmp/adamTestMvnnKuH0eo/4977713316505735835/artificial.cram/.part-r-00000.cram.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1089271682857227038
/tmp/adamTestMvnnKuH0eo/TempSuite2291645393317255110.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2291645393317255110.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2291645393317255110.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2291645393317255110.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2291645393317255110.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2291645393317255110.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2291645393317255110.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2291645393317255110.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2291645393317255110.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2291645393317255110.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2291645393317255110.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2291645393317255110.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite2291645393317255110.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6688137431183978022
/tmp/adamTestMvnnKuH0eo/6639434335277149858
/tmp/adamTestMvnnKuH0eo/6639434335277149858/genotypes.lex.adam
/tmp/adamTestMvnnKuH0eo/6639434335277149858/genotypes.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/6639434335277149858/genotypes.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/6639434335277149858/genotypes.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/6639434335277149858/genotypes.lex.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/6639434335277149858/genotypes.lex.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/6639434335277149858/genotypes.lex.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/6639434335277149858/genotypes.lex.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/6639434335277149858/genotypes.lex.adam/_metadata
/tmp/adamTestMvnnKuH0eo/6639434335277149858/genotypes.lex.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/6639434335277149858/genotypes.lex.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/6639434335277149858/genotypes.lex.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/6639434335277149858/genotypes.lex.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/6639434335277149858/genotypes.lex.adam/_header
/tmp/adamTestMvnnKuH0eo/6639434335277149858/genotypes.lex.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite433608220316962279.bed
/tmp/adamTestMvnnKuH0eo/TempSuite4540111837171307403
/tmp/adamTestMvnnKuH0eo/TempSuite2943824612505746540.fa
/tmp/adamTestMvnnKuH0eo/TempSuite2943824612505746540.fa/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2943824612505746540.fa/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2943824612505746540.fa/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite2943824612505746540.fa/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4375089485533500759.bed
/tmp/adamTestMvnnKuH0eo/TempSuite4375089485533500759.bed/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4375089485533500759.bed/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4375089485533500759.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4375089485533500759.bed/part-00003
/tmp/adamTestMvnnKuH0eo/TempSuite4375089485533500759.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4375089485533500759.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite4375089485533500759.bed/part-00002
/tmp/adamTestMvnnKuH0eo/TempSuite4375089485533500759.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4375089485533500759.bed/part-00001
/tmp/adamTestMvnnKuH0eo/TempSuite4375089485533500759.bed/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1151895253688314750.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1151895253688314750.adam/.part-00000-be411aa3-897b-444d-8ae2-8c0d36bcf838-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1151895253688314750.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1151895253688314750.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1151895253688314750.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1151895253688314750.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1151895253688314750.adam/part-00000-be411aa3-897b-444d-8ae2-8c0d36bcf838-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1151895253688314750.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1151895253688314750.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1151895253688314750.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1151895253688314750.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite1522578231126887664
/tmp/adamTestMvnnKuH0eo/4382216510816946325
/tmp/adamTestMvnnKuH0eo/4382216510816946325/genotypes.adam
/tmp/adamTestMvnnKuH0eo/4382216510816946325/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/4382216510816946325/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/4382216510816946325/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/4382216510816946325/genotypes.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/4382216510816946325/genotypes.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/4382216510816946325/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/4382216510816946325/genotypes.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/4382216510816946325/genotypes.adam/_metadata
/tmp/adamTestMvnnKuH0eo/4382216510816946325/genotypes.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/4382216510816946325/genotypes.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/4382216510816946325/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/4382216510816946325/genotypes.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/4382216510816946325/genotypes.adam/_header
/tmp/adamTestMvnnKuH0eo/4382216510816946325/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256
/tmp/adamTestMvnnKuH0eo/TempSuite8680074415802689120.fq
/tmp/adamTestMvnnKuH0eo/TempSuite8680074415802689120.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8680074415802689120.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8680074415802689120.fq/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite8680074415802689120.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4066309729580549681.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4066309729580549681.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4066309729580549681.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4066309729580549681.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4066309729580549681.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4066309729580549681.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4066309729580549681.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4066309729580549681.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4066309729580549681.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4066309729580549681.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4066309729580549681.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4066309729580549681.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4066309729580549681.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4066309729580549681.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4066309729580549681.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6598951405047101794
/tmp/adamTestMvnnKuH0eo/TempSuite8006236155160178458.fq
/tmp/adamTestMvnnKuH0eo/TempSuite8006236155160178458.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8006236155160178458.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8006236155160178458.fq/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite8006236155160178458.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6142744871727079738
/tmp/adamTestMvnnKuH0eo/5301180227134327260
/tmp/adamTestMvnnKuH0eo/5301180227134327260/unordered.sam
/tmp/adamTestMvnnKuH0eo/5301180227134327260/.unordered.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7735590079393032634
/tmp/adamTestMvnnKuH0eo/noqual134985757688749297
/tmp/adamTestMvnnKuH0eo/noqual134985757688749297/noqualB.fastq
/tmp/adamTestMvnnKuH0eo/noqual134985757688749297/noqualB.fastq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/noqual134985757688749297/noqualB.fastq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/noqual134985757688749297/noqualB.fastq/part-00000
/tmp/adamTestMvnnKuH0eo/noqual134985757688749297/noqualB.fastq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/noqual134985757688749297/noqualA.sam
/tmp/adamTestMvnnKuH0eo/noqual134985757688749297/noqualA.sam/part-r-00000.sam
/tmp/adamTestMvnnKuH0eo/noqual134985757688749297/noqualA.sam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/noqual134985757688749297/noqualA.sam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/noqual134985757688749297/noqualA.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8119528623509163677.bed
/tmp/adamTestMvnnKuH0eo/TempSuite8119528623509163677.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8119528623509163677.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8119528623509163677.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite8119528623509163677.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2083211527780483005
/tmp/adamTestMvnnKuH0eo/TempSuite1932050877339872991.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1932050877339872991.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1932050877339872991.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1932050877339872991.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1932050877339872991.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1932050877339872991.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1932050877339872991.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1932050877339872991.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1932050877339872991.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1932050877339872991.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1932050877339872991.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/sample_coverage.bed5263393981621983289.bed
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4653636835696936113
/tmp/adamTestMvnnKuH0eo/.TempSuite886322044938792652.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8689860193257851181
/tmp/adamTestMvnnKuH0eo/artificial.cram9122902358790446880.cram
/tmp/adamTestMvnnKuH0eo/TempSuite5029331543860580857
/tmp/adamTestMvnnKuH0eo/artificial.sam6101888367726326763.sam
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite7123638151101053831
/tmp/adamTestMvnnKuH0eo/5527920056850617403
/tmp/adamTestMvnnKuH0eo/5527920056850617403/sorted-variants.vcf
/tmp/adamTestMvnnKuH0eo/5527920056850617403/.sorted-variants.vcf.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite200452543951283243.gff3
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite200452543951283243.gff3/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite200452543951283243.gff3/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite200452543951283243.gff3/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite200452543951283243.gff3/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite200452543951283243.gff3/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite200452543951283243.gff3/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite200452543951283243.gff3/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite200452543951283243.gff3/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite200452543951283243.gff3/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite200452543951283243.gff3/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5740821358311233418.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5740821358311233418.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5740821358311233418.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5740821358311233418.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5740821358311233418.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5740821358311233418.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5740821358311233418.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5740821358311233418.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5740821358311233418.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5740821358311233418.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5740821358311233418.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5647471374515155122.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5647471374515155122.adam/part-00000-4bcdf7ab-0ff1-4f08-8cb0-4344398b1ff7-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5647471374515155122.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5647471374515155122.adam/.part-00000-4bcdf7ab-0ff1-4f08-8cb0-4344398b1ff7-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5647471374515155122.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5647471374515155122.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5647471374515155122.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5647471374515155122.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5647471374515155122.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5647471374515155122.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5647471374515155122.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7038558588586209811.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4881893752168148380
/tmp/adamTestMvnnKuH0eo/TempSuite753682164985623414.adam
/tmp/adamTestMvnnKuH0eo/TempSuite753682164985623414.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite753682164985623414.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite753682164985623414.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite753682164985623414.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite753682164985623414.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite753682164985623414.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite753682164985623414.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite753682164985623414.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite753682164985623414.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite753682164985623414.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6096434743600013365
/tmp/adamTestMvnnKuH0eo/TempSuite4276152055242333153
/tmp/adamTestMvnnKuH0eo/TempSuite1293287432599027713.fq
/tmp/adamTestMvnnKuH0eo/TempSuite7656023762016838488
/tmp/adamTestMvnnKuH0eo/TempSuite1267367136362189114
/tmp/adamTestMvnnKuH0eo/TempSuite9125970328764738159.adam
/tmp/adamTestMvnnKuH0eo/TempSuite9125970328764738159.adam/.part-00000-52b7266f-1440-4b32-9486-e157106f389a-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9125970328764738159.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9125970328764738159.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9125970328764738159.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9125970328764738159.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite9125970328764738159.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite9125970328764738159.adam/part-00000-52b7266f-1440-4b32-9486-e157106f389a-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite9125970328764738159.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite4696685352126220644.bed
/tmp/adamTestMvnnKuH0eo/TempSuite4696685352126220644.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4696685352126220644.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4696685352126220644.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite4696685352126220644.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3316838948665865165.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3316838948665865165.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3316838948665865165.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3316838948665865165.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3316838948665865165.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3316838948665865165.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3316838948665865165.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3316838948665865165.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3316838948665865165.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3316838948665865165.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3316838948665865165.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3316838948665865165.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3316838948665865165.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3316838948665865165.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite3316838948665865165.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8775148016854746538
/tmp/adamTestMvnnKuH0eo/TempSuite5475886244146097187.sam
/tmp/adamTestMvnnKuH0eo/TempSuite5475886244146097187.sam/part-r-00000.sam
/tmp/adamTestMvnnKuH0eo/TempSuite5475886244146097187.sam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5475886244146097187.sam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5475886244146097187.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1702936581920959345
/tmp/adamTestMvnnKuH0eo/1395571440531728864
/tmp/adamTestMvnnKuH0eo/1395571440531728864/.small.vcf.bgz.crc
/tmp/adamTestMvnnKuH0eo/1395571440531728864/small.vcf.bgz
/tmp/adamTestMvnnKuH0eo/TempSuite526834135373920298
/tmp/adamTestMvnnKuH0eo/TempSuite3776005123633352825.bed
/tmp/adamTestMvnnKuH0eo/TempSuite3776005123633352825.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3776005123633352825.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3776005123633352825.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite3776005123633352825.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7453058419290102611
/tmp/adamTestMvnnKuH0eo/bqsr1.sam1567959979637710823.sam
/tmp/adamTestMvnnKuH0eo/7592444387771845059
/tmp/adamTestMvnnKuH0eo/7592444387771845059/unordered.adam
/tmp/adamTestMvnnKuH0eo/7592444387771845059/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/7592444387771845059/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/7592444387771845059/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/7592444387771845059/unordered.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/7592444387771845059/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/7592444387771845059/unordered.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/7592444387771845059/unordered.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/7592444387771845059/unordered.adam/_metadata
/tmp/adamTestMvnnKuH0eo/7592444387771845059/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/7592444387771845059/unordered.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/7592444387771845059/unordered.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/7592444387771845059/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/7592444387771845059/unordered.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/7592444387771845059/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3560028433771200137.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3560028433771200137.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3560028433771200137.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3560028433771200137.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3560028433771200137.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3560028433771200137.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3560028433771200137.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3560028433771200137.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3560028433771200137.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3560028433771200137.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3560028433771200137.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3560028433771200137.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3560028433771200137.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3560028433771200137.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3560028433771200137.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5351759608827027586
/tmp/adamTestMvnnKuH0eo/TempSuite3763558686544871343.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3763558686544871343.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3763558686544871343.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3763558686544871343.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3763558686544871343.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3763558686544871343.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3763558686544871343.adam/.part-00000-2ec0eb06-2d5b-4afa-94d9-706d8096b022-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3763558686544871343.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3763558686544871343.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3763558686544871343.adam/part-00000-2ec0eb06-2d5b-4afa-94d9-706d8096b022-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3763558686544871343.adam/_header
/tmp/adamTestMvnnKuH0eo/sorted.sam5742994246805797132.sam
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8869348292307111571.narrowPeak
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8869348292307111571.narrowPeak/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8869348292307111571.narrowPeak/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8869348292307111571.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8869348292307111571.narrowPeak/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8869348292307111571.narrowPeak/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8869348292307111571.narrowPeak/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8869348292307111571.narrowPeak/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8869348292307111571.narrowPeak/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8869348292307111571.narrowPeak/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8869348292307111571.narrowPeak/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2071443152819087641.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2071443152819087641.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2071443152819087641.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2071443152819087641.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2071443152819087641.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2071443152819087641.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2071443152819087641.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2071443152819087641.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2071443152819087641.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2071443152819087641.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2071443152819087641.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2071443152819087641.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite2071443152819087641.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite485713062208246553
/tmp/adamTestMvnnKuH0eo/TempSuite5804005713312615004
/tmp/adamTestMvnnKuH0eo/TempSuite3770612837045600532.bed
/tmp/adamTestMvnnKuH0eo/TempSuite3770612837045600532.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3770612837045600532.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3770612837045600532.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite3770612837045600532.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6843794670170161231
/tmp/adamTestMvnnKuH0eo/TempSuite8698469067600610471.fq
/tmp/adamTestMvnnKuH0eo/TempSuite8698469067600610471.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8698469067600610471.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8698469067600610471.fq/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite8698469067600610471.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/.TempSuite5207835992834695398_2.fq.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5127852831574731888.bed
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5127852831574731888.bed/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5127852831574731888.bed/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5127852831574731888.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5127852831574731888.bed/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5127852831574731888.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5127852831574731888.bed/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5127852831574731888.bed/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5127852831574731888.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5127852831574731888.bed/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5127852831574731888.bed/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5228396246606315258.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5228396246606315258.adam/.part-00002-001bdabb-bc09-4f03-8235-0680964676a8-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5228396246606315258.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5228396246606315258.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5228396246606315258.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5228396246606315258.adam/part-00000-001bdabb-bc09-4f03-8235-0680964676a8-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5228396246606315258.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5228396246606315258.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5228396246606315258.adam/.part-00001-001bdabb-bc09-4f03-8235-0680964676a8-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5228396246606315258.adam/.part-00000-001bdabb-bc09-4f03-8235-0680964676a8-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5228396246606315258.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite5228396246606315258.adam/part-00002-001bdabb-bc09-4f03-8235-0680964676a8-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5228396246606315258.adam/part-00001-001bdabb-bc09-4f03-8235-0680964676a8-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5579024854299548032.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5579024854299548032.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5579024854299548032.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5579024854299548032.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5579024854299548032.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5579024854299548032.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5579024854299548032.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5579024854299548032.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5579024854299548032.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5579024854299548032.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5579024854299548032.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5579024854299548032.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite5579024854299548032.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2346300622420657749.interval_list
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2346300622420657749.interval_list/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2346300622420657749.interval_list/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2346300622420657749.interval_list/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2346300622420657749.interval_list/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2346300622420657749.interval_list/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2346300622420657749.interval_list/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2346300622420657749.interval_list/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2346300622420657749.interval_list/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2346300622420657749.interval_list/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2346300622420657749.interval_list/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3510446467270453920
/tmp/adamTestMvnnKuH0eo/TempSuite4506244067570844092
/tmp/adamTestMvnnKuH0eo/8286713880933944227
/tmp/adamTestMvnnKuH0eo/8286713880933944227/.artificial.cram.crc
/tmp/adamTestMvnnKuH0eo/8286713880933944227/artificial.cram
/tmp/adamTestMvnnKuH0eo/3403412616744383379
/tmp/adamTestMvnnKuH0eo/3403412616744383379/predicate.3.adam
/tmp/adamTestMvnnKuH0eo/3403412616744383379/predicate.3.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/3403412616744383379/predicate.3.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/3403412616744383379/predicate.3.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/3403412616744383379/predicate.3.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/3403412616744383379/predicate.3.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/3403412616744383379/predicate.3.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/3403412616744383379/predicate.3.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/3403412616744383379/predicate.3.adam/_metadata
/tmp/adamTestMvnnKuH0eo/3403412616744383379/predicate.3.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/3403412616744383379/predicate.3.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/3403412616744383379/predicate.3.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/3403412616744383379/predicate.3.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/3403412616744383379/predicate.3.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/3403412616744383379/predicate.3.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3965450555697370308.bam
/tmp/adamTestMvnnKuH0eo/TempSuite3965450555697370308.bam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3965450555697370308.bam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3965450555697370308.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3965450555697370308.bam/part-r-00000.bam
/tmp/adamTestMvnnKuH0eo/TempSuite5711338638199992100
/tmp/adamTestMvnnKuH0eo/TempSuite5685156677629627344.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5685156677629627344.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5685156677629627344.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5685156677629627344.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5685156677629627344.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5685156677629627344.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5685156677629627344.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5685156677629627344.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5685156677629627344.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5685156677629627344.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5685156677629627344.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5685156677629627344.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5685156677629627344.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5685156677629627344.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5685156677629627344.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite150104863709999255
/tmp/adamTestMvnnKuH0eo/8778125422892429208
/tmp/adamTestMvnnKuH0eo/8778125422892429208/out.bam
/tmp/adamTestMvnnKuH0eo/8778125422892429208/out.bam_head
/tmp/adamTestMvnnKuH0eo/8778125422892429208/.out.bam.crc
/tmp/adamTestMvnnKuH0eo/8778125422892429208/out.bam_tail
/tmp/adamTestMvnnKuH0eo/8778125422892429208/out.bam_tail/.part-r-00002.bam.crc
/tmp/adamTestMvnnKuH0eo/8778125422892429208/out.bam_tail/part-r-00002.bam
/tmp/adamTestMvnnKuH0eo/8778125422892429208/out.bam_tail/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/8778125422892429208/out.bam_tail/part-r-00001.bam
/tmp/adamTestMvnnKuH0eo/8778125422892429208/out.bam_tail/_SUCCESS
/tmp/adamTestMvnnKuH0eo/8778125422892429208/out.bam_tail/part-r-00003.bam
/tmp/adamTestMvnnKuH0eo/8778125422892429208/out.bam_tail/.part-r-00003.bam.crc
/tmp/adamTestMvnnKuH0eo/8778125422892429208/out.bam_tail/.part-r-00000.bam.crc
/tmp/adamTestMvnnKuH0eo/8778125422892429208/out.bam_tail/part-r-00000.bam
/tmp/adamTestMvnnKuH0eo/8778125422892429208/out.bam_tail/.part-r-00001.bam.crc
/tmp/adamTestMvnnKuH0eo/8778125422892429208/.out.bam_head.crc
/tmp/adamTestMvnnKuH0eo/ordered.sam1127405805787739218.sam
/tmp/adamTestMvnnKuH0eo/7607272197717740789
/tmp/adamTestMvnnKuH0eo/7607272197717740789/unordered.sam
/tmp/adamTestMvnnKuH0eo/7607272197717740789/.unordered.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite939207791801915025
/tmp/adamTestMvnnKuH0eo/TempSuite9094193480742228861
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8972955449199107340
/tmp/adamTestMvnnKuH0eo/TempSuite1888342128908895561
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5797507120617460866
/tmp/adamTestMvnnKuH0eo/8692068719274223128
/tmp/adamTestMvnnKuH0eo/8692068719274223128/.readname_sorted.sam.crc
/tmp/adamTestMvnnKuH0eo/8692068719274223128/readname_sorted.sam
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6407623124869574117.bed
/tmp/adamTestMvnnKuH0eo/.FeatureDatasetFunctionsSuite1288445259864574712.bed.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite4942869530126832240
/tmp/adamTestMvnnKuH0eo/.TempSuite3813979025285510215.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7245514333955322733
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5127852831574731888
/tmp/adamTestMvnnKuH0eo/TempSuite5207835992834695398
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam/referenceName=13
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam/referenceName=13/positionBin=0/.part-00000-5bc991e4-8132-4cc9-a590-35a8d4cd5388.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam/referenceName=13/positionBin=0/part-00000-5bc991e4-8132-4cc9-a590-35a8d4cd5388.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam/referenceName=2
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam/referenceName=2/positionBin=0/.part-00000-5bc991e4-8132-4cc9-a590-35a8d4cd5388.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam/referenceName=2/positionBin=0/part-00000-5bc991e4-8132-4cc9-a590-35a8d4cd5388.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam/referenceName=1
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam/referenceName=1/positionBin=0/.part-00000-5bc991e4-8132-4cc9-a590-35a8d4cd5388.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam/referenceName=1/positionBin=0/part-00000-5bc991e4-8132-4cc9-a590-35a8d4cd5388.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite1270511615608543256.adam/_partitionedByStartPos
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7660693963005115546
/tmp/adamTestMvnnKuH0eo/TempSuite5752036365515139526.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5752036365515139526.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5752036365515139526.adam/.part-00003-0dd5e147-3968-42ca-863d-843995bc6ffa-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5752036365515139526.adam/part-00000-0dd5e147-3968-42ca-863d-843995bc6ffa-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5752036365515139526.adam/part-00003-0dd5e147-3968-42ca-863d-843995bc6ffa-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5752036365515139526.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5752036365515139526.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5752036365515139526.adam/.part-00000-0dd5e147-3968-42ca-863d-843995bc6ffa-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5752036365515139526.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5752036365515139526.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5752036365515139526.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5752036365515139526.adam/.part-00005-0dd5e147-3968-42ca-863d-843995bc6ffa-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5752036365515139526.adam/part-00005-0dd5e147-3968-42ca-863d-843995bc6ffa-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6407623124869574117
/tmp/adamTestMvnnKuH0eo/TempSuite8689860193257851181.adam
/tmp/adamTestMvnnKuH0eo/TempSuite8689860193257851181.adam/part-00000-49459f58-d4b9-4918-8c7c-aada0b18ef88-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8689860193257851181.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8689860193257851181.adam/.part-00000-49459f58-d4b9-4918-8c7c-aada0b18ef88-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8689860193257851181.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8689860193257851181.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8689860193257851181.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8689860193257851181.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8689860193257851181.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8689860193257851181.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8689860193257851181.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite1246725759441020600.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1246725759441020600.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1246725759441020600.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1246725759441020600.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1246725759441020600.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1246725759441020600.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1246725759441020600.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1246725759441020600.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1246725759441020600.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1246725759441020600.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1246725759441020600.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1246725759441020600.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1246725759441020600.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1246725759441020600.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1246725759441020600.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1246725759441020600.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1246725759441020600.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1246725759441020600.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite1246725759441020600.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5193233043001836639
/tmp/adamTestMvnnKuH0eo/TempSuite6501985171437039933
/tmp/adamTestMvnnKuH0eo/TempSuite9198540296410690032
/tmp/adamTestMvnnKuH0eo/TempSuite8022897495612916063
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite1450388302068087572.fasta
/tmp/adamTestMvnnKuH0eo/TempSuite1247362493153167047
/tmp/adamTestMvnnKuH0eo/6470214791794462893
/tmp/adamTestMvnnKuH0eo/6470214791794462893/genotypes.lex.adam
/tmp/adamTestMvnnKuH0eo/6470214791794462893/genotypes.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/6470214791794462893/genotypes.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/6470214791794462893/genotypes.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/6470214791794462893/genotypes.lex.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/6470214791794462893/genotypes.lex.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/6470214791794462893/genotypes.lex.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/6470214791794462893/genotypes.lex.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/6470214791794462893/genotypes.lex.adam/_metadata
/tmp/adamTestMvnnKuH0eo/6470214791794462893/genotypes.lex.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/6470214791794462893/genotypes.lex.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/6470214791794462893/genotypes.lex.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/6470214791794462893/genotypes.lex.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/6470214791794462893/genotypes.lex.adam/_header
/tmp/adamTestMvnnKuH0eo/6470214791794462893/genotypes.lex.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5207835992834695398_2.fq
/tmp/adamTestMvnnKuH0eo/TempSuite925286910754185191
/tmp/adamTestMvnnKuH0eo/TempSuite6521047929767081561
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite349157456023705499.gff3
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2128431967888284018.gff3
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2128431967888284018.gff3/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2128431967888284018.gff3/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2128431967888284018.gff3/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2128431967888284018.gff3/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2128431967888284018.gff3/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2128431967888284018.gff3/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2128431967888284018.gff3/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2128431967888284018.gff3/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2128431967888284018.gff3/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2128431967888284018.gff3/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2725533813379114136
/tmp/adamTestMvnnKuH0eo/TempSuite2748610884787985620.bed
/tmp/adamTestMvnnKuH0eo/TempSuite2748610884787985620.bed/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2748610884787985620.bed/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2748610884787985620.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2748610884787985620.bed/part-00003
/tmp/adamTestMvnnKuH0eo/TempSuite2748610884787985620.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2748610884787985620.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite2748610884787985620.bed/part-00002
/tmp/adamTestMvnnKuH0eo/TempSuite2748610884787985620.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2748610884787985620.bed/part-00001
/tmp/adamTestMvnnKuH0eo/TempSuite2748610884787985620.bed/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8697433579578687187.bed
/tmp/adamTestMvnnKuH0eo/TempSuite8697433579578687187.bed/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8697433579578687187.bed/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8697433579578687187.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8697433579578687187.bed/part-00003
/tmp/adamTestMvnnKuH0eo/TempSuite8697433579578687187.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8697433579578687187.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite8697433579578687187.bed/part-00002
/tmp/adamTestMvnnKuH0eo/TempSuite8697433579578687187.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8697433579578687187.bed/part-00001
/tmp/adamTestMvnnKuH0eo/TempSuite8697433579578687187.bed/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5711338638199992100.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5711338638199992100.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5711338638199992100.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5711338638199992100.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5711338638199992100.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5711338638199992100.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5711338638199992100.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5711338638199992100.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5711338638199992100.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5711338638199992100.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5711338638199992100.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1763313213517507281.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1763313213517507281.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1763313213517507281.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1763313213517507281.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1763313213517507281.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1763313213517507281.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1763313213517507281.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1763313213517507281.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1763313213517507281.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1763313213517507281.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1763313213517507281.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1763313213517507281.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1763313213517507281.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1763313213517507281.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1763313213517507281.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7891193604591542546.bed
/tmp/adamTestMvnnKuH0eo/TempSuite7891193604591542546.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7891193604591542546.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7891193604591542546.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite7891193604591542546.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8170652468549241801
/tmp/adamTestMvnnKuH0eo/TempSuite8222525738887766622
/tmp/adamTestMvnnKuH0eo/TempSuite8936794692634876819.adam
/tmp/adamTestMvnnKuH0eo/TempSuite8936794692634876819.adam/part-00000-a78d05ed-65d5-40ae-ba26-3fd825d8bf62-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8936794692634876819.adam/.part-00000-a78d05ed-65d5-40ae-ba26-3fd825d8bf62-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8936794692634876819.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8936794692634876819.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8936794692634876819.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8936794692634876819.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8936794692634876819.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8936794692634876819.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8936794692634876819.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8936794692634876819.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite6977089967776602825
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/referenceName=1
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/referenceName=1/positionBin=14/.part-00000-c7457eb8-1537-415b-b03c-42e01d556a4a.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/referenceName=1/positionBin=14/part-00000-c7457eb8-1537-415b-b03c-42e01d556a4a.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/referenceName=1/positionBin=169/.part-00001-c7457eb8-1537-415b-b03c-42e01d556a4a.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/referenceName=1/positionBin=169/part-00001-c7457eb8-1537-415b-b03c-42e01d556a4a.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/referenceName=1/positionBin=240/part-00002-c7457eb8-1537-415b-b03c-42e01d556a4a.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/referenceName=1/positionBin=240/.part-00002-c7457eb8-1537-415b-b03c-42e01d556a4a.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/referenceName=1/positionBin=0/.part-00000-c7457eb8-1537-415b-b03c-42e01d556a4a.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/referenceName=1/positionBin=0/part-00000-c7457eb8-1537-415b-b03c-42e01d556a4a.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite755149617435261062.adam/_partitionedByStartPos
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4425412294359863566
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4425412294359863566.interval_list
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4425412294359863566.interval_list/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4425412294359863566.interval_list/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4425412294359863566.interval_list/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4425412294359863566.interval_list/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4425412294359863566.interval_list/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4425412294359863566.interval_list/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4425412294359863566.interval_list/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4425412294359863566.interval_list/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4425412294359863566.interval_list/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4425412294359863566.interval_list/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5740821358311233418
/tmp/adamTestMvnnKuH0eo/TempSuite7965079471583328046.adam
/tmp/adamTestMvnnKuH0eo/TempSuite7965079471583328046.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7965079471583328046.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7965079471583328046.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7965079471583328046.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7965079471583328046.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7965079471583328046.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7965079471583328046.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7965079471583328046.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7965079471583328046.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7965079471583328046.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7965079471583328046.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7965079471583328046.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7965079471583328046.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7965079471583328046.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6295797553889549983.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6295797553889549983.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6295797553889549983.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6295797553889549983.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6295797553889549983.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6295797553889549983.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6295797553889549983.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6295797553889549983.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6295797553889549983.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6295797553889549983.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6295797553889549983.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6295797553889549983.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6295797553889549983.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6295797553889549983.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6295797553889549983.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5888970985523781100
/tmp/adamTestMvnnKuH0eo/TempSuite564119838817864827
/tmp/adamTestMvnnKuH0eo/ordered.sam1011105799384605386.sam
/tmp/adamTestMvnnKuH0eo/TempSuite7402833619761639756.fa
/tmp/adamTestMvnnKuH0eo/TempSuite7402833619761639756.fa/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7402833619761639756.fa/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7402833619761639756.fa/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite7402833619761639756.fa/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4729769379281946288
/tmp/adamTestMvnnKuH0eo/TempSuite8087988098201285236
/tmp/adamTestMvnnKuH0eo/sorted-variants.lex.vcf7274727639025806891.lex.vcf
/tmp/adamTestMvnnKuH0eo/TempSuite8045127988944412048.bed
/tmp/adamTestMvnnKuH0eo/TempSuite8045127988944412048.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8045127988944412048.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8045127988944412048.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite8045127988944412048.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2241562177828186589.sam
/tmp/adamTestMvnnKuH0eo/TempSuite2241562177828186589.sam/part-r-00000.sam
/tmp/adamTestMvnnKuH0eo/TempSuite2241562177828186589.sam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2241562177828186589.sam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2241562177828186589.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7656023762016838488.bam
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite349157456023705499
/tmp/adamTestMvnnKuH0eo/TempSuite8415727947563937347.fq
/tmp/adamTestMvnnKuH0eo/TempSuite8415727947563937347.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8415727947563937347.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8415727947563937347.fq/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite8415727947563937347.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/.FeatureDatasetFunctionsSuite4046534049781642970.interval_list.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7020820036718060965
/tmp/adamTestMvnnKuH0eo/TempSuite6403624312461759731
/tmp/adamTestMvnnKuH0eo/TempSuite8482381543408597007.bed
/tmp/adamTestMvnnKuH0eo/TempSuite8482381543408597007.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8482381543408597007.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8482381543408597007.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite8482381543408597007.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6295797553889549983
/tmp/adamTestMvnnKuH0eo/TempSuite2787100246822141318
/tmp/adamTestMvnnKuH0eo/TempSuite106207825968877718
/tmp/adamTestMvnnKuH0eo/gencode.v7.annotation.trunc10.bed8857955090808625567.v7.annotation.trunc10.bed
/tmp/adamTestMvnnKuH0eo/TempSuite8562285050967088163
/tmp/adamTestMvnnKuH0eo/javaAC2857052703970013415
/tmp/adamTestMvnnKuH0eo/javaAC2857052703970013415/testRdd.coverage.adam
/tmp/adamTestMvnnKuH0eo/javaAC2857052703970013415/testRdd.coverage.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC2857052703970013415/testRdd.coverage.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC2857052703970013415/testRdd.coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC2857052703970013415/testRdd.coverage.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC2857052703970013415/testRdd.coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/javaAC2857052703970013415/testRdd.coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC2857052703970013415/testRdd.coverage.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/javaAC2857052703970013415/testRdd.coverage.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC2857052703970013415/testRdd.coverage.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/javaAC2857052703970013415/testRdd.coverage.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC2857052703970013415/testRdd.coverage.adam/_metadata
/tmp/adamTestMvnnKuH0eo/javaAC2857052703970013415/testRdd.coverage.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC2857052703970013415/testRdd.coverage.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/javaAC2857052703970013415/testRdd.coverage.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/javaAC2857052703970013415/testRdd.coverage.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC2857052703970013415/testRdd.coverage.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/javaAC2857052703970013415/testRdd.coverage.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC2857052703970013415/testRdd.coverage.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6154120957118730055
/tmp/adamTestMvnnKuH0eo/TempSuite4134554858897078204.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4134554858897078204.adam/.part-00000-fc66c665-7f87-4b33-b3f7-a7c466011751-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4134554858897078204.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4134554858897078204.adam/part-00002-fc66c665-7f87-4b33-b3f7-a7c466011751-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4134554858897078204.adam/part-00001-fc66c665-7f87-4b33-b3f7-a7c466011751-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4134554858897078204.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4134554858897078204.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4134554858897078204.adam/.part-00002-fc66c665-7f87-4b33-b3f7-a7c466011751-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4134554858897078204.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4134554858897078204.adam/.part-00001-fc66c665-7f87-4b33-b3f7-a7c466011751-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4134554858897078204.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4134554858897078204.adam/part-00000-fc66c665-7f87-4b33-b3f7-a7c466011751-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4134554858897078204.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite1293287432599027713
/tmp/adamTestMvnnKuH0eo/TempSuite936587555997210546.adam
/tmp/adamTestMvnnKuH0eo/TempSuite936587555997210546.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite936587555997210546.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite936587555997210546.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite936587555997210546.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite936587555997210546.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite936587555997210546.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite936587555997210546.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite936587555997210546.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite936587555997210546.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite936587555997210546.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite936587555997210546.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite936587555997210546.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2291645393317255110
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5925624700008039829.gtf
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7398868761609105242
/tmp/adamTestMvnnKuH0eo/1603159204494-0
/tmp/adamTestMvnnKuH0eo/1603159204494-0/bamReads.adam
/tmp/adamTestMvnnKuH0eo/1603159204494-0/bamReads.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/1603159204494-0/bamReads.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/1603159204494-0/bamReads.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/1603159204494-0/bamReads.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/1603159204494-0/bamReads.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/1603159204494-0/bamReads.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/1603159204494-0/bamReads.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/1603159204494-0/bamReads.adam/_metadata
/tmp/adamTestMvnnKuH0eo/1603159204494-0/bamReads.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/1603159204494-0/bamReads.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/1603159204494-0/bamReads.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/1603159204494-0/bamReads.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/1603159204494-0/bamReads.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/1603159204494-0/bamReads.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1392784756596720124
/tmp/adamTestMvnnKuH0eo/unsorted.sam3844586769342272228.sam
/tmp/adamTestMvnnKuH0eo/TempSuite6521047929767081561.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6521047929767081561.adam/part-00002-fdbe6c73-089d-431d-ab5b-8af4abb91f34-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6521047929767081561.adam/.part-00001-fdbe6c73-089d-431d-ab5b-8af4abb91f34-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6521047929767081561.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6521047929767081561.adam/part-00000-fdbe6c73-089d-431d-ab5b-8af4abb91f34-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6521047929767081561.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6521047929767081561.adam/.part-00002-fdbe6c73-089d-431d-ab5b-8af4abb91f34-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6521047929767081561.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6521047929767081561.adam/.part-00000-fdbe6c73-089d-431d-ab5b-8af4abb91f34-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6521047929767081561.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6521047929767081561.adam/part-00001-fdbe6c73-089d-431d-ab5b-8af4abb91f34-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8869348292307111571
/tmp/adamTestMvnnKuH0eo/TempSuite6652183541260829640.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6652183541260829640.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6652183541260829640.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6652183541260829640.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6652183541260829640.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6652183541260829640.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6652183541260829640.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6652183541260829640.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6652183541260829640.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6652183541260829640.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6652183541260829640.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6652183541260829640.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6652183541260829640.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6652183541260829640.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite6652183541260829640.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209
/tmp/adamTestMvnnKuH0eo/javaAC8528239970739057339
/tmp/adamTestMvnnKuH0eo/javaAC8528239970739057339/testRdd.sequences.adam
/tmp/adamTestMvnnKuH0eo/javaAC8528239970739057339/testRdd.sequences.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC8528239970739057339/testRdd.sequences.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/javaAC8528239970739057339/testRdd.sequences.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC8528239970739057339/testRdd.sequences.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/javaAC8528239970739057339/testRdd.sequences.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC8528239970739057339/testRdd.sequences.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/javaAC8528239970739057339/testRdd.sequences.adam/_metadata
/tmp/adamTestMvnnKuH0eo/javaAC8528239970739057339/testRdd.sequences.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/javaAC8528239970739057339/testRdd.sequences.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/javaAC8528239970739057339/testRdd.sequences.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1672436022340736684.bam
/tmp/adamTestMvnnKuH0eo/TempSuite1672436022340736684.bam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1672436022340736684.bam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1672436022340736684.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1672436022340736684.bam/part-r-00000.bam
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4046534049781642970.interval_list
/tmp/adamTestMvnnKuH0eo/TempSuite9025693138856149923
/tmp/adamTestMvnnKuH0eo/unordered.sam1297971231309367316.sam
/tmp/adamTestMvnnKuH0eo/TempSuite7149369500235631065.adam
/tmp/adamTestMvnnKuH0eo/TempSuite7149369500235631065.adam/.part-00000-a17d9b80-6834-499c-a5dc-58ae956574a0-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7149369500235631065.adam/part-00000-a17d9b80-6834-499c-a5dc-58ae956574a0-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7149369500235631065.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7149369500235631065.adam/.part-00001-a17d9b80-6834-499c-a5dc-58ae956574a0-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7149369500235631065.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7149369500235631065.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7149369500235631065.adam/part-00002-a17d9b80-6834-499c-a5dc-58ae956574a0-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7149369500235631065.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7149369500235631065.adam/part-00001-a17d9b80-6834-499c-a5dc-58ae956574a0-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7149369500235631065.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7149369500235631065.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7149369500235631065.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7149369500235631065.adam/.part-00002-a17d9b80-6834-499c-a5dc-58ae956574a0-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7149369500235631065.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite9060277099709692562
/tmp/adamTestMvnnKuH0eo/unordered.sam4605192824555008617.sam
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4766703786689709319.interval_list
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4766703786689709319.interval_list/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4766703786689709319.interval_list/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4766703786689709319.interval_list/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4766703786689709319.interval_list/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4766703786689709319.interval_list/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4766703786689709319.interval_list/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4766703786689709319.interval_list/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4766703786689709319.interval_list/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4766703786689709319.interval_list/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4766703786689709319.interval_list/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/.TempSuite955423488653943502_1.fq.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/referenceName=2
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/referenceName=2/positionBin=189
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/referenceName=2/positionBin=189/part-00000-53c79790-0656-4b7d-af10-3166fd056956.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/referenceName=2/positionBin=189/.part-00000-53c79790-0656-4b7d-af10-3166fd056956.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/referenceName=1
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/referenceName=1/positionBin=26
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/referenceName=1/positionBin=26/part-00000-53c79790-0656-4b7d-af10-3166fd056956.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/referenceName=1/positionBin=26/.part-00000-53c79790-0656-4b7d-af10-3166fd056956.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/referenceName=1/positionBin=240/part-00000-53c79790-0656-4b7d-af10-3166fd056956.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/referenceName=1/positionBin=240/.part-00000-53c79790-0656-4b7d-af10-3166fd056956.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3676843532750244761.adam/_partitionedByStartPos
/tmp/adamTestMvnnKuH0eo/.TempSuite1888342128908895561.bam.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4871378389863279407
/tmp/adamTestMvnnKuH0eo/TempSuite8153420896677519097
/tmp/adamTestMvnnKuH0eo/.TempSuite5318629884011019053_1.fq.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3700214876436980899
/tmp/adamTestMvnnKuH0eo/TempSuite2488567598482666711
/tmp/adamTestMvnnKuH0eo/TempSuite2787100246822141318.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2787100246822141318.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2787100246822141318.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2787100246822141318.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2787100246822141318.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2787100246822141318.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2787100246822141318.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2787100246822141318.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2787100246822141318.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2787100246822141318.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2787100246822141318.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2787100246822141318.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2787100246822141318.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2255949746064549299.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2255949746064549299.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2255949746064549299.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2255949746064549299.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2255949746064549299.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2255949746064549299.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2255949746064549299.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2255949746064549299.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2255949746064549299.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2255949746064549299.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2255949746064549299.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2255949746064549299.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2255949746064549299.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2255949746064549299.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite2255949746064549299.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3929479931011394677.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3929479931011394677.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3929479931011394677.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3929479931011394677.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3929479931011394677.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3929479931011394677.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3929479931011394677.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3929479931011394677.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3929479931011394677.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3929479931011394677.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3929479931011394677.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3929479931011394677.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3929479931011394677.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3929479931011394677.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3929479931011394677.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite13493418576094214.adam
/tmp/adamTestMvnnKuH0eo/TempSuite13493418576094214.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite13493418576094214.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite13493418576094214.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite13493418576094214.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite13493418576094214.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite13493418576094214.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite13493418576094214.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite13493418576094214.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite13493418576094214.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite13493418576094214.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite13493418576094214.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite13493418576094214.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite13493418576094214.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite13493418576094214.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4453773617231182422.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4453773617231182422.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4453773617231182422.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4453773617231182422.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4453773617231182422.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4453773617231182422.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4453773617231182422.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4453773617231182422.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4453773617231182422.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4453773617231182422.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4453773617231182422.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4453773617231182422.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4453773617231182422.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4453773617231182422.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4453773617231182422.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/random.vcf642502023373241008.vcf
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2324171641532245141
/tmp/adamTestMvnnKuH0eo/TempSuite8098417799638501356.adam
/tmp/adamTestMvnnKuH0eo/TempSuite8098417799638501356.adam/.part-00001-a8fa135d-51ad-483a-9ba7-57772c7dd940-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8098417799638501356.adam/part-00000-a8fa135d-51ad-483a-9ba7-57772c7dd940-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8098417799638501356.adam/part-00002-a8fa135d-51ad-483a-9ba7-57772c7dd940-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8098417799638501356.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8098417799638501356.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8098417799638501356.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8098417799638501356.adam/.part-00000-a8fa135d-51ad-483a-9ba7-57772c7dd940-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8098417799638501356.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8098417799638501356.adam/.part-00002-a8fa135d-51ad-483a-9ba7-57772c7dd940-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8098417799638501356.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8098417799638501356.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8098417799638501356.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8098417799638501356.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite8098417799638501356.adam/part-00001-a8fa135d-51ad-483a-9ba7-57772c7dd940-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4090137527215630225.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4090137527215630225.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4090137527215630225.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4090137527215630225.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4090137527215630225.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4090137527215630225.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4090137527215630225.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4090137527215630225.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4090137527215630225.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4090137527215630225.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4090137527215630225.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4090137527215630225.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite4090137527215630225.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5190257123697598741
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7223431686183825274
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6721263630426651611
/tmp/adamTestMvnnKuH0eo/TempSuite4884983398118459501.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4884983398118459501.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4884983398118459501.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4884983398118459501.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4884983398118459501.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4884983398118459501.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4884983398118459501.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4884983398118459501.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4884983398118459501.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4884983398118459501.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4884983398118459501.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4884983398118459501.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4884983398118459501.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4884983398118459501.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite4884983398118459501.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite936587555997210546
/tmp/adamTestMvnnKuH0eo/TempSuite3934161328762026387.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3934161328762026387.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3934161328762026387.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3934161328762026387.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3934161328762026387.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3934161328762026387.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3934161328762026387.adam/.part-00000-feea8742-2e89-45f9-bb72-4c80da385611-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3934161328762026387.adam/part-00000-feea8742-2e89-45f9-bb72-4c80da385611-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3934161328762026387.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3934161328762026387.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3934161328762026387.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6960586556883501353.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6960586556883501353.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6960586556883501353.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6960586556883501353.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6960586556883501353.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6960586556883501353.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6960586556883501353.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6960586556883501353.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6960586556883501353.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6960586556883501353.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6960586556883501353.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6960586556883501353.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite6960586556883501353.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4133319449536913362.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4133319449536913362.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4133319449536913362.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4133319449536913362.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4133319449536913362.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4133319449536913362.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4133319449536913362.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4133319449536913362.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4133319449536913362.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4133319449536913362.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4133319449536913362.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4322310148418758152
/tmp/adamTestMvnnKuH0eo/TempSuite3867557448778298012.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3867557448778298012.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3867557448778298012.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3867557448778298012.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3867557448778298012.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3867557448778298012.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3867557448778298012.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3867557448778298012.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3867557448778298012.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3867557448778298012.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3867557448778298012.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3867557448778298012.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3867557448778298012.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3867557448778298012.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite3867557448778298012.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5949342764702190503
/tmp/adamTestMvnnKuH0eo/TempSuite3096248246848048855
/tmp/adamTestMvnnKuH0eo/TempSuite2791057831890143252
/tmp/adamTestMvnnKuH0eo/TempSuite2032962132626432998.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2032962132626432998.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2032962132626432998.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2032962132626432998.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2032962132626432998.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2032962132626432998.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2032962132626432998.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2032962132626432998.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2032962132626432998.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2032962132626432998.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2032962132626432998.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2032962132626432998.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2032962132626432998.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2032962132626432998.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2032962132626432998.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4777774133917139807
/tmp/adamTestMvnnKuH0eo/TempSuite1466577754225515000.bed
/tmp/adamTestMvnnKuH0eo/TempSuite1466577754225515000.bed/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1466577754225515000.bed/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1466577754225515000.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1466577754225515000.bed/part-00003
/tmp/adamTestMvnnKuH0eo/TempSuite1466577754225515000.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1466577754225515000.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite1466577754225515000.bed/part-00002
/tmp/adamTestMvnnKuH0eo/TempSuite1466577754225515000.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1466577754225515000.bed/part-00001
/tmp/adamTestMvnnKuH0eo/TempSuite1466577754225515000.bed/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3376022435694819056.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3376022435694819056.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3376022435694819056.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3376022435694819056.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3376022435694819056.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3376022435694819056.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3376022435694819056.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3376022435694819056.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3376022435694819056.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3376022435694819056.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3376022435694819056.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3376022435694819056.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3376022435694819056.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3376022435694819056.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite3376022435694819056.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5351759608827027586.sam
/tmp/adamTestMvnnKuH0eo/TempSuite5351759608827027586.sam/part-r-00000.sam
/tmp/adamTestMvnnKuH0eo/TempSuite5351759608827027586.sam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5351759608827027586.sam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5351759608827027586.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/referenceName=1
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/referenceName=1/positionBin=14/.part-00000-1a474dd6-e790-4eb6-bb21-0c3c41c9b4f9.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/referenceName=1/positionBin=14/part-00000-1a474dd6-e790-4eb6-bb21-0c3c41c9b4f9.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/referenceName=1/positionBin=169/.part-00001-1a474dd6-e790-4eb6-bb21-0c3c41c9b4f9.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/referenceName=1/positionBin=169/part-00001-1a474dd6-e790-4eb6-bb21-0c3c41c9b4f9.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/referenceName=1/positionBin=240/.part-00002-1a474dd6-e790-4eb6-bb21-0c3c41c9b4f9.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/referenceName=1/positionBin=240/part-00002-1a474dd6-e790-4eb6-bb21-0c3c41c9b4f9.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/referenceName=1/positionBin=0/.part-00000-1a474dd6-e790-4eb6-bb21-0c3c41c9b4f9.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/referenceName=1/positionBin=0/part-00000-1a474dd6-e790-4eb6-bb21-0c3c41c9b4f9.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1387523017327233287.adam/_partitionedByStartPos
/tmp/adamTestMvnnKuH0eo/4063133278277777139
/tmp/adamTestMvnnKuH0eo/4063133278277777139/.ordered.sam.crc
/tmp/adamTestMvnnKuH0eo/4063133278277777139/ordered.sam
/tmp/adamTestMvnnKuH0eo/4513742356662480969
/tmp/adamTestMvnnKuH0eo/4513742356662480969/.ordered.sam.crc
/tmp/adamTestMvnnKuH0eo/4513742356662480969/ordered.sam
/tmp/adamTestMvnnKuH0eo/TempSuite8792421997010044436
/tmp/adamTestMvnnKuH0eo/TempSuite3867557448778298012
/tmp/adamTestMvnnKuH0eo/1547625594626238062
/tmp/adamTestMvnnKuH0eo/1547625594626238062/.ordered.sam.crc
/tmp/adamTestMvnnKuH0eo/1547625594626238062/ordered.sam
/tmp/adamTestMvnnKuH0eo/7561625651217667697
/tmp/adamTestMvnnKuH0eo/7561625651217667697/bqsr1.vcf.bgz
/tmp/adamTestMvnnKuH0eo/7561625651217667697/bqsr1.vcf.bgz/.part-r-00000.bgz.crc
/tmp/adamTestMvnnKuH0eo/7561625651217667697/bqsr1.vcf.bgz/.part-r-00003.bgz.crc
/tmp/adamTestMvnnKuH0eo/7561625651217667697/bqsr1.vcf.bgz/part-r-00000.bgz
/tmp/adamTestMvnnKuH0eo/7561625651217667697/bqsr1.vcf.bgz/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/7561625651217667697/bqsr1.vcf.bgz/.part-r-00001.bgz.crc
/tmp/adamTestMvnnKuH0eo/7561625651217667697/bqsr1.vcf.bgz/_SUCCESS
/tmp/adamTestMvnnKuH0eo/7561625651217667697/bqsr1.vcf.bgz/part-r-00001.bgz
/tmp/adamTestMvnnKuH0eo/7561625651217667697/bqsr1.vcf.bgz/part-r-00003.bgz
/tmp/adamTestMvnnKuH0eo/7561625651217667697/bqsr1.vcf.bgz/part-r-00002.bgz
/tmp/adamTestMvnnKuH0eo/7561625651217667697/bqsr1.vcf.bgz/.part-r-00002.bgz.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7082938716871491773.adam
/tmp/adamTestMvnnKuH0eo/TempSuite7082938716871491773.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7082938716871491773.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7082938716871491773.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7082938716871491773.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7082938716871491773.adam/.part-00000-c9d54067-5ddb-4fee-ba5d-8300567a5394-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7082938716871491773.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7082938716871491773.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7082938716871491773.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7082938716871491773.adam/part-00000-c9d54067-5ddb-4fee-ba5d-8300567a5394-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7082938716871491773.adam/_header
/tmp/adamTestMvnnKuH0eo/.FeatureDatasetFunctionsSuite3884467390864553360.gtf.crc
/tmp/adamTestMvnnKuH0eo/2630908563390109006
/tmp/adamTestMvnnKuH0eo/2630908563390109006/variants.lex.adam
/tmp/adamTestMvnnKuH0eo/2630908563390109006/variants.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/2630908563390109006/variants.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/2630908563390109006/variants.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/2630908563390109006/variants.lex.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/2630908563390109006/variants.lex.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/2630908563390109006/variants.lex.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/2630908563390109006/variants.lex.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/2630908563390109006/variants.lex.adam/_metadata
/tmp/adamTestMvnnKuH0eo/2630908563390109006/variants.lex.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/2630908563390109006/variants.lex.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/2630908563390109006/variants.lex.adam/_header
/tmp/adamTestMvnnKuH0eo/2630908563390109006/variants.lex.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/7689514787335374728
/tmp/adamTestMvnnKuH0eo/7689514787335374728/sorted.sam
/tmp/adamTestMvnnKuH0eo/7689514787335374728/.sorted.sam.crc
/tmp/adamTestMvnnKuH0eo/unordered.sam5738505686433135919.sam
/tmp/adamTestMvnnKuH0eo/.TempSuite2924319657653947255.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7061926180294255974.adam
/tmp/adamTestMvnnKuH0eo/TempSuite7061926180294255974.adam/.part-00000-7929c491-3e87-4c11-a734-642c6b567dfe-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7061926180294255974.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7061926180294255974.adam/part-00000-7929c491-3e87-4c11-a734-642c6b567dfe-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7061926180294255974.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7061926180294255974.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7061926180294255974.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7061926180294255974.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7061926180294255974.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite4729769379281946288.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4729769379281946288.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4729769379281946288.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4729769379281946288.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4729769379281946288.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4729769379281946288.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4729769379281946288.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4729769379281946288.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4729769379281946288.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4729769379281946288.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4729769379281946288.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4729769379281946288.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite4729769379281946288.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/8673620086945303534
/tmp/adamTestMvnnKuH0eo/8673620086945303534/out.sam_head
/tmp/adamTestMvnnKuH0eo/8673620086945303534/.out.sam_head.crc
/tmp/adamTestMvnnKuH0eo/8673620086945303534/out.sam_tail
/tmp/adamTestMvnnKuH0eo/8673620086945303534/out.sam_tail/part-r-00002.sam
/tmp/adamTestMvnnKuH0eo/8673620086945303534/out.sam_tail/part-r-00000.sam
/tmp/adamTestMvnnKuH0eo/8673620086945303534/out.sam_tail/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/8673620086945303534/out.sam_tail/_SUCCESS
/tmp/adamTestMvnnKuH0eo/8673620086945303534/out.sam_tail/.part-r-00000.sam.crc
/tmp/adamTestMvnnKuH0eo/8673620086945303534/out.sam_tail/part-r-00003.sam
/tmp/adamTestMvnnKuH0eo/8673620086945303534/out.sam_tail/.part-r-00002.sam.crc
/tmp/adamTestMvnnKuH0eo/8673620086945303534/out.sam_tail/.part-r-00001.sam.crc
/tmp/adamTestMvnnKuH0eo/8673620086945303534/out.sam_tail/part-r-00001.sam
/tmp/adamTestMvnnKuH0eo/8673620086945303534/out.sam_tail/.part-r-00003.sam.crc
/tmp/adamTestMvnnKuH0eo/8673620086945303534/.out.sam.crc
/tmp/adamTestMvnnKuH0eo/8673620086945303534/out.sam
/tmp/adamTestMvnnKuH0eo/TempSuite961031981628660234.bam
/tmp/adamTestMvnnKuH0eo/TempSuite961031981628660234.bam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite961031981628660234.bam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite961031981628660234.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite961031981628660234.bam/part-r-00000.bam
/tmp/adamTestMvnnKuH0eo/TempSuite7058201232536252588.bed
/tmp/adamTestMvnnKuH0eo/TempSuite7058201232536252588.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7058201232536252588.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7058201232536252588.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite7058201232536252588.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/1658698632324501211
/tmp/adamTestMvnnKuH0eo/1658698632324501211/.unordered.bam.crc
/tmp/adamTestMvnnKuH0eo/1658698632324501211/unordered.bam
/tmp/adamTestMvnnKuH0eo/TempSuite4237731373083361276.bed
/tmp/adamTestMvnnKuH0eo/TempSuite4237731373083361276.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4237731373083361276.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4237731373083361276.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite4237731373083361276.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4517609036753500390
/tmp/adamTestMvnnKuH0eo/TempSuite1407940613518697250
/tmp/adamTestMvnnKuH0eo/TempSuite2940098543067425061
/tmp/adamTestMvnnKuH0eo/TempSuite1837857546261814729.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1837857546261814729.adam/.part-00000-64ecb583-497b-41cc-8800-80d578f23365-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1837857546261814729.adam/part-00000-64ecb583-497b-41cc-8800-80d578f23365-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1837857546261814729.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1837857546261814729.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1837857546261814729.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1837857546261814729.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1837857546261814729.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1837857546261814729.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1837857546261814729.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1837857546261814729.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/8704392291780023778
/tmp/adamTestMvnnKuH0eo/8704392291780023778/unordered.sam
/tmp/adamTestMvnnKuH0eo/8704392291780023778/.unordered.sam.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7660693963005115546.narrowPeak
/tmp/adamTestMvnnKuH0eo/TempSuite5272232180492451190
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6096008050621725860.gtf
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6096008050621725860.gtf/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6096008050621725860.gtf/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6096008050621725860.gtf/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6096008050621725860.gtf/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6096008050621725860.gtf/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6096008050621725860.gtf/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6096008050621725860.gtf/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6096008050621725860.gtf/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6096008050621725860.gtf/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6096008050621725860.gtf/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3763558686544871343
/tmp/adamTestMvnnKuH0eo/TempSuite2760544743070836806.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2760544743070836806.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2760544743070836806.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2760544743070836806.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2760544743070836806.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2760544743070836806.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2760544743070836806.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2760544743070836806.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2760544743070836806.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2760544743070836806.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2760544743070836806.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2760544743070836806.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2760544743070836806.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2760544743070836806.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2760544743070836806.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2760544743070836806.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2760544743070836806.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2760544743070836806.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2760544743070836806.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7058201232536252588
/tmp/adamTestMvnnKuH0eo/TempSuite1071767822671956862
/tmp/adamTestMvnnKuH0eo/TempSuite2924319657653947255.sam
/tmp/adamTestMvnnKuH0eo/TempSuite7874536840943684671.adam
/tmp/adamTestMvnnKuH0eo/TempSuite7874536840943684671.adam/.part-00001-0481f12f-1a20-4e5a-a004-123b15bd8ec4-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7874536840943684671.adam/part-00001-0481f12f-1a20-4e5a-a004-123b15bd8ec4-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7874536840943684671.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7874536840943684671.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7874536840943684671.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7874536840943684671.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7874536840943684671.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7874536840943684671.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7874536840943684671.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7874536840943684671.adam/part-00002-0481f12f-1a20-4e5a-a004-123b15bd8ec4-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7874536840943684671.adam/.part-00000-0481f12f-1a20-4e5a-a004-123b15bd8ec4-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7874536840943684671.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite7874536840943684671.adam/part-00000-0481f12f-1a20-4e5a-a004-123b15bd8ec4-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7874536840943684671.adam/.part-00002-0481f12f-1a20-4e5a-a004-123b15bd8ec4-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite853471769084840209.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7965249753713441586.adam
/tmp/adamTestMvnnKuH0eo/TempSuite7965249753713441586.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7965249753713441586.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7965249753713441586.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7965249753713441586.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7965249753713441586.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7965249753713441586.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7965249753713441586.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7965249753713441586.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7965249753713441586.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7965249753713441586.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7965249753713441586.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7965249753713441586.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7965249753713441586.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7965249753713441586.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7965249753713441586.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7965249753713441586.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7965249753713441586.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7965249753713441586.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/7543450032421395950
/tmp/adamTestMvnnKuH0eo/7543450032421395950/unordered.sam
/tmp/adamTestMvnnKuH0eo/7543450032421395950/.unordered.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite8073163017639733021.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/3623346847916304004
/tmp/adamTestMvnnKuH0eo/3623346847916304004/unordered.adam
/tmp/adamTestMvnnKuH0eo/3623346847916304004/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/3623346847916304004/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/3623346847916304004/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/3623346847916304004/unordered.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/3623346847916304004/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/3623346847916304004/unordered.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/3623346847916304004/unordered.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/3623346847916304004/unordered.adam/_metadata
/tmp/adamTestMvnnKuH0eo/3623346847916304004/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/3623346847916304004/unordered.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/3623346847916304004/unordered.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/3623346847916304004/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/3623346847916304004/unordered.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/3623346847916304004/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6884182617913683219
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite6522653129138046629
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7474362979031081542
/tmp/adamTestMvnnKuH0eo/TempSuite3231490026798809759
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5780765073240443096.gtf
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5780765073240443096.gtf/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5780765073240443096.gtf/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5780765073240443096.gtf/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5780765073240443096.gtf/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5780765073240443096.gtf/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5780765073240443096.gtf/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5780765073240443096.gtf/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5780765073240443096.gtf/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5780765073240443096.gtf/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5780765073240443096.gtf/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3135070745130621201
/tmp/adamTestMvnnKuH0eo/TempSuite1233603653535310546.fa
/tmp/adamTestMvnnKuH0eo/TempSuite1233603653535310546.fa/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1233603653535310546.fa/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1233603653535310546.fa/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite1233603653535310546.fa/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1151895253688314750
/tmp/adamTestMvnnKuH0eo/1603159081553-0
/tmp/adamTestMvnnKuH0eo/1603159081553-0/.test.gvcf.vcf.crc
/tmp/adamTestMvnnKuH0eo/1603159081553-0/test.gvcf.vcf
/tmp/adamTestMvnnKuH0eo/TempSuite5205672201322075644
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034
/tmp/adamTestMvnnKuH0eo/TempSuite8346559689032116575
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7790959667754024668
/tmp/adamTestMvnnKuH0eo/TempSuite563715411477372219.adam
/tmp/adamTestMvnnKuH0eo/TempSuite563715411477372219.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite563715411477372219.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite563715411477372219.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite563715411477372219.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite563715411477372219.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite563715411477372219.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite563715411477372219.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite563715411477372219.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite563715411477372219.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite563715411477372219.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite563715411477372219.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite563715411477372219.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite563715411477372219.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite563715411477372219.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6721263630426651611.gtf
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6721263630426651611.gtf/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6721263630426651611.gtf/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6721263630426651611.gtf/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6721263630426651611.gtf/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6721263630426651611.gtf/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6721263630426651611.gtf/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6721263630426651611.gtf/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6721263630426651611.gtf/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6721263630426651611.gtf/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6721263630426651611.gtf/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9094193480742228861.sam
/tmp/adamTestMvnnKuH0eo/TempSuite9094193480742228861.sam/part-r-00000.sam
/tmp/adamTestMvnnKuH0eo/TempSuite9094193480742228861.sam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9094193480742228861.sam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite9094193480742228861.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7832071374515917706
/tmp/adamTestMvnnKuH0eo/TempSuite6151284774004937904
/tmp/adamTestMvnnKuH0eo/TempSuite939207791801915025.adam
/tmp/adamTestMvnnKuH0eo/TempSuite939207791801915025.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite939207791801915025.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite939207791801915025.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite939207791801915025.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite939207791801915025.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite939207791801915025.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite939207791801915025.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite939207791801915025.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite939207791801915025.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite939207791801915025.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite939207791801915025.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite939207791801915025.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite939207791801915025.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite939207791801915025.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite670421001719834347
/tmp/adamTestMvnnKuH0eo/TempSuite7828636206890644376.adam
/tmp/adamTestMvnnKuH0eo/TempSuite7828636206890644376.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7828636206890644376.adam/.part-00000-568b6565-31d0-4981-be61-af0d98947aaf-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7828636206890644376.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7828636206890644376.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7828636206890644376.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7828636206890644376.adam/part-00000-568b6565-31d0-4981-be61-af0d98947aaf-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite648490638736477612
/tmp/adamTestMvnnKuH0eo/1603159666841-0
/tmp/adamTestMvnnKuH0eo/1603159666841-0/test_single.vcf
/tmp/adamTestMvnnKuH0eo/1603159666841-0/test.vcf
/tmp/adamTestMvnnKuH0eo/1603159666841-0/test.vcf/.part-r-00000.crc
/tmp/adamTestMvnnKuH0eo/1603159666841-0/test.vcf/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/1603159666841-0/test.vcf/_SUCCESS
/tmp/adamTestMvnnKuH0eo/1603159666841-0/test.vcf/part-r-00000
/tmp/adamTestMvnnKuH0eo/1603159666841-0/.test_single.vcf.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4046534049781642970
/tmp/adamTestMvnnKuH0eo/TempSuite3934161328762026387
/tmp/adamTestMvnnKuH0eo/TempSuite8294089334239126222
/tmp/adamTestMvnnKuH0eo/TempSuite1223757507485863421
/tmp/adamTestMvnnKuH0eo/TempSuite9102808236287043843.adam
/tmp/adamTestMvnnKuH0eo/TempSuite9102808236287043843.adam/.part-00002-b2689b1b-f7fd-4549-9a54-638623c31c41-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9102808236287043843.adam/part-00002-b2689b1b-f7fd-4549-9a54-638623c31c41-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite9102808236287043843.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9102808236287043843.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9102808236287043843.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9102808236287043843.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite9102808236287043843.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9102808236287043843.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite9102808236287043843.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite9102808236287043843.adam/part-00000-b2689b1b-f7fd-4549-9a54-638623c31c41-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite9102808236287043843.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite9102808236287043843.adam/.part-00001-b2689b1b-f7fd-4549-9a54-638623c31c41-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9102808236287043843.adam/part-00001-b2689b1b-f7fd-4549-9a54-638623c31c41-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite9102808236287043843.adam/.part-00000-b2689b1b-f7fd-4549-9a54-638623c31c41-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5370960128663641549.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5370960128663641549.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5370960128663641549.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5370960128663641549.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5370960128663641549.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5370960128663641549.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5370960128663641549.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5370960128663641549.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5370960128663641549.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5370960128663641549.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5370960128663641549.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5370960128663641549.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite5370960128663641549.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6637540438875381705
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite1614790695275433066.fasta
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite832606033209426360.adam
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite832606033209426360.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite832606033209426360.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite832606033209426360.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite832606033209426360.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite832606033209426360.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite832606033209426360.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite832606033209426360.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite832606033209426360.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite832606033209426360.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite832606033209426360.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite832606033209426360.adam/_metadata
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite832606033209426360.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite832606033209426360.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite832606033209426360.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite832606033209426360.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite832606033209426360.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8099077568075992548.sam
/tmp/adamTestMvnnKuH0eo/TempSuite8099077568075992548.sam/part-r-00000.sam
/tmp/adamTestMvnnKuH0eo/TempSuite8099077568075992548.sam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8099077568075992548.sam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8099077568075992548.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1922007312168517755
/tmp/adamTestMvnnKuH0eo/TempSuite7003352720723213323.adam
/tmp/adamTestMvnnKuH0eo/TempSuite7003352720723213323.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7003352720723213323.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7003352720723213323.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7003352720723213323.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7003352720723213323.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7003352720723213323.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7003352720723213323.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7003352720723213323.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7003352720723213323.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7003352720723213323.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7003352720723213323.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7003352720723213323.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7003352720723213323.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite7003352720723213323.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6142744871727079738.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6142744871727079738.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6142744871727079738.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6142744871727079738.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6142744871727079738.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6142744871727079738.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6142744871727079738.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6142744871727079738.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6142744871727079738.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6142744871727079738.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6142744871727079738.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite6142744871727079738.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6142744871727079738.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6142744871727079738.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite6142744871727079738.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite300942143338037594.adam
/tmp/adamTestMvnnKuH0eo/TempSuite300942143338037594.adam/.part-00001-fdfd2129-c922-48c5-a84c-7549a3c53c31-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite300942143338037594.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite300942143338037594.adam/part-00002-fdfd2129-c922-48c5-a84c-7549a3c53c31-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite300942143338037594.adam/part-00000-fdfd2129-c922-48c5-a84c-7549a3c53c31-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite300942143338037594.adam/.part-00002-fdfd2129-c922-48c5-a84c-7549a3c53c31-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite300942143338037594.adam/part-00001-fdfd2129-c922-48c5-a84c-7549a3c53c31-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite300942143338037594.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite300942143338037594.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite300942143338037594.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite300942143338037594.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite300942143338037594.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite300942143338037594.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite300942143338037594.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite300942143338037594.adam/.part-00000-fdfd2129-c922-48c5-a84c-7549a3c53c31-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4453773617231182422
/tmp/adamTestMvnnKuH0eo/TempSuite1442268602598459252
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4615726516264585440.adam
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4615726516264585440.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4615726516264585440.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4615726516264585440.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4615726516264585440.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4615726516264585440.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4615726516264585440.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4615726516264585440.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4615726516264585440.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4615726516264585440.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4615726516264585440.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4615726516264585440.adam/_metadata
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4615726516264585440.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4615726516264585440.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4615726516264585440.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4615726516264585440.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4615726516264585440.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6476693302346856776
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7495320259793044692.bed
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7495320259793044692.bed/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7495320259793044692.bed/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7495320259793044692.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7495320259793044692.bed/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7495320259793044692.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7495320259793044692.bed/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7495320259793044692.bed/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7495320259793044692.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7495320259793044692.bed/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7495320259793044692.bed/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/javaAC4078090152011475196
/tmp/adamTestMvnnKuH0eo/javaAC4078090152011475196/testRdd.sequences.adam
/tmp/adamTestMvnnKuH0eo/javaAC4078090152011475196/testRdd.sequences.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC4078090152011475196/testRdd.sequences.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/javaAC4078090152011475196/testRdd.sequences.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC4078090152011475196/testRdd.sequences.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/javaAC4078090152011475196/testRdd.sequences.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC4078090152011475196/testRdd.sequences.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/javaAC4078090152011475196/testRdd.sequences.adam/_metadata
/tmp/adamTestMvnnKuH0eo/javaAC4078090152011475196/testRdd.sequences.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/javaAC4078090152011475196/testRdd.sequences.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/javaAC4078090152011475196/testRdd.sequences.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/sample_coverage.bed7891679011164027912.bed
/tmp/adamTestMvnnKuH0eo/TempSuite4540111837171307403.bed
/tmp/adamTestMvnnKuH0eo/TempSuite4540111837171307403.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4540111837171307403.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4540111837171307403.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite4540111837171307403.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2292229675524576276.bed
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2292229675524576276.bed/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2292229675524576276.bed/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2292229675524576276.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2292229675524576276.bed/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2292229675524576276.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2292229675524576276.bed/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2292229675524576276.bed/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2292229675524576276.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2292229675524576276.bed/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2292229675524576276.bed/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/referenceName=13
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/referenceName=13/positionBin=0/part-00000-76f78e33-3b6f-4c9d-9100-96948d7e71bb.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/referenceName=13/positionBin=0/.part-00000-76f78e33-3b6f-4c9d-9100-96948d7e71bb.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/referenceName=2
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/referenceName=2/positionBin=0/part-00000-76f78e33-3b6f-4c9d-9100-96948d7e71bb.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/referenceName=2/positionBin=0/.part-00000-76f78e33-3b6f-4c9d-9100-96948d7e71bb.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/referenceName=1
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/referenceName=1/positionBin=0/part-00000-76f78e33-3b6f-4c9d-9100-96948d7e71bb.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/referenceName=1/positionBin=0/.part-00000-76f78e33-3b6f-4c9d-9100-96948d7e71bb.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite1838113772477529034.adam/_partitionedByStartPos
/tmp/adamTestMvnnKuH0eo/TempSuite9102808236287043843
/tmp/adamTestMvnnKuH0eo/TempSuite9060277099709692562.adam
/tmp/adamTestMvnnKuH0eo/TempSuite9060277099709692562.adam/.part-00002-7a4156bd-808c-40b6-bb1c-fd4f50c2b24b-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9060277099709692562.adam/.part-00001-7a4156bd-808c-40b6-bb1c-fd4f50c2b24b-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9060277099709692562.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9060277099709692562.adam/part-00000-7a4156bd-808c-40b6-bb1c-fd4f50c2b24b-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite9060277099709692562.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9060277099709692562.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9060277099709692562.adam/part-00002-7a4156bd-808c-40b6-bb1c-fd4f50c2b24b-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite9060277099709692562.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite9060277099709692562.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9060277099709692562.adam/.part-00000-7a4156bd-808c-40b6-bb1c-fd4f50c2b24b-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9060277099709692562.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite9060277099709692562.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite9060277099709692562.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite9060277099709692562.adam/part-00001-7a4156bd-808c-40b6-bb1c-fd4f50c2b24b-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6000420507374627883.bed
/tmp/adamTestMvnnKuH0eo/TempSuite6000420507374627883.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6000420507374627883.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6000420507374627883.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite6000420507374627883.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6668736169866494401
/tmp/adamTestMvnnKuH0eo/TempSuite6884789922828964649.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6884789922828964649.adam/.part-00002-7f6ab2c8-3614-4468-af2d-2b345c511f3f-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6884789922828964649.adam/part-00002-7f6ab2c8-3614-4468-af2d-2b345c511f3f-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6884789922828964649.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6884789922828964649.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6884789922828964649.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6884789922828964649.adam/.part-00001-7f6ab2c8-3614-4468-af2d-2b345c511f3f-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6884789922828964649.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6884789922828964649.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6884789922828964649.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6884789922828964649.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6884789922828964649.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6884789922828964649.adam/part-00000-7f6ab2c8-3614-4468-af2d-2b345c511f3f-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6884789922828964649.adam/.part-00000-7f6ab2c8-3614-4468-af2d-2b345c511f3f-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6884789922828964649.adam/part-00001-7f6ab2c8-3614-4468-af2d-2b345c511f3f-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8045127988944412048
/tmp/adamTestMvnnKuH0eo/javaAC8718159910584503938
/tmp/adamTestMvnnKuH0eo/javaAC8718159910584503938/testRdd.variant.adam
/tmp/adamTestMvnnKuH0eo/javaAC8718159910584503938/testRdd.variant.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC8718159910584503938/testRdd.variant.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/javaAC8718159910584503938/testRdd.variant.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC8718159910584503938/testRdd.variant.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/javaAC8718159910584503938/testRdd.variant.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/javaAC8718159910584503938/testRdd.variant.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC8718159910584503938/testRdd.variant.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/javaAC8718159910584503938/testRdd.variant.adam/_metadata
/tmp/adamTestMvnnKuH0eo/javaAC8718159910584503938/testRdd.variant.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/javaAC8718159910584503938/testRdd.variant.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/javaAC8718159910584503938/testRdd.variant.adam/_header
/tmp/adamTestMvnnKuH0eo/javaAC8718159910584503938/testRdd.variant.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7398868761609105242.adam
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7398868761609105242.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7398868761609105242.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7398868761609105242.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7398868761609105242.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7398868761609105242.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7398868761609105242.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7398868761609105242.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7398868761609105242.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7398868761609105242.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7398868761609105242.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7398868761609105242.adam/_metadata
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7398868761609105242.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7398868761609105242.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7398868761609105242.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7398868761609105242.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite7398868761609105242.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8272961407288036547
/tmp/adamTestMvnnKuH0eo/TempSuite6096434743600013365.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6096434743600013365.adam/part-00003-b11593b5-f159-4552-8be8-82042c17a830-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6096434743600013365.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6096434743600013365.adam/.part-00003-b11593b5-f159-4552-8be8-82042c17a830-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6096434743600013365.adam/.part-00005-b11593b5-f159-4552-8be8-82042c17a830-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6096434743600013365.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6096434743600013365.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6096434743600013365.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6096434743600013365.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6096434743600013365.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6096434743600013365.adam/part-00000-b11593b5-f159-4552-8be8-82042c17a830-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6096434743600013365.adam/part-00005-b11593b5-f159-4552-8be8-82042c17a830-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6096434743600013365.adam/.part-00000-b11593b5-f159-4552-8be8-82042c17a830-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite6851115267005978225
/tmp/adamTestMvnnKuH0eo/TempSuite8318085388922892968.adam
/tmp/adamTestMvnnKuH0eo/TempSuite8318085388922892968.adam/part-00000-30868382-82ce-47d0-b25e-01e020d1cad0-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8318085388922892968.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8318085388922892968.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8318085388922892968.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8318085388922892968.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8318085388922892968.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8318085388922892968.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8318085388922892968.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8318085388922892968.adam/.part-00000-30868382-82ce-47d0-b25e-01e020d1cad0-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8318085388922892968.adam/_header
/tmp/adamTestMvnnKuH0eo/random.vcf5868922575967447252.vcf
/tmp/adamTestMvnnKuH0eo/2216955637970175920
/tmp/adamTestMvnnKuH0eo/2216955637970175920/predicate.3.adam
/tmp/adamTestMvnnKuH0eo/2216955637970175920/predicate.3.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/2216955637970175920/predicate.3.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/2216955637970175920/predicate.3.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/2216955637970175920/predicate.3.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/2216955637970175920/predicate.3.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/2216955637970175920/predicate.3.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/2216955637970175920/predicate.3.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/2216955637970175920/predicate.3.adam/_metadata
/tmp/adamTestMvnnKuH0eo/2216955637970175920/predicate.3.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/2216955637970175920/predicate.3.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/2216955637970175920/predicate.3.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/2216955637970175920/predicate.3.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/2216955637970175920/predicate.3.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/2216955637970175920/predicate.3.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/_partitionMap.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/._partitionMap.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7874134355278732159.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3351482255256938598.gff3
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3351482255256938598.gff3/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3351482255256938598.gff3/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3351482255256938598.gff3/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3351482255256938598.gff3/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3351482255256938598.gff3/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3351482255256938598.gff3/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3351482255256938598.gff3/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3351482255256938598.gff3/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3351482255256938598.gff3/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3351482255256938598.gff3/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5083371713315555804.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5083371713315555804.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5083371713315555804.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5083371713315555804.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5083371713315555804.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5083371713315555804.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5083371713315555804.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5083371713315555804.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5083371713315555804.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5083371713315555804.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5083371713315555804.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5083371713315555804.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5083371713315555804.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5083371713315555804.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5083371713315555804.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5083371713315555804.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5083371713315555804.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3772581160644662675.bed
/tmp/adamTestMvnnKuH0eo/TempSuite3772581160644662675.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3772581160644662675.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3772581160644662675.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite3772581160644662675.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1202435914540179808
/tmp/adamTestMvnnKuH0eo/TempSuite3925835553749926688.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3925835553749926688.adam/.part-00000-e2ff5b0e-946b-4550-91ed-f2671d6d47cd-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3925835553749926688.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3925835553749926688.adam/part-00000-e2ff5b0e-946b-4550-91ed-f2671d6d47cd-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3925835553749926688.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3925835553749926688.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3925835553749926688.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3925835553749926688.adam/.part-00001-e2ff5b0e-946b-4550-91ed-f2671d6d47cd-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3925835553749926688.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3925835553749926688.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3925835553749926688.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3925835553749926688.adam/part-00001-e2ff5b0e-946b-4550-91ed-f2671d6d47cd-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3925835553749926688.adam/.part-00002-e2ff5b0e-946b-4550-91ed-f2671d6d47cd-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3925835553749926688.adam/part-00002-e2ff5b0e-946b-4550-91ed-f2671d6d47cd-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3925835553749926688.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite5318008916700317096.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5318008916700317096.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5318008916700317096.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5318008916700317096.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5318008916700317096.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5318008916700317096.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5318008916700317096.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5318008916700317096.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5318008916700317096.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5318008916700317096.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5318008916700317096.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5318008916700317096.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5318008916700317096.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5318008916700317096.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5318008916700317096.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7765010778891873652
/tmp/adamTestMvnnKuH0eo/TempSuite1239532241407419501.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1239532241407419501.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1239532241407419501.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1239532241407419501.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1239532241407419501.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1239532241407419501.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1239532241407419501.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1239532241407419501.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1239532241407419501.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1239532241407419501.adam/referenceName=1
/tmp/adamTestMvnnKuH0eo/TempSuite1239532241407419501.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnnKuH0eo/TempSuite1239532241407419501.adam/referenceName=1/positionBin=0/.part-00000-72f961f0-266c-4997-b2ca-3a1ac28f61fe.c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1239532241407419501.adam/referenceName=1/positionBin=0/part-00000-72f961f0-266c-4997-b2ca-3a1ac28f61fe.c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1239532241407419501.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite1239532241407419501.adam/_partitionedByStartPos
/tmp/adamTestMvnnKuH0eo/TempSuite8792421997010044436.fq
/tmp/adamTestMvnnKuH0eo/TempSuite8792421997010044436.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8792421997010044436.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8792421997010044436.fq/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite8792421997010044436.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3787467138993705791.gff3
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3787467138993705791.gff3/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3787467138993705791.gff3/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3787467138993705791.gff3/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3787467138993705791.gff3/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3787467138993705791.gff3/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3787467138993705791.gff3/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3787467138993705791.gff3/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3787467138993705791.gff3/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3787467138993705791.gff3/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3787467138993705791.gff3/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/.FeatureDatasetFunctionsSuite361031587486091194.bed.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite350424275408834623.adam
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite350424275408834623.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite350424275408834623.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite350424275408834623.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite350424275408834623.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite350424275408834623.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite350424275408834623.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite350424275408834623.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite350424275408834623.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite350424275408834623.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite350424275408834623.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite350424275408834623.adam/_metadata
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite350424275408834623.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite350424275408834623.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite350424275408834623.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite350424275408834623.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite350424275408834623.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2895827570834504877
/tmp/adamTestMvnnKuH0eo/TempSuite7891193604591542546
/tmp/adamTestMvnnKuH0eo/TempSuite7487376601889676998.adam
/tmp/adamTestMvnnKuH0eo/TempSuite7487376601889676998.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7487376601889676998.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7487376601889676998.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7487376601889676998.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7487376601889676998.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7487376601889676998.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7487376601889676998.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7487376601889676998.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7487376601889676998.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite7487376601889676998.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7487376601889676998.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7487376601889676998.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7487376601889676998.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7487376601889676998.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite7487376601889676998.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7487376601889676998.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite7487376601889676998.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite7487376601889676998.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3135070745130621201.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3135070745130621201.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3135070745130621201.adam/.part-00000-7ef4ef91-661d-4b82-8f6e-9db19ed9f695-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3135070745130621201.adam/part-00000-7ef4ef91-661d-4b82-8f6e-9db19ed9f695-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3135070745130621201.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3135070745130621201.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3135070745130621201.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3135070745130621201.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3135070745130621201.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite2767017422881983428
/tmp/adamTestMvnnKuH0eo/TempSuite2013419507736276772.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2013419507736276772.adam/.part-00001-305bf7c9-50de-45b7-bf8d-977364766bc6-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2013419507736276772.adam/part-00002-305bf7c9-50de-45b7-bf8d-977364766bc6-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2013419507736276772.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2013419507736276772.adam/.part-00002-305bf7c9-50de-45b7-bf8d-977364766bc6-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2013419507736276772.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2013419507736276772.adam/.part-00000-305bf7c9-50de-45b7-bf8d-977364766bc6-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2013419507736276772.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2013419507736276772.adam/part-00000-305bf7c9-50de-45b7-bf8d-977364766bc6-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2013419507736276772.adam/part-00001-305bf7c9-50de-45b7-bf8d-977364766bc6-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2013419507736276772.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite106207825968877718.bed
/tmp/adamTestMvnnKuH0eo/TempSuite106207825968877718.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite106207825968877718.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite106207825968877718.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite106207825968877718.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/unordered.sam2598539056043814966.sam
/tmp/adamTestMvnnKuH0eo/TempSuite1805323908465545563
/tmp/adamTestMvnnKuH0eo/.ReadDatasetSuite5336378309727263464.fastq.crc
/tmp/adamTestMvnnKuH0eo/unordered.sam7225322192899410438.sam
/tmp/adamTestMvnnKuH0eo/TempSuite4414374350110663762.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4414374350110663762.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4414374350110663762.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4414374350110663762.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4414374350110663762.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4414374350110663762.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4414374350110663762.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4414374350110663762.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4414374350110663762.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4414374350110663762.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4414374350110663762.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4414374350110663762.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4414374350110663762.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4414374350110663762.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite4414374350110663762.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7230831958564751260
/tmp/adamTestMvnnKuH0eo/random.vcf1457069499848963163.vcf
/tmp/adamTestMvnnKuH0eo/6202246972773612040
/tmp/adamTestMvnnKuH0eo/6202246972773612040/.artificial.cram.crc
/tmp/adamTestMvnnKuH0eo/6202246972773612040/artificial.cram
/tmp/adamTestMvnnKuH0eo/TempSuite2760544743070836806
/tmp/adamTestMvnnKuH0eo/1246153641408812007
/tmp/adamTestMvnnKuH0eo/1246153641408812007/out.sam_head
/tmp/adamTestMvnnKuH0eo/1246153641408812007/.out.sam_head.crc
/tmp/adamTestMvnnKuH0eo/1246153641408812007/out.sam_tail
/tmp/adamTestMvnnKuH0eo/1246153641408812007/out.sam_tail/part-r-00002.sam
/tmp/adamTestMvnnKuH0eo/1246153641408812007/out.sam_tail/part-r-00000.sam
/tmp/adamTestMvnnKuH0eo/1246153641408812007/out.sam_tail/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/1246153641408812007/out.sam_tail/_SUCCESS
/tmp/adamTestMvnnKuH0eo/1246153641408812007/out.sam_tail/.part-r-00000.sam.crc
/tmp/adamTestMvnnKuH0eo/1246153641408812007/out.sam_tail/part-r-00003.sam
/tmp/adamTestMvnnKuH0eo/1246153641408812007/out.sam_tail/.part-r-00002.sam.crc
/tmp/adamTestMvnnKuH0eo/1246153641408812007/out.sam_tail/.part-r-00001.sam.crc
/tmp/adamTestMvnnKuH0eo/1246153641408812007/out.sam_tail/part-r-00001.sam
/tmp/adamTestMvnnKuH0eo/1246153641408812007/out.sam_tail/.part-r-00003.sam.crc
/tmp/adamTestMvnnKuH0eo/1246153641408812007/.out.sam.crc
/tmp/adamTestMvnnKuH0eo/1246153641408812007/out.sam
/tmp/adamTestMvnnKuH0eo/TempSuite8170652468549241801.fq
/tmp/adamTestMvnnKuH0eo/TempSuite8170652468549241801.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8170652468549241801.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8170652468549241801.fq/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite8170652468549241801.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4413412390744441017
/tmp/adamTestMvnnKuH0eo/TempSuite5268507494544841546.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5268507494544841546.adam/part-00000-f7300a46-5ca0-4246-8032-73aab2928084-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5268507494544841546.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5268507494544841546.adam/part-00001-f7300a46-5ca0-4246-8032-73aab2928084-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5268507494544841546.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5268507494544841546.adam/.part-00001-f7300a46-5ca0-4246-8032-73aab2928084-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5268507494544841546.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5268507494544841546.adam/.part-00002-f7300a46-5ca0-4246-8032-73aab2928084-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5268507494544841546.adam/part-00002-f7300a46-5ca0-4246-8032-73aab2928084-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5268507494544841546.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5268507494544841546.adam/.part-00000-f7300a46-5ca0-4246-8032-73aab2928084-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite648490638736477612.fq
/tmp/adamTestMvnnKuH0eo/TempSuite648490638736477612.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite648490638736477612.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite648490638736477612.fq/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite648490638736477612.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/unordered.sam8768408070909620005.sam
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8747905173167602984.narrowPeak
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8747905173167602984.narrowPeak/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8747905173167602984.narrowPeak/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8747905173167602984.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8747905173167602984.narrowPeak/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8747905173167602984.narrowPeak/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8747905173167602984.narrowPeak/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8747905173167602984.narrowPeak/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8747905173167602984.narrowPeak/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8747905173167602984.narrowPeak/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8747905173167602984.narrowPeak/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8099077568075992548
/tmp/adamTestMvnnKuH0eo/6115857771277926212
/tmp/adamTestMvnnKuH0eo/6115857771277926212/sorted.vcf
/tmp/adamTestMvnnKuH0eo/6115857771277926212/.sorted.vcf.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5801114325384718355.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3261751429252183220.adam
/tmp/adamTestMvnnKuH0eo/TempSuite3261751429252183220.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite3261751429252183220.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3261751429252183220.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3261751429252183220.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3261751429252183220.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3261751429252183220.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite3261751429252183220.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3261751429252183220.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite3261751429252183220.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite3261751429252183220.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4035898249649448434
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite5358140846595731447
/tmp/adamTestMvnnKuH0eo/small.sam3273451393760822948.sam
/tmp/adamTestMvnnKuH0eo/TempSuite5029331543860580857.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5029331543860580857.adam/.part-00000-0c18b142-febb-4c2c-a733-93d41a3970ea-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5029331543860580857.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5029331543860580857.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5029331543860580857.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5029331543860580857.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5029331543860580857.adam/part-00000-0c18b142-febb-4c2c-a733-93d41a3970ea-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5029331543860580857.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5029331543860580857.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite4720774719809031581
/tmp/adamTestMvnnKuH0eo/TempSuite6832983300282864920
/tmp/adamTestMvnnKuH0eo/6181177825291331055
/tmp/adamTestMvnnKuH0eo/6181177825291331055/.readname_sorted.sam.crc
/tmp/adamTestMvnnKuH0eo/6181177825291331055/readname_sorted.sam
/tmp/adamTestMvnnKuH0eo/TempSuite3376022435694819056
/tmp/adamTestMvnnKuH0eo/TempSuite7863201161729774802
/tmp/adamTestMvnnKuH0eo/TempSuite5268507494544841546
/tmp/adamTestMvnnKuH0eo/TempSuite1122840295291439064.sam
/tmp/adamTestMvnnKuH0eo/TempSuite1122840295291439064.sam/part-r-00000.sam
/tmp/adamTestMvnnKuH0eo/TempSuite1122840295291439064.sam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1122840295291439064.sam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1122840295291439064.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8649376503515120276
/tmp/adamTestMvnnKuH0eo/TempSuite5095504494294472918.bed
/tmp/adamTestMvnnKuH0eo/TempSuite5095504494294472918.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5095504494294472918.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5095504494294472918.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite5095504494294472918.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4774460287384491247
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite926776874042234127
/tmp/adamTestMvnnKuH0eo/.TempSuite3873077472301708764.sam.crc
/tmp/adamTestMvnnKuH0eo/8826497156060612724
/tmp/adamTestMvnnKuH0eo/8826497156060612724/bqsr1.vcf.bgz
/tmp/adamTestMvnnKuH0eo/8826497156060612724/bqsr1.vcf.bgz/.part-r-00000.bgz.crc
/tmp/adamTestMvnnKuH0eo/8826497156060612724/bqsr1.vcf.bgz/.part-r-00003.bgz.crc
/tmp/adamTestMvnnKuH0eo/8826497156060612724/bqsr1.vcf.bgz/part-r-00000.bgz
/tmp/adamTestMvnnKuH0eo/8826497156060612724/bqsr1.vcf.bgz/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/8826497156060612724/bqsr1.vcf.bgz/.part-r-00001.bgz.crc
/tmp/adamTestMvnnKuH0eo/8826497156060612724/bqsr1.vcf.bgz/_SUCCESS
/tmp/adamTestMvnnKuH0eo/8826497156060612724/bqsr1.vcf.bgz/part-r-00001.bgz
/tmp/adamTestMvnnKuH0eo/8826497156060612724/bqsr1.vcf.bgz/part-r-00003.bgz
/tmp/adamTestMvnnKuH0eo/8826497156060612724/bqsr1.vcf.bgz/part-r-00002.bgz
/tmp/adamTestMvnnKuH0eo/8826497156060612724/bqsr1.vcf.bgz/.part-r-00002.bgz.crc
/tmp/adamTestMvnnKuH0eo/.SequenceDatasetSuite6242260054760183211.fasta.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2324171641532245141.narrowPeak
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2324171641532245141.narrowPeak/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2324171641532245141.narrowPeak/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2324171641532245141.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2324171641532245141.narrowPeak/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2324171641532245141.narrowPeak/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2324171641532245141.narrowPeak/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2324171641532245141.narrowPeak/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2324171641532245141.narrowPeak/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2324171641532245141.narrowPeak/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2324171641532245141.narrowPeak/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/.FeatureDatasetFunctionsSuite6407623124869574117.bed.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7453058419290102611.fq
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6002549116949682811.gff3
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6002549116949682811.gff3/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6002549116949682811.gff3/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6002549116949682811.gff3/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6002549116949682811.gff3/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6002549116949682811.gff3/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6002549116949682811.gff3/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6002549116949682811.gff3/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6002549116949682811.gff3/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6002549116949682811.gff3/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6002549116949682811.gff3/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5228396246606315258
/tmp/adamTestMvnnKuH0eo/TempSuite3929479931011394677
/tmp/adamTestMvnnKuH0eo/TempSuite4506244067570844092.sam
/tmp/adamTestMvnnKuH0eo/TempSuite4506244067570844092.sam/part-r-00000.sam
/tmp/adamTestMvnnKuH0eo/TempSuite4506244067570844092.sam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4506244067570844092.sam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4506244067570844092.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnnKuH0eo/javaAC1295539890412526153
/tmp/adamTestMvnnKuH0eo/javaAC1295539890412526153/testRdd.slices.adam
/tmp/adamTestMvnnKuH0eo/javaAC1295539890412526153/testRdd.slices.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/javaAC1295539890412526153/testRdd.slices.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/javaAC1295539890412526153/testRdd.slices.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/javaAC1295539890412526153/testRdd.slices.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/javaAC1295539890412526153/testRdd.slices.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/javaAC1295539890412526153/testRdd.slices.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/javaAC1295539890412526153/testRdd.slices.adam/_metadata
/tmp/adamTestMvnnKuH0eo/javaAC1295539890412526153/testRdd.slices.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/javaAC1295539890412526153/testRdd.slices.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/javaAC1295539890412526153/testRdd.slices.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6688137431183978022.adam
/tmp/adamTestMvnnKuH0eo/TempSuite6688137431183978022.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6688137431183978022.adam/part-00001-012b4c2d-1ea6-4486-a0f5-0bbfc463a09c-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6688137431183978022.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6688137431183978022.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6688137431183978022.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6688137431183978022.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6688137431183978022.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6688137431183978022.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6688137431183978022.adam/.part-00000-012b4c2d-1ea6-4486-a0f5-0bbfc463a09c-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6688137431183978022.adam/part-00002-012b4c2d-1ea6-4486-a0f5-0bbfc463a09c-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6688137431183978022.adam/.part-00001-012b4c2d-1ea6-4486-a0f5-0bbfc463a09c-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6688137431183978022.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite6688137431183978022.adam/part-00000-012b4c2d-1ea6-4486-a0f5-0bbfc463a09c-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite6688137431183978022.adam/.part-00002-012b4c2d-1ea6-4486-a0f5-0bbfc463a09c-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1526881751412976407.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1526881751412976407.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1526881751412976407.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1526881751412976407.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1526881751412976407.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1526881751412976407.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1526881751412976407.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1526881751412976407.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1526881751412976407.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1526881751412976407.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1526881751412976407.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1526881751412976407.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1526881751412976407.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1526881751412976407.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1526881751412976407.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1526881751412976407.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1526881751412976407.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/4288631192526857688
/tmp/adamTestMvnnKuH0eo/4288631192526857688/variants.adam
/tmp/adamTestMvnnKuH0eo/4288631192526857688/variants.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/4288631192526857688/variants.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/4288631192526857688/variants.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/4288631192526857688/variants.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/4288631192526857688/variants.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/4288631192526857688/variants.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/4288631192526857688/variants.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/4288631192526857688/variants.adam/_metadata
/tmp/adamTestMvnnKuH0eo/4288631192526857688/variants.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/4288631192526857688/variants.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/4288631192526857688/variants.adam/_header
/tmp/adamTestMvnnKuH0eo/4288631192526857688/variants.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/.SequenceDatasetSuite5130783785638254886.fasta.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5685156677629627344
/tmp/adamTestMvnnKuH0eo/TempSuite5322648132616263582
/tmp/adamTestMvnnKuH0eo/TempSuite8222525738887766622.bed
/tmp/adamTestMvnnKuH0eo/TempSuite8222525738887766622.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8222525738887766622.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8222525738887766622.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite8222525738887766622.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5530840477427609717
/tmp/adamTestMvnnKuH0eo/TempSuite8936794692634876819
/tmp/adamTestMvnnKuH0eo/.TempSuite1351295538267088067_2.fq.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5744721922079427085.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5744721922079427085.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5744721922079427085.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5744721922079427085.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5744721922079427085.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5744721922079427085.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5744721922079427085.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5744721922079427085.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5744721922079427085.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5744721922079427085.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5744721922079427085.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5744721922079427085.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5744721922079427085.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5744721922079427085.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite5744721922079427085.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6598951405047101794.interval_list
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6598951405047101794.interval_list/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6598951405047101794.interval_list/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6598951405047101794.interval_list/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6598951405047101794.interval_list/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6598951405047101794.interval_list/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6598951405047101794.interval_list/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6598951405047101794.interval_list/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6598951405047101794.interval_list/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6598951405047101794.interval_list/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite6598951405047101794.interval_list/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/4545477966988709041
/tmp/adamTestMvnnKuH0eo/4545477966988709041/unordered.sam
/tmp/adamTestMvnnKuH0eo/4545477966988709041/.unordered.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5866917165840147924.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5866917165840147924.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5866917165840147924.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5866917165840147924.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5866917165840147924.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5866917165840147924.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5866917165840147924.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5866917165840147924.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5866917165840147924.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5866917165840147924.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5866917165840147924.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite5866917165840147924.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5866917165840147924.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5866917165840147924.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5866917165840147924.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/2537172068955847559
/tmp/adamTestMvnnKuH0eo/2537172068955847559/.ordered.sam.crc
/tmp/adamTestMvnnKuH0eo/2537172068955847559/ordered.sam
/tmp/adamTestMvnnKuH0eo/TempSuite1672436022340736684
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite832606033209426360
/tmp/adamTestMvnnKuH0eo/TempSuite4237731373083361276
/tmp/adamTestMvnnKuH0eo/TempSuite2315572920716594320.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2315572920716594320.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2315572920716594320.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2315572920716594320.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2315572920716594320.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2315572920716594320.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2315572920716594320.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2315572920716594320.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2315572920716594320.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2315572920716594320.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2315572920716594320.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite329094831285933162.sam
/tmp/adamTestMvnnKuH0eo/TempSuite329094831285933162.sam/part-r-00000.sam
/tmp/adamTestMvnnKuH0eo/TempSuite329094831285933162.sam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite329094831285933162.sam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite329094831285933162.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6578366703490721978
/tmp/adamTestMvnnKuH0eo/TempSuite4450862564142708969
/tmp/adamTestMvnnKuH0eo/TempSuite3707640323980875476
/tmp/adamTestMvnnKuH0eo/795361410460383221
/tmp/adamTestMvnnKuH0eo/795361410460383221/.ordered.sam.crc
/tmp/adamTestMvnnKuH0eo/795361410460383221/ordered.sam
/tmp/adamTestMvnnKuH0eo/TempSuite9018898104598869912
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite6522653129138046629.fasta
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite6522653129138046629.fasta/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite6522653129138046629.fasta/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite6522653129138046629.fasta/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite6522653129138046629.fasta/part-00003
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite6522653129138046629.fasta/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite6522653129138046629.fasta/part-00000
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite6522653129138046629.fasta/part-00002
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite6522653129138046629.fasta/_SUCCESS
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite6522653129138046629.fasta/part-00001
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite6522653129138046629.fasta/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3834934461273967451
/tmp/adamTestMvnnKuH0eo/TempSuite3776005123633352825
/tmp/adamTestMvnnKuH0eo/TempSuite3261751429252183220
/tmp/adamTestMvnnKuH0eo/.TempSuite2791057831890143252.bam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite564119838817864827.adam
/tmp/adamTestMvnnKuH0eo/TempSuite564119838817864827.adam/part-00000-e3ebed55-f468-4ead-9395-f04221f33c69-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite564119838817864827.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite564119838817864827.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite564119838817864827.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite564119838817864827.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite564119838817864827.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite564119838817864827.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite564119838817864827.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite564119838817864827.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite564119838817864827.adam/.part-00000-e3ebed55-f468-4ead-9395-f04221f33c69-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite442106901381728112
/tmp/adamTestMvnnKuH0eo/TempSuite7082938716871491773
/tmp/adamTestMvnnKuH0eo/TempSuite5012580594660856534
/tmp/adamTestMvnnKuH0eo/4995861008172216659
/tmp/adamTestMvnnKuH0eo/4995861008172216659/sorted.sam
/tmp/adamTestMvnnKuH0eo/4995861008172216659/.sorted.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5193233043001836639.vcf
/tmp/adamTestMvnnKuH0eo/TempSuite5193233043001836639.vcf/.part-r-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5193233043001836639.vcf/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5193233043001836639.vcf/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5193233043001836639.vcf/part-r-00000
/tmp/adamTestMvnnKuH0eo/TempSuite917235282161821194
/tmp/adamTestMvnnKuH0eo/unordered.sam8567167239024537280.sam
/tmp/adamTestMvnnKuH0eo/TempSuite13493418576094214
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4653636835696936113.adam
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4653636835696936113.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4653636835696936113.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4653636835696936113.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4653636835696936113.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4653636835696936113.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4653636835696936113.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4653636835696936113.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4653636835696936113.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4653636835696936113.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4653636835696936113.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4653636835696936113.adam/_metadata
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4653636835696936113.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4653636835696936113.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4653636835696936113.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4653636835696936113.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/ReadDatasetSuite4653636835696936113.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9173752096061502719
/tmp/adamTestMvnnKuH0eo/TempSuite8649376503515120276.bed
/tmp/adamTestMvnnKuH0eo/TempSuite8649376503515120276.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8649376503515120276.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8649376503515120276.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite8649376503515120276.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4615726516264585440
/tmp/adamTestMvnnKuH0eo/TempSuite8495364936796331094.adam
/tmp/adamTestMvnnKuH0eo/TempSuite8495364936796331094.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8495364936796331094.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8495364936796331094.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8495364936796331094.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8495364936796331094.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8495364936796331094.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8495364936796331094.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8495364936796331094.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8495364936796331094.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8495364936796331094.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8495364936796331094.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8495364936796331094.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8495364936796331094.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8495364936796331094.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4517609036753500390.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4517609036753500390.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4517609036753500390.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4517609036753500390.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4517609036753500390.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4517609036753500390.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4517609036753500390.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4517609036753500390.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4517609036753500390.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4517609036753500390.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4517609036753500390.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4517609036753500390.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4517609036753500390.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4517609036753500390.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4517609036753500390.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/SequenceDatasetSuite6242260054760183211.fasta
/tmp/adamTestMvnnKuH0eo/TempSuite3560028433771200137
/tmp/adamTestMvnnKuH0eo/TempSuite2945910962280006928
/tmp/adamTestMvnnKuH0eo/TempSuite3813979025285510215
/tmp/adamTestMvnnKuH0eo/TempSuite1927676996524832143
/tmp/adamTestMvnnKuH0eo/.ReadDatasetSuite6467424259481691166.fastq.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4938618116360932418.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4938618116360932418.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4938618116360932418.adam/.part-00000-5f232468-ca08-4d23-8f06-5a385f459988-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4938618116360932418.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4938618116360932418.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4938618116360932418.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4938618116360932418.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4938618116360932418.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4938618116360932418.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4938618116360932418.adam/part-00000-5f232468-ca08-4d23-8f06-5a385f459988-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4938618116360932418.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite7487376601889676998
/tmp/adamTestMvnnKuH0eo/TempSuite2954584364710310039.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2954584364710310039.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2954584364710310039.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2954584364710310039.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2954584364710310039.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2954584364710310039.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2954584364710310039.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2954584364710310039.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2954584364710310039.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2954584364710310039.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2954584364710310039.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2954584364710310039.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2954584364710310039.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2954584364710310039.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2954584364710310039.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4658786333156670285.bed
/tmp/adamTestMvnnKuH0eo/TempSuite4658786333156670285.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4658786333156670285.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4658786333156670285.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite4658786333156670285.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4140969051923294448
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4777774133917139807.gff3
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4777774133917139807.gff3/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4777774133917139807.gff3/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4777774133917139807.gff3/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4777774133917139807.gff3/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4777774133917139807.gff3/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4777774133917139807.gff3/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4777774133917139807.gff3/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4777774133917139807.gff3/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4777774133917139807.gff3/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite4777774133917139807.gff3/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2488567598482666711.adam
/tmp/adamTestMvnnKuH0eo/TempSuite2488567598482666711.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite2488567598482666711.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2488567598482666711.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2488567598482666711.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2488567598482666711.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2488567598482666711.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2488567598482666711.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite2488567598482666711.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2488567598482666711.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2488567598482666711.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite2488567598482666711.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2488567598482666711.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2488567598482666711.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite2488567598482666711.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/7852781121828310106
/tmp/adamTestMvnnKuH0eo/7852781121828310106/predicate.2.adam
/tmp/adamTestMvnnKuH0eo/7852781121828310106/predicate.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/7852781121828310106/predicate.2.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/7852781121828310106/predicate.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/7852781121828310106/predicate.2.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/7852781121828310106/predicate.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/7852781121828310106/predicate.2.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/7852781121828310106/predicate.2.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/7852781121828310106/predicate.2.adam/_metadata
/tmp/adamTestMvnnKuH0eo/7852781121828310106/predicate.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/7852781121828310106/predicate.2.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/7852781121828310106/predicate.2.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/7852781121828310106/predicate.2.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/7852781121828310106/predicate.2.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/7852781121828310106/predicate.2.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7835118467176355289
/tmp/adamTestMvnnKuH0eo/4147305377283745049
/tmp/adamTestMvnnKuH0eo/4147305377283745049/sorted.lex.vcf
/tmp/adamTestMvnnKuH0eo/4147305377283745049/.sorted.lex.vcf.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8657198540460308248
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8865600155452596467.narrowPeak
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8865600155452596467.narrowPeak/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8865600155452596467.narrowPeak/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8865600155452596467.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8865600155452596467.narrowPeak/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8865600155452596467.narrowPeak/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8865600155452596467.narrowPeak/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8865600155452596467.narrowPeak/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8865600155452596467.narrowPeak/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8865600155452596467.narrowPeak/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite8865600155452596467.narrowPeak/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/reads128787877979095224692
/tmp/adamTestMvnnKuH0eo/reads128787877979095224692/reads12.fq
/tmp/adamTestMvnnKuH0eo/reads128787877979095224692/reads12.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/reads128787877979095224692/reads12.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/reads128787877979095224692/reads12.fq/part-00000
/tmp/adamTestMvnnKuH0eo/reads128787877979095224692/reads12.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1903619295640049564
/tmp/adamTestMvnnKuH0eo/TempSuite1199013176938144826.bam
/tmp/adamTestMvnnKuH0eo/TempSuite1626954595837444403
/tmp/adamTestMvnnKuH0eo/5074855247785266271
/tmp/adamTestMvnnKuH0eo/5074855247785266271/out.bam
/tmp/adamTestMvnnKuH0eo/5074855247785266271/out.bam_head
/tmp/adamTestMvnnKuH0eo/5074855247785266271/.out.bam.crc
/tmp/adamTestMvnnKuH0eo/5074855247785266271/out.bam_tail
/tmp/adamTestMvnnKuH0eo/5074855247785266271/out.bam_tail/.part-r-00002.bam.crc
/tmp/adamTestMvnnKuH0eo/5074855247785266271/out.bam_tail/part-r-00002.bam
/tmp/adamTestMvnnKuH0eo/5074855247785266271/out.bam_tail/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/5074855247785266271/out.bam_tail/part-r-00001.bam
/tmp/adamTestMvnnKuH0eo/5074855247785266271/out.bam_tail/_SUCCESS
/tmp/adamTestMvnnKuH0eo/5074855247785266271/out.bam_tail/part-r-00003.bam
/tmp/adamTestMvnnKuH0eo/5074855247785266271/out.bam_tail/.part-r-00003.bam.crc
/tmp/adamTestMvnnKuH0eo/5074855247785266271/out.bam_tail/.part-r-00000.bam.crc
/tmp/adamTestMvnnKuH0eo/5074855247785266271/out.bam_tail/part-r-00000.bam
/tmp/adamTestMvnnKuH0eo/5074855247785266271/out.bam_tail/.part-r-00001.bam.crc
/tmp/adamTestMvnnKuH0eo/5074855247785266271/.out.bam_head.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7402833619761639756
/tmp/adamTestMvnnKuH0eo/TempSuite6668736169866494401.bed
/tmp/adamTestMvnnKuH0eo/TempSuite6668736169866494401.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6668736169866494401.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6668736169866494401.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite6668736169866494401.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5318008916700317096
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite4859097048698575098.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite2390645016125122227
/tmp/adamTestMvnnKuH0eo/.TempSuite1199013176938144826.bam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7965079471583328046
/tmp/adamTestMvnnKuH0eo/small.vcf813781078311697287.vcf
/tmp/adamTestMvnnKuH0eo/TempSuite8395439973552844106.adam
/tmp/adamTestMvnnKuH0eo/TempSuite8395439973552844106.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8395439973552844106.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8395439973552844106.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8395439973552844106.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8395439973552844106.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8395439973552844106.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8395439973552844106.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8395439973552844106.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8395439973552844106.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8395439973552844106.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8395439973552844106.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8395439973552844106.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9173752096061502719.bam
/tmp/adamTestMvnnKuH0eo/TempSuite9173752096061502719.bam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9173752096061502719.bam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite9173752096061502719.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9173752096061502719.bam/part-r-00000.bam
/tmp/adamTestMvnnKuH0eo/TempSuite4450862564142708969.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4450862564142708969.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4450862564142708969.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4450862564142708969.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4450862564142708969.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4450862564142708969.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4450862564142708969.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4450862564142708969.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4450862564142708969.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4450862564142708969.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4450862564142708969.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4450862564142708969.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite4450862564142708969.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite526834135373920298.adam
/tmp/adamTestMvnnKuH0eo/TempSuite526834135373920298.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite526834135373920298.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite526834135373920298.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite526834135373920298.adam/part-00000-ccc9f5b0-5211-41f8-ae46-4b2dfb8c1750-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite526834135373920298.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite526834135373920298.adam/.part-00000-ccc9f5b0-5211-41f8-ae46-4b2dfb8c1750-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite7061926180294255974
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite3579512120566682180
/tmp/adamTestMvnnKuH0eo/TempSuite6411453172633368576
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite433608220316962279
/tmp/adamTestMvnnKuH0eo/TempSuite2241562177828186589
/tmp/adamTestMvnnKuH0eo/2382802522040320947
/tmp/adamTestMvnnKuH0eo/2382802522040320947/variants.adam
/tmp/adamTestMvnnKuH0eo/2382802522040320947/variants.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/2382802522040320947/variants.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/2382802522040320947/variants.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/2382802522040320947/variants.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/2382802522040320947/variants.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/2382802522040320947/variants.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/2382802522040320947/variants.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/2382802522040320947/variants.adam/_metadata
/tmp/adamTestMvnnKuH0eo/2382802522040320947/variants.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/2382802522040320947/variants.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/2382802522040320947/variants.adam/_header
/tmp/adamTestMvnnKuH0eo/2382802522040320947/variants.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2142776786432996726
/tmp/adamTestMvnnKuH0eo/TempSuite6411453172633368576.bed
/tmp/adamTestMvnnKuH0eo/TempSuite6411453172633368576.bed/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6411453172633368576.bed/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6411453172633368576.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6411453172633368576.bed/part-00003
/tmp/adamTestMvnnKuH0eo/TempSuite6411453172633368576.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6411453172633368576.bed/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite6411453172633368576.bed/part-00002
/tmp/adamTestMvnnKuH0eo/TempSuite6411453172633368576.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite6411453172633368576.bed/part-00001
/tmp/adamTestMvnnKuH0eo/TempSuite6411453172633368576.bed/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/sorted-variants.vcf2906787400583230948.vcf
/tmp/adamTestMvnnKuH0eo/trinity.fa1021632354638003210.fa
/tmp/adamTestMvnnKuH0eo/TempSuite1223757507485863421.adam
/tmp/adamTestMvnnKuH0eo/TempSuite1223757507485863421.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1223757507485863421.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1223757507485863421.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1223757507485863421.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1223757507485863421.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1223757507485863421.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1223757507485863421.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1223757507485863421.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1223757507485863421.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1223757507485863421.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite1223757507485863421.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1223757507485863421.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1223757507485863421.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite1223757507485863421.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite1223757507485863421.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite1223757507485863421.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite1223757507485863421.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite1223757507485863421.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/small.vcf7396804221355970500.vcf
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite4816307917735021561
/tmp/adamTestMvnnKuH0eo/TempSuite6960586556883501353
/tmp/adamTestMvnnKuH0eo/5713686173947095217
/tmp/adamTestMvnnKuH0eo/5713686173947095217/.sorted-variants.lex.vcf.crc
/tmp/adamTestMvnnKuH0eo/5713686173947095217/sorted-variants.lex.vcf
/tmp/adamTestMvnnKuH0eo/TempSuite373922380580266139
/tmp/adamTestMvnnKuH0eo/TempSuite3772581160644662675
/tmp/adamTestMvnnKuH0eo/TempSuite5935972348837733739
/tmp/adamTestMvnnKuH0eo/random.vcf4465953693931291019.vcf
/tmp/adamTestMvnnKuH0eo/TempSuite8087988098201285236.adam
/tmp/adamTestMvnnKuH0eo/TempSuite8087988098201285236.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite8087988098201285236.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8087988098201285236.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8087988098201285236.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8087988098201285236.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8087988098201285236.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8087988098201285236.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite8087988098201285236.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8087988098201285236.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite8087988098201285236.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite8087988098201285236.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8087988098201285236.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8087988098201285236.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite8087988098201285236.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/1603159081585-0
/tmp/adamTestMvnnKuH0eo/1603159081585-0/test_single.vcf
/tmp/adamTestMvnnKuH0eo/1603159081585-0/test.vcf
/tmp/adamTestMvnnKuH0eo/1603159081585-0/test.vcf/.part-r-00000.crc
/tmp/adamTestMvnnKuH0eo/1603159081585-0/test.vcf/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/1603159081585-0/test.vcf/_SUCCESS
/tmp/adamTestMvnnKuH0eo/1603159081585-0/test.vcf/part-r-00000
/tmp/adamTestMvnnKuH0eo/1603159081585-0/.test_single.vcf.crc
/tmp/adamTestMvnnKuH0eo/TempSuite2954584364710310039
/tmp/adamTestMvnnKuH0eo/TempSuite5752036365515139526
/tmp/adamTestMvnnKuH0eo/TempSuite9215470869276468320.adam
/tmp/adamTestMvnnKuH0eo/TempSuite9215470869276468320.adam/part-00000-85ef3860-bc6d-42d8-9711-358f824127e9-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite9215470869276468320.adam/.part-00000-85ef3860-bc6d-42d8-9711-358f824127e9-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9215470869276468320.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9215470869276468320.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9215470869276468320.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9215470869276468320.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite9215470869276468320.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite9215470869276468320.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite9215470869276468320.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite9215470869276468320.adam/_header
/tmp/adamTestMvnnKuH0eo/noqual1264302482489153520
/tmp/adamTestMvnnKuH0eo/noqual1264302482489153520/noqualB.fastq
/tmp/adamTestMvnnKuH0eo/noqual1264302482489153520/noqualB.fastq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/noqual1264302482489153520/noqualB.fastq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/noqual1264302482489153520/noqualB.fastq/part-00000
/tmp/adamTestMvnnKuH0eo/noqual1264302482489153520/noqualB.fastq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/noqual1264302482489153520/noqualA.sam
/tmp/adamTestMvnnKuH0eo/noqual1264302482489153520/noqualA.sam/part-r-00000.sam
/tmp/adamTestMvnnKuH0eo/noqual1264302482489153520/noqualA.sam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/noqual1264302482489153520/noqualA.sam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/noqual1264302482489153520/noqualA.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnnKuH0eo/TempSuite3971400444138641728
/tmp/adamTestMvnnKuH0eo/4094267100643564265
/tmp/adamTestMvnnKuH0eo/4094267100643564265/out.cram_head
/tmp/adamTestMvnnKuH0eo/4094267100643564265/out.cram_tail
/tmp/adamTestMvnnKuH0eo/4094267100643564265/out.cram_tail/.part-r-00001.cram.crc
/tmp/adamTestMvnnKuH0eo/4094267100643564265/out.cram_tail/.part-r-00003.cram.crc
/tmp/adamTestMvnnKuH0eo/4094267100643564265/out.cram_tail/part-r-00000.cram
/tmp/adamTestMvnnKuH0eo/4094267100643564265/out.cram_tail/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/4094267100643564265/out.cram_tail/.part-r-00002.cram.crc
/tmp/adamTestMvnnKuH0eo/4094267100643564265/out.cram_tail/part-r-00002.cram
/tmp/adamTestMvnnKuH0eo/4094267100643564265/out.cram_tail/_SUCCESS
/tmp/adamTestMvnnKuH0eo/4094267100643564265/out.cram_tail/.part-r-00000.cram.crc
/tmp/adamTestMvnnKuH0eo/4094267100643564265/out.cram_tail/part-r-00001.cram
/tmp/adamTestMvnnKuH0eo/4094267100643564265/out.cram_tail/part-r-00003.cram
/tmp/adamTestMvnnKuH0eo/4094267100643564265/.out.cram.crc
/tmp/adamTestMvnnKuH0eo/4094267100643564265/out.cram
/tmp/adamTestMvnnKuH0eo/4094267100643564265/.out.cram_head.crc
/tmp/adamTestMvnnKuH0eo/4735839464626248099
/tmp/adamTestMvnnKuH0eo/4735839464626248099/sorted.vcf
/tmp/adamTestMvnnKuH0eo/4735839464626248099/.sorted.vcf.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite5203317371450743133.fasta
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite5203317371450743133.fasta/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite5203317371450743133.fasta/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite5203317371450743133.fasta/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite5203317371450743133.fasta/part-00003
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite5203317371450743133.fasta/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite5203317371450743133.fasta/part-00000
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite5203317371450743133.fasta/part-00002
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite5203317371450743133.fasta/_SUCCESS
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite5203317371450743133.fasta/part-00001
/tmp/adamTestMvnnKuH0eo/SliceDatasetSuite5203317371450743133.fasta/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6917775402554682752_1.fq
/tmp/adamTestMvnnKuH0eo/TempSuite6917775402554682752_1.fq/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6917775402554682752_1.fq/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/TempSuite6917775402554682752_1.fq/part-00000
/tmp/adamTestMvnnKuH0eo/TempSuite6917775402554682752_1.fq/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7223431686183825274.bed
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7223431686183825274.bed/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7223431686183825274.bed/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7223431686183825274.bed/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7223431686183825274.bed/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7223431686183825274.bed/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7223431686183825274.bed/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7223431686183825274.bed/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7223431686183825274.bed/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7223431686183825274.bed/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7223431686183825274.bed/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4265634291392043786
/tmp/adamTestMvnnKuH0eo/TempSuite5579024854299548032
/tmp/adamTestMvnnKuH0eo/TempSuite8395439973552844106
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite7458971555749195778
/tmp/adamTestMvnnKuH0eo/gencode.v7.annotation.trunc10.bed5652678032886793905.v7.annotation.trunc10.bed
/tmp/adamTestMvnnKuH0eo/9194994388033144763
/tmp/adamTestMvnnKuH0eo/9194994388033144763/genotypes.adam
/tmp/adamTestMvnnKuH0eo/9194994388033144763/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/9194994388033144763/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/9194994388033144763/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/9194994388033144763/genotypes.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/9194994388033144763/genotypes.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/9194994388033144763/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/9194994388033144763/genotypes.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/9194994388033144763/genotypes.adam/_metadata
/tmp/adamTestMvnnKuH0eo/9194994388033144763/genotypes.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/9194994388033144763/genotypes.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/9194994388033144763/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/9194994388033144763/genotypes.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/9194994388033144763/genotypes.adam/_header
/tmp/adamTestMvnnKuH0eo/9194994388033144763/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/small.sam8470726480421094305.sam
/tmp/adamTestMvnnKuH0eo/small.sam9092534967735201628.sam
/tmp/adamTestMvnnKuH0eo/TempSuite8415727947563937347
/tmp/adamTestMvnnKuH0eo/TempSuite5322648132616263582.adam
/tmp/adamTestMvnnKuH0eo/TempSuite5322648132616263582.adam/part-00000-aa3c1366-07a8-4295-8843-3195a8d06b74-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite5322648132616263582.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5322648132616263582.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5322648132616263582.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5322648132616263582.adam/.part-00000-aa3c1366-07a8-4295-8843-3195a8d06b74-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5322648132616263582.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite5322648132616263582.adam/_samples.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5322648132616263582.adam/._samples.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite5322648132616263582.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite5322648132616263582.adam/_header
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1000282610498395647.narrowPeak
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1000282610498395647.narrowPeak/.part-00001.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1000282610498395647.narrowPeak/.part-00003.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1000282610498395647.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1000282610498395647.narrowPeak/part-00003
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1000282610498395647.narrowPeak/.part-00000.crc
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1000282610498395647.narrowPeak/part-00000
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1000282610498395647.narrowPeak/part-00002
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1000282610498395647.narrowPeak/_SUCCESS
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1000282610498395647.narrowPeak/part-00001
/tmp/adamTestMvnnKuH0eo/FeatureDatasetFunctionsSuite1000282610498395647.narrowPeak/.part-00002.crc
/tmp/adamTestMvnnKuH0eo/TempSuite729973325390153188
/tmp/adamTestMvnnKuH0eo/TempSuite4035898249649448434.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4035898249649448434.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4035898249649448434.adam/part-00000-8a0e7d02-9de9-4cfa-839a-4a5e5d0c1b8a-c000.snappy.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4035898249649448434.adam/._header.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4035898249649448434.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4035898249649448434.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4035898249649448434.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4035898249649448434.adam/_header
/tmp/adamTestMvnnKuH0eo/TempSuite4035898249649448434.adam/.part-00000-8a0e7d02-9de9-4cfa-839a-4a5e5d0c1b8a-c000.snappy.parquet.crc
/tmp/adamTestMvnnKuH0eo/8838764985285728928
/tmp/adamTestMvnnKuH0eo/8838764985285728928/predicate.2.adam
/tmp/adamTestMvnnKuH0eo/8838764985285728928/predicate.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/8838764985285728928/predicate.2.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/8838764985285728928/predicate.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/8838764985285728928/predicate.2.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/8838764985285728928/predicate.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/8838764985285728928/predicate.2.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/8838764985285728928/predicate.2.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/8838764985285728928/predicate.2.adam/_metadata
/tmp/adamTestMvnnKuH0eo/8838764985285728928/predicate.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/8838764985285728928/predicate.2.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/8838764985285728928/predicate.2.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/8838764985285728928/predicate.2.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/8838764985285728928/predicate.2.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/8838764985285728928/predicate.2.adam/._common_metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4185296540468608988.adam
/tmp/adamTestMvnnKuH0eo/TempSuite4185296540468608988.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnnKuH0eo/TempSuite4185296540468608988.adam/._SUCCESS.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4185296540468608988.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4185296540468608988.adam/._metadata.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4185296540468608988.adam/._processingSteps.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4185296540468608988.adam/._references.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4185296540468608988.adam/_SUCCESS
/tmp/adamTestMvnnKuH0eo/TempSuite4185296540468608988.adam/_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4185296540468608988.adam/._readGroups.avro.crc
/tmp/adamTestMvnnKuH0eo/TempSuite4185296540468608988.adam/_common_metadata
/tmp/adamTestMvnnKuH0eo/TempSuite4185296540468608988.adam/_references.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4185296540468608988.adam/_processingSteps.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4185296540468608988.adam/_readGroups.avro
/tmp/adamTestMvnnKuH0eo/TempSuite4185296540468608988.adam/._common_metadata.crc
rm -rf ${ADAM_MVN_TMP_DIR}
+ rm -rf /tmp/adamTestMvnnKuH0eo

find . -name pom.xml \
    -exec sed -i.bak \
    -e "s:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=${ADAM_MVN_TMP_DIR}:sun.io.serialization.extendedDebugInfo=true:g" \
    {} \;
+ find . -name pom.xml -exec sed -i.bak -e 's:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=/tmp/adamTestMvnnKuH0eo:sun.io.serialization.extendedDebugInfo=true:g' '{}' ';'
find . -name "*.bak" -exec rm -f {} \;
+ find . -name '*.bak' -exec rm -f '{}' ';'

# run integration tests

# make a temp directory
ADAM_TMP_DIR=$(mktemp -d -t adamTestXXXXXXX)
mktemp -d -t adamTestXXXXXXX
++ mktemp -d -t adamTestXXXXXXX
+ ADAM_TMP_DIR=/tmp/adamTestZ3koW0l

# Just to be paranoid.. use a directory internal to the ADAM_TMP_DIR
ADAM_TMP_DIR=$ADAM_TMP_DIR/deleteMePleaseThisIsNoLongerNeeded
+ ADAM_TMP_DIR=/tmp/adamTestZ3koW0l/deleteMePleaseThisIsNoLongerNeeded
mkdir $ADAM_TMP_DIR
+ mkdir /tmp/adamTestZ3koW0l/deleteMePleaseThisIsNoLongerNeeded

# set the TMPDIR envar, which is used by python to choose where to make temp directories
export TMPDIR=${ADAM_TMP_DIR}
+ export TMPDIR=/tmp/adamTestZ3koW0l/deleteMePleaseThisIsNoLongerNeeded
+ TMPDIR=/tmp/adamTestZ3koW0l/deleteMePleaseThisIsNoLongerNeeded

pushd $PROJECT_ROOT
+ pushd /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/scripts/..
~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu ~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu

# Copy the jar into our temp space for testing
cp -r . $ADAM_TMP_DIR
+ cp -r . /tmp/adamTestZ3koW0l/deleteMePleaseThisIsNoLongerNeeded
popd
+ popd
~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu

pushd $ADAM_TMP_DIR
+ pushd /tmp/adamTestZ3koW0l/deleteMePleaseThisIsNoLongerNeeded
/tmp/adamTestZ3koW0l/deleteMePleaseThisIsNoLongerNeeded ~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu

# what hadoop version are we on? format string for downloading spark assembly
if [[ $HADOOP_VERSION =~ ^2\.7 ]]; then
    HADOOP=hadoop2.7
else
    echo "Unknown Hadoop version."
    exit 1
fi
+ [[ 2.7.5 =~ ^2\.7 ]]
+ HADOOP=hadoop2.7

# set spark artifact string for downloading assembly
SPARK=spark-${SPARK_VERSION}
+ SPARK=spark-3.0.1
    
# download prepackaged spark assembly

# Spark 2.4.3+ and less than 3.0.0 needs special case for Scala 2.12
if [ ${SCALA_VERSION} == 2.12 ] && [ ${SPARK_VERSION} == 2.4.6 ]
then
    curl \
        -L "https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/${SPARK}/${SPARK}-bin-without-hadoop-scala-2.12.tgz" \
        -o ${SPARK}-bin-without-hadoop-scala-2.12.tgz

    tar xzvf ${SPARK}-bin-without-hadoop-scala-2.12.tgz
    export SPARK_HOME=${ADAM_TMP_DIR}/${SPARK}-bin-without-hadoop-scala-2.12

    curl \
        -L "https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=hadoop/core/hadoop-2.7.7/hadoop-2.7.7.tar.gz" \
        -o hadoop-2.7.7.tar.gz

    tar xzvf hadoop-2.7.7.tar.gz

    # remove references to avro 1.7.x
    find hadoop-2.7.7 -name *.jar | grep avro | xargs rm

    # download avro 1.8.x
    #curl \
    #    -L "https://repo1.maven.org/maven2/org/apache/avro/avro/1.8.2/avro-1.8.2.jar" \
    #    -o hadoop-2.7.7/share/hadoop/common/avro-1.8.2.jar

    export SPARK_DIST_CLASSPATH=$(hadoop-2.7.7/bin/hadoop classpath)
else
    curl \
        -v \
        -L "https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/${SPARK}/${SPARK}-bin-${HADOOP}.tgz" \
        -o ${SPARK}-bin-${HADOOP}.tgz

    tar xzvf ${SPARK}-bin-${HADOOP}.tgz
    export SPARK_HOME=${ADAM_TMP_DIR}/${SPARK}-bin-${HADOOP}
fi
+ '[' 2.12 == 2.12 ']'
+ '[' 3.0.1 == 2.4.6 ']'
+ curl -v -L 'https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/spark-3.0.1/spark-3.0.1-bin-hadoop2.7.tgz' -o spark-3.0.1-bin-hadoop2.7.tgz
*   Trying 95.216.26.30...
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0* Connected to www.apache.org (95.216.26.30) port 443 (#0)
* ALPN, offering http/1.1
* Cipher selection: ALL:!EXPORT:!EXPORT40:!EXPORT56:!aNULL:!LOW:!RC4:@STRENGTH
* successfully set certificate verify locations:
*   CAfile: /home/jenkins/anaconda2/ssl/cacert.pem
  CApath: none
* TLSv1.2 (OUT), TLS header, Certificate Status (22):
} [5 bytes data]
* TLSv1.2 (OUT), TLS handshake, Client hello (1):
} [512 bytes data]
* TLSv1.2 (IN), TLS handshake, Server hello (2):
{ [108 bytes data]
* TLSv1.2 (IN), TLS handshake, Certificate (11):
{ [4639 bytes data]
* TLSv1.2 (IN), TLS handshake, Server key exchange (12):
{ [333 bytes data]
* TLSv1.2 (IN), TLS handshake, Server finished (14):
{ [4 bytes data]
* TLSv1.2 (OUT), TLS handshake, Client key exchange (16):
} [70 bytes data]
* TLSv1.2 (OUT), TLS change cipher, Client hello (1):
} [1 bytes data]
* TLSv1.2 (OUT), TLS handshake, Finished (20):
} [16 bytes data]
* TLSv1.2 (IN), TLS change cipher, Client hello (1):
{ [1 bytes data]
* TLSv1.2 (IN), TLS handshake, Finished (20):
{ [16 bytes data]
* SSL connection using TLSv1.2 / ECDHE-RSA-AES256-GCM-SHA384
* ALPN, server accepted to use http/1.1
* Server certificate:
*  subject: OU=Domain Control Validated; OU=PositiveSSL Wildcard; CN=*.apache.org
*  start date: Jul  1 00:00:00 2019 GMT
*  expire date: Jun 30 23:59:59 2021 GMT
*  subjectAltName: host "www.apache.org" matched cert's "*.apache.org"
*  issuer: C=GB; ST=Greater Manchester; L=Salford; O=Sectigo Limited; CN=Sectigo RSA Domain Validation Secure Server CA
*  SSL certificate verify ok.
} [5 bytes data]
> GET /dyn/mirrors/mirrors.cgi?action=download&filename=spark/spark-3.0.1/spark-3.0.1-bin-hadoop2.7.tgz HTTP/1.1
> Host: www.apache.org
> User-Agent: curl/7.49.0
> Accept: */*
> 
{ [5 bytes data]
< HTTP/1.1 302 Found
< Date: Tue, 20 Oct 2020 02:22:40 GMT
< Server: Apache
< Cache-Control: private, max-age=3600
< Location: https://mirrors.koehn.com/apache/spark/spark-3.0.1/spark-3.0.1-bin-hadoop2.7.tgz
< Expires: Tue, 20 Oct 2020 03:22:40 GMT
< Content-Length: 0
< 

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
* Connection #0 to host www.apache.org left intact
* Issue another request to this URL: 'https://mirrors.koehn.com/apache/spark/spark-3.0.1/spark-3.0.1-bin-hadoop2.7.tgz'
*   Trying 209.240.109.238...
* Connected to mirrors.koehn.com (209.240.109.238) port 443 (#1)
* ALPN, offering http/1.1
* Cipher selection: ALL:!EXPORT:!EXPORT40:!EXPORT56:!aNULL:!LOW:!RC4:@STRENGTH
* successfully set certificate verify locations:
*   CAfile: /home/jenkins/anaconda2/ssl/cacert.pem
  CApath: none
* TLSv1.2 (OUT), TLS header, Certificate Status (22):
} [5 bytes data]
* TLSv1.2 (OUT), TLS handshake, Client hello (1):
} [512 bytes data]
* TLSv1.2 (IN), TLS handshake, Server hello (2):
{ [108 bytes data]
* TLSv1.2 (IN), TLS handshake, Certificate (11):
{ [2550 bytes data]
* TLSv1.2 (IN), TLS handshake, Server key exchange (12):
{ [333 bytes data]
* TLSv1.2 (IN), TLS handshake, Server finished (14):
{ [4 bytes data]
* TLSv1.2 (OUT), TLS handshake, Client key exchange (16):
} [70 bytes data]
* TLSv1.2 (OUT), TLS change cipher, Client hello (1):
} [1 bytes data]
* TLSv1.2 (OUT), TLS handshake, Finished (20):
} [16 bytes data]

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0* TLSv1.2 (IN), TLS change cipher, Client hello (1):
{ [1 bytes data]
* TLSv1.2 (IN), TLS handshake, Finished (20):
{ [16 bytes data]
* SSL connection using TLSv1.2 / ECDHE-RSA-AES256-GCM-SHA384
* ALPN, server accepted to use http/1.1
* Server certificate:
*  subject: CN=*.koehn.com
*  start date: Sep 18 19:42:16 2020 GMT
*  expire date: Dec 17 19:42:16 2020 GMT
*  subjectAltName: host "mirrors.koehn.com" matched cert's "*.koehn.com"
*  issuer: C=US; O=Let's Encrypt; CN=Let's Encrypt Authority X3
*  SSL certificate verify ok.
} [5 bytes data]
> GET /apache/spark/spark-3.0.1/spark-3.0.1-bin-hadoop2.7.tgz HTTP/1.1
> Host: mirrors.koehn.com
> User-Agent: curl/7.49.0
> Accept: */*
> 
{ [5 bytes data]
< HTTP/1.1 200 OK
< Date: Tue, 20 Oct 2020 02:22:40 GMT
< Server: Apache/2.4.46 (Unix)
< Last-Modified: Fri, 28 Aug 2020 09:25:52 GMT
< ETag: "d1bdd64-5adeca3a117c0"
< Accept-Ranges: bytes
< Content-Length: 219929956
< Content-Type: application/x-gzip
< Strict-Transport-Security: max-age=63072000; includeSubDomains; preload
< 
{ [5 bytes data]

  7  209M    7 15.3M    0     0  8428k      0  0:00:25  0:00:01  0:00:24 15.3M
 22  209M   22 48.1M    0     0  16.4M      0  0:00:12  0:00:02  0:00:10 23.4M
 34  209M   34 73.2M    0     0  18.9M      0  0:00:11  0:00:03  0:00:08 24.3M
 44  209M   44 92.8M    0     0  18.9M      0  0:00:11  0:00:04  0:00:07 23.0M
 51  209M   51  108M    0     0  18.5M      0  0:00:11  0:00:05  0:00:06 21.7M
 59  209M   59  125M    0     0  18.2M      0  0:00:11  0:00:06  0:00:05 22.0M
 68  209M   68  143M    0     0  18.2M      0  0:00:11  0:00:07  0:00:04 19.2M
 77  209M   77  161M    0     0  18.2M      0  0:00:11  0:00:08  0:00:03 17.6M
 85  209M   85  179M    0     0  18.2M      0  0:00:11  0:00:09  0:00:02 17.4M
 94  209M   94  198M    0     0  18.2M      0  0:00:11  0:00:10  0:00:01 17.8M
100  209M  100  209M    0     0  18.2M      0  0:00:11  0:00:11 --:--:-- 18.2M
* Connection #1 to host mirrors.koehn.com left intact
+ tar xzvf spark-3.0.1-bin-hadoop2.7.tgz
spark-3.0.1-bin-hadoop2.7/
spark-3.0.1-bin-hadoop2.7/RELEASE
spark-3.0.1-bin-hadoop2.7/examples/
spark-3.0.1-bin-hadoop2.7/examples/src/
spark-3.0.1-bin-hadoop2.7/examples/src/main/
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/FPGrowthExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GBTExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ALSExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/KMeansExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DecisionTreeExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LogisticRegressionSummaryExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/TokenizerExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/UnaryTransformerExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/Word2VecExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LinearSVCExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/CorrelationExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/BucketizerExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ImputerExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/StringIndexerExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/NGramExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/IsotonicRegressionExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DecisionTreeRegressionExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/OneHotEncoderExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ChiSquareTestExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PCAExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/StopWordsRemoverExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DeveloperApiExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LDAExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/StandardScalerExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GradientBoostedTreeRegressorExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RFormulaExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MultilayerPerceptronClassifierExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RandomForestRegressorExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/OneVsRestExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PolynomialExpansionExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ChiSqSelectorExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MinMaxScalerExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RobustScalerExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/FeatureHasherExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LogisticRegressionWithElasticNetExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/FMClassifierExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/IndexToStringExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LinearRegressionWithElasticNetExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GeneralizedLinearRegressionExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RandomForestExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/BucketedRandomProjectionLSHExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LinearRegressionExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/BisectingKMeansExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MinHashLSHExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RandomForestClassifierExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GradientBoostedTreeClassifierExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LogisticRegressionExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PowerIterationClusteringExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/CountVectorizerExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/TfIdfExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/VectorSlicerExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MulticlassLogisticRegressionWithElasticNetExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MaxAbsScalerExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/BinarizerExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DataFrameExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/InteractionExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/VectorIndexerExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ModelSelectionViaCrossValidationExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/EstimatorTransformerParamExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PipelineExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/NaiveBayesExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/VectorSizeHintExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PrefixSpanExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/SQLTransformerExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/SummarizerExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DCTExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/AFTSurvivalRegressionExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ModelSelectionViaTrainValidationSplitExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DecisionTreeClassificationExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/QuantileDiscretizerExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/NormalizerExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/FMRegressorExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/VectorAssemblerExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ElementwiseProductExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GaussianMixtureExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SkewedGroupByTest.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkALS.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/HypothesisTestingExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/KernelDensityEstimationExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/FPGrowthExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LBFGSExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SVDExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/KMeansExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/Word2VecExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StratifiedSamplingExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LogisticRegressionWithLBFGSExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/IsotonicRegressionExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RandomRDDGeneration.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/DecisionTreeRegressionExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SummaryStatisticsExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StreamingTestExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PMMLModelExportExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/BinaryClassificationMetricsExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/MulticlassMetricsExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LDAExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StreamingKMeansExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StandardScalerExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SimpleFPGrowth.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PCAOnRowMatrixExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/Correlations.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/ChiSqSelectorExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SparseNaiveBayes.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StreamingLinearRegressionExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SVMWithSGDExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/MultivariateSummarizer.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/TallSkinnySVD.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/TFIDFExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/GradientBoostedTreesRunner.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/MovieLensALS.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PCAOnSourceVectorExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/MultiLabelMetricsExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RecommendationExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/BisectingKMeansExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/GradientBoostingClassificationExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PowerIterationClusteringExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LatentDirichletAllocationExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RankingMetricsExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/DenseKMeans.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RandomForestClassificationExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/TallSkinnyPCA.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/AbstractParams.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/NaiveBayesExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PrefixSpanExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/GradientBoostingRegressionExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/DecisionTreeRunner.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StreamingLogisticRegression.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/HypothesisTestingKolmogorovSmirnovTestExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/BinaryClassification.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/DecisionTreeClassificationExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SampledRDDs.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/AssociationRulesExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/CosineSimilarity.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RandomForestRegressionExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/CorrelationsExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/NormalizerExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/ElementwiseProductExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/GaussianMixtureExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ExceptionHandlingTest.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/BroadcastTest.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/HdfsTest.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkHdfsLR.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/SqlNetworkWordCount.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/QueueStream.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/RawNetworkGrep.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/DirectKafkaWordCount.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/StatefulNetworkWordCount.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/DirectKerberizedKafkaWordCount.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/HdfsWordCount.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/CustomReceiver.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/StreamingExamples.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/clickstream/
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/clickstream/PageViewStream.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/clickstream/PageViewGenerator.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/RecoverableNetworkWordCount.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/NetworkWordCount.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalLR.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkKMeans.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/MultiBroadcastTest.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkLR.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalPi.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/Analytics.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/SynthBenchmark.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/ComprehensiveExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/AggregateMessagesExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/SSSPExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/PageRankExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/ConnectedComponentsExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/LiveJournalPageRank.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/TriangleCountingExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalFileLR.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkPageRank.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/RDDRelation.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/SimpleTypedAggregator.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredNetworkWordCount.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredNetworkWordCountWindowed.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredSessionization.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredKafkaWordCount.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredKerberizedKafkaWordCount.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/hive/
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/hive/SparkHiveExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/UserDefinedScalar.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/UserDefinedTypedAggregation.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/SparkSQLExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/SQLDataSourceExample.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/UserDefinedUntypedAggregation.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SimpleSkewedGroupByTest.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalKMeans.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/AccumulatorMetricsTest.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/pythonconverters/
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/pythonconverters/AvroConverters.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkPi.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalALS.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/GroupByTest.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LogQuery.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/DriverSubmissionTest.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/DFSReadWriteTest.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkRemoteFileTest.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkTC.scala
spark-3.0.1-bin-hadoop2.7/examples/src/main/resources/
spark-3.0.1-bin-hadoop2.7/examples/src/main/resources/users.avro
spark-3.0.1-bin-hadoop2.7/examples/src/main/resources/full_user.avsc
spark-3.0.1-bin-hadoop2.7/examples/src/main/resources/dir1/
spark-3.0.1-bin-hadoop2.7/examples/src/main/resources/dir1/file1.parquet
spark-3.0.1-bin-hadoop2.7/examples/src/main/resources/dir1/file3.json
spark-3.0.1-bin-hadoop2.7/examples/src/main/resources/dir1/dir2/
spark-3.0.1-bin-hadoop2.7/examples/src/main/resources/dir1/dir2/file2.parquet
spark-3.0.1-bin-hadoop2.7/examples/src/main/resources/users.orc
spark-3.0.1-bin-hadoop2.7/examples/src/main/resources/kv1.txt
spark-3.0.1-bin-hadoop2.7/examples/src/main/resources/users.parquet
spark-3.0.1-bin-hadoop2.7/examples/src/main/resources/people.txt
spark-3.0.1-bin-hadoop2.7/examples/src/main/resources/user.avsc
spark-3.0.1-bin-hadoop2.7/examples/src/main/resources/people.csv
spark-3.0.1-bin-hadoop2.7/examples/src/main/resources/employees.json
spark-3.0.1-bin-hadoop2.7/examples/src/main/resources/people.json
spark-3.0.1-bin-hadoop2.7/examples/src/main/scripts/
spark-3.0.1-bin-hadoop2.7/examples/src/main/scripts/getGpusResources.sh
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaInteractionExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaRFormulaExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaNaiveBayesExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaImputerExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaMultilayerPerceptronClassifierExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaRandomForestRegressorExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaRandomForestClassifierExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaTfIdfExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaGradientBoostedTreeClassifierExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaCountVectorizerExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaRobustScalerExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaLogisticRegressionWithElasticNetExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaVectorSizeHintExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaMulticlassLogisticRegressionWithElasticNetExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaKMeansExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaVectorIndexerExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaBinarizerExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaPolynomialExpansionExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaStringIndexerExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaPCAExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaOneVsRestExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaLabeledDocument.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaFeatureHasherExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaFMRegressorExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaVectorAssemblerExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaSummarizerExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaBisectingKMeansExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaPrefixSpanExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaBucketedRandomProjectionLSHExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaWord2VecExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaVectorSlicerExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaLinearRegressionWithElasticNetExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaIndexToStringExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaDecisionTreeClassificationExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaDCTExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaTokenizerExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaALSExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaFMClassifierExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaEstimatorTransformerParamExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaSQLTransformerExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaModelSelectionViaTrainValidationSplitExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaQuantileDiscretizerExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaCorrelationExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaNGramExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaGradientBoostedTreeRegressorExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaModelSelectionViaCrossValidationExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaIsotonicRegressionExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaMinMaxScalerExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaChiSquareTestExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaElementwiseProductExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaAFTSurvivalRegressionExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaStandardScalerExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaDecisionTreeRegressionExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaOneHotEncoderExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaDocument.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaFPGrowthExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaLDAExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaMinHashLSHExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaChiSqSelectorExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaNormalizerExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaGaussianMixtureExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaStopWordsRemoverExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaPipelineExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaGeneralizedLinearRegressionExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaLinearSVCExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaLogisticRegressionSummaryExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaPowerIterationClusteringExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaMaxAbsScalerExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaBucketizerExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaHdfsLR.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaNaiveBayesExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaSVDExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaKernelDensityEstimationExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaHypothesisTestingKolmogorovSmirnovTestExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaKMeansExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaPCAExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaRandomForestClassificationExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaCorrelationsExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaLatentDirichletAllocationExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaBisectingKMeansExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaPrefixSpanExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaSummaryStatisticsExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaSVMWithSGDExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaGradientBoostingRegressionExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaDecisionTreeClassificationExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaBinaryClassificationMetricsExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaSimpleFPGrowth.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaALS.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaIsotonicRegressionExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaElementwiseProductExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaGradientBoostingClassificationExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaMulticlassClassificationMetricsExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaLogisticRegressionWithLBFGSExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaRecommendationExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaAssociationRulesExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaDecisionTreeRegressionExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaLBFGSExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaHypothesisTestingExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaRankingMetricsExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaMultiLabelClassificationMetricsExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaStratifiedSamplingExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaChiSqSelectorExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaGaussianMixtureExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaRandomForestRegressionExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaStreamingTestExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaPowerIterationClusteringExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaLogQuery.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaDirectKafkaWordCount.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaRecoverableNetworkWordCount.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaQueueStream.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaRecord.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaCustomReceiver.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaNetworkWordCount.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaSqlNetworkWordCount.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaDirectKerberizedKafkaWordCount.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaStatefulNetworkWordCount.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaStatusTrackerDemo.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredNetworkWordCount.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredSessionization.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredKerberizedKafkaWordCount.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredNetworkWordCountWindowed.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredKafkaWordCount.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/hive/
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/hive/JavaSparkHiveExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaSparkSQLExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaSQLDataSourceExample.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaUserDefinedScalar.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaUserDefinedUntypedAggregation.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaUserDefinedTypedAggregation.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaTC.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaWordCount.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaPageRank.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaSparkPi.java
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/lda.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/logit.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/gaussianMixture.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/survreg.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/glm.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/powerIterationClustering.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/als.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/ml.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/fpm.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/bisectingKmeans.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/isoreg.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/mlp.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/kmeans.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/randomForest.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/gbt.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/kstest.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/svmLinear.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/decisionTree.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/naiveBayes.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/ml/prefixSpan.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/data-manipulation.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/streaming/
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/streaming/structured_network_wordcount.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/RSparkSQLExample.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/r/dataframe.R
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/bisecting_k_means_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/stopwords_remover_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/chisq_selector_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/cross_validator.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/vector_indexer_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/binarizer_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/tokenizer_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/quantile_discretizer_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/vector_size_hint_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/elementwise_product_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/tf_idf_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/pca_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/chi_square_test_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/correlation_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/rformula_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/fpgrowth_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/dataframe_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/train_validation_split.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/fm_classifier_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/index_to_string_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/gradient_boosted_tree_regressor_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/logistic_regression_summary_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/feature_hasher_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/vector_slicer_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/kmeans_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/robust_scaler_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/als_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/decision_tree_classification_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/generalized_linear_regression_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/fm_regressor_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/multiclass_logistic_regression_with_elastic_net.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/imputer_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/interaction_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/naive_bayes_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/string_indexer_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/gradient_boosted_tree_classifier_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/sql_transformer.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/logistic_regression_with_elastic_net.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/decision_tree_regression_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/lda_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/min_hash_lsh_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/estimator_transformer_param_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/gaussian_mixture_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/prefixspan_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/summarizer_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/max_abs_scaler_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/aft_survival_regression.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/onehot_encoder_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/normalizer_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/random_forest_regressor_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/random_forest_classifier_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/vector_assembler_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/power_iteration_clustering_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/linear_regression_with_elastic_net.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/count_vectorizer_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/standard_scaler_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/bucketizer_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/multilayer_perceptron_classification.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/dct_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/linearsvc.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/polynomial_expansion_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/isotonic_regression_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/n_gram_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/word2vec_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/min_max_scaler_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/bucketed_random_projection_lsh_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/one_vs_rest_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/ml/pipeline_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/bisecting_k_means_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/multi_class_metrics_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/regression_metrics_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/correlations.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/elementwise_product_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/svd_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/tf_idf_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/kernel_density_estimation_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/pca_rowmatrix_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/ranking_metrics_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/gradient_boosting_regression_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/fpgrowth_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/random_rdd_generation.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/word2vec.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/linear_regression_with_sgd_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/logistic_regression_with_lbfgs_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/kmeans.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/streaming_k_means_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/decision_tree_classification_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/correlations_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/naive_bayes_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/decision_tree_regression_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/sampled_rdds.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/gaussian_mixture_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/hypothesis_testing_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/streaming_linear_regression_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/stratified_sampling_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/gaussian_mixture_model.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/normalizer_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/summary_statistics_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/svm_with_sgd_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/logistic_regression.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/power_iteration_clustering_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/standard_scaler_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/random_forest_classification_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/gradient_boosting_classification_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/random_forest_regression_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/isotonic_regression_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/k_means_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/word2vec_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/binary_classification_metrics_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/multi_label_metrics_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/hypothesis_testing_kolmogorov_smirnov_test_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/latent_dirichlet_allocation_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/mllib/recommendation_example.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/transitive_closure.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/parquet_inputformat.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/streaming/
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/streaming/sql_network_wordcount.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/streaming/queue_stream.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/streaming/recoverable_network_wordcount.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/streaming/network_wordjoinsentiments.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/streaming/network_wordcount.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/streaming/hdfs_wordcount.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/streaming/stateful_network_wordcount.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/kmeans.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/als.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/sql/
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/sql/streaming/
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/sql/streaming/structured_kafka_wordcount.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/sql/streaming/structured_network_wordcount_windowed.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/sql/streaming/structured_network_wordcount.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/sql/basic.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/sql/datasource.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/sql/hive.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/sql/arrow.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/pagerank.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/logistic_regression.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/wordcount.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/status_api_demo.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/avro_inputformat.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/pi.py
spark-3.0.1-bin-hadoop2.7/examples/src/main/python/sort.py
spark-3.0.1-bin-hadoop2.7/examples/jars/
spark-3.0.1-bin-hadoop2.7/examples/jars/spark-examples_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/examples/jars/scopt_2.12-3.7.1.jar
spark-3.0.1-bin-hadoop2.7/data/
spark-3.0.1-bin-hadoop2.7/data/mllib/
spark-3.0.1-bin-hadoop2.7/data/mllib/ridge-data/
spark-3.0.1-bin-hadoop2.7/data/mllib/ridge-data/lpsa.data
spark-3.0.1-bin-hadoop2.7/data/mllib/streaming_kmeans_data_test.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/sample_multiclass_classification_data.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/sample_isotonic_regression_libsvm_data.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/sample_svm_data.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/iris_libsvm.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/sample_lda_data.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/sample_lda_libsvm_data.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/sample_movielens_data.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/sample_libsvm_data.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/sample_binary_classification_data.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/sample_fpgrowth.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/images/
spark-3.0.1-bin-hadoop2.7/data/mllib/images/partitioned/
spark-3.0.1-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/
spark-3.0.1-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-01/
spark-3.0.1-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-01/BGRA_alpha_60.png
spark-3.0.1-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-01/BGRA.png
spark-3.0.1-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-02/
spark-3.0.1-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-02/chr30.4.184.jpg
spark-3.0.1-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-02/grayscale.jpg
spark-3.0.1-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/
spark-3.0.1-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-01/
spark-3.0.1-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-01/not-image.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-01/29.5.a_b_EGDP022204.jpg
spark-3.0.1-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-02/
spark-3.0.1-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-02/DP153539.jpg
spark-3.0.1-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-02/54893.jpg
spark-3.0.1-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-02/DP802813.jpg
spark-3.0.1-bin-hadoop2.7/data/mllib/images/origin/
spark-3.0.1-bin-hadoop2.7/data/mllib/images/origin/multi-channel/
spark-3.0.1-bin-hadoop2.7/data/mllib/images/origin/multi-channel/BGRA_alpha_60.png
spark-3.0.1-bin-hadoop2.7/data/mllib/images/origin/multi-channel/chr30.4.184.jpg
spark-3.0.1-bin-hadoop2.7/data/mllib/images/origin/multi-channel/BGRA.png
spark-3.0.1-bin-hadoop2.7/data/mllib/images/origin/multi-channel/grayscale.jpg
spark-3.0.1-bin-hadoop2.7/data/mllib/images/origin/license.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/images/origin/kittens/
spark-3.0.1-bin-hadoop2.7/data/mllib/images/origin/kittens/not-image.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/images/origin/kittens/DP153539.jpg
spark-3.0.1-bin-hadoop2.7/data/mllib/images/origin/kittens/54893.jpg
spark-3.0.1-bin-hadoop2.7/data/mllib/images/origin/kittens/29.5.a_b_EGDP022204.jpg
spark-3.0.1-bin-hadoop2.7/data/mllib/images/origin/kittens/DP802813.jpg
spark-3.0.1-bin-hadoop2.7/data/mllib/images/license.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/gmm_data.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/sample_linear_regression_data.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/kmeans_data.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/pagerank_data.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/pic_data.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/sample_kmeans_data.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/als/
spark-3.0.1-bin-hadoop2.7/data/mllib/als/sample_movielens_ratings.txt
spark-3.0.1-bin-hadoop2.7/data/mllib/als/test.data
spark-3.0.1-bin-hadoop2.7/data/streaming/
spark-3.0.1-bin-hadoop2.7/data/streaming/AFINN-111.txt
spark-3.0.1-bin-hadoop2.7/data/graphx/
spark-3.0.1-bin-hadoop2.7/data/graphx/followers.txt
spark-3.0.1-bin-hadoop2.7/data/graphx/users.txt
spark-3.0.1-bin-hadoop2.7/yarn/
spark-3.0.1-bin-hadoop2.7/yarn/spark-3.0.1-yarn-shuffle.jar
spark-3.0.1-bin-hadoop2.7/bin/
spark-3.0.1-bin-hadoop2.7/bin/spark-class.cmd
spark-3.0.1-bin-hadoop2.7/bin/run-example
spark-3.0.1-bin-hadoop2.7/bin/run-example.cmd
spark-3.0.1-bin-hadoop2.7/bin/spark-class
spark-3.0.1-bin-hadoop2.7/bin/spark-class2.cmd
spark-3.0.1-bin-hadoop2.7/bin/find-spark-home
spark-3.0.1-bin-hadoop2.7/bin/spark-submit
spark-3.0.1-bin-hadoop2.7/bin/pyspark
spark-3.0.1-bin-hadoop2.7/bin/find-spark-home.cmd
spark-3.0.1-bin-hadoop2.7/bin/docker-image-tool.sh
spark-3.0.1-bin-hadoop2.7/bin/spark-shell.cmd
spark-3.0.1-bin-hadoop2.7/bin/spark-sql.cmd
spark-3.0.1-bin-hadoop2.7/bin/load-spark-env.cmd
spark-3.0.1-bin-hadoop2.7/bin/sparkR2.cmd
spark-3.0.1-bin-hadoop2.7/bin/beeline.cmd
spark-3.0.1-bin-hadoop2.7/bin/pyspark.cmd
spark-3.0.1-bin-hadoop2.7/bin/spark-shell2.cmd
spark-3.0.1-bin-hadoop2.7/bin/spark-sql2.cmd
spark-3.0.1-bin-hadoop2.7/bin/sparkR
spark-3.0.1-bin-hadoop2.7/bin/spark-sql
spark-3.0.1-bin-hadoop2.7/bin/spark-shell
spark-3.0.1-bin-hadoop2.7/bin/spark-submit.cmd
spark-3.0.1-bin-hadoop2.7/bin/load-spark-env.sh
spark-3.0.1-bin-hadoop2.7/bin/beeline
spark-3.0.1-bin-hadoop2.7/bin/sparkR.cmd
spark-3.0.1-bin-hadoop2.7/bin/pyspark2.cmd
spark-3.0.1-bin-hadoop2.7/bin/spark-submit2.cmd
spark-3.0.1-bin-hadoop2.7/sbin/
spark-3.0.1-bin-hadoop2.7/sbin/stop-thriftserver.sh
spark-3.0.1-bin-hadoop2.7/sbin/stop-slaves.sh
spark-3.0.1-bin-hadoop2.7/sbin/spark-config.sh
spark-3.0.1-bin-hadoop2.7/sbin/start-mesos-dispatcher.sh
spark-3.0.1-bin-hadoop2.7/sbin/stop-mesos-dispatcher.sh
spark-3.0.1-bin-hadoop2.7/sbin/stop-master.sh
spark-3.0.1-bin-hadoop2.7/sbin/start-thriftserver.sh
spark-3.0.1-bin-hadoop2.7/sbin/spark-daemons.sh
spark-3.0.1-bin-hadoop2.7/sbin/stop-all.sh
spark-3.0.1-bin-hadoop2.7/sbin/start-master.sh
spark-3.0.1-bin-hadoop2.7/sbin/start-slave.sh
spark-3.0.1-bin-hadoop2.7/sbin/stop-slave.sh
spark-3.0.1-bin-hadoop2.7/sbin/start-slaves.sh
spark-3.0.1-bin-hadoop2.7/sbin/start-history-server.sh
spark-3.0.1-bin-hadoop2.7/sbin/stop-mesos-shuffle-service.sh
spark-3.0.1-bin-hadoop2.7/sbin/stop-history-server.sh
spark-3.0.1-bin-hadoop2.7/sbin/start-all.sh
spark-3.0.1-bin-hadoop2.7/sbin/start-mesos-shuffle-service.sh
spark-3.0.1-bin-hadoop2.7/sbin/slaves.sh
spark-3.0.1-bin-hadoop2.7/sbin/spark-daemon.sh
spark-3.0.1-bin-hadoop2.7/README.md
spark-3.0.1-bin-hadoop2.7/licenses/
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-zstd.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-scala.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-JTransforms.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-pyrolite.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-mustache.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-scopt.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-paranamer.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-istack-commons-runtime.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-vis-timeline.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-bootstrap.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-javax-transaction-transaction-api.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-arpack.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-xmlenc.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-zstd-jni.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-spire.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-cloudpickle.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-automaton.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-sbt-launch-lib.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-slf4j.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-jquery.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-jakarta.activation-api.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-matchMedia-polyfill.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-kryo.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-JLargeArrays.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-netlib.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-jakarta.xml.bind-api.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-graphlib-dot.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-jakarta-ws-rs-api
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-f2j.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-d3.min.js.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-javolution.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-modernizr.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-join.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-py4j.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-javassist.html
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-respond.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-jakarta-annotation-api
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-datatables.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-re2j.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-janino.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-CC0.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-json-formatter.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-heapq.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-jodd.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-jsp-api.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-reflectasm.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-jline.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-pmml-model.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-machinist.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-sorttable.js.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-leveldbjni.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-protobuf.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-dagre-d3.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-jaxb-runtime.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-antlr.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-minlog.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-AnchorJS.txt
spark-3.0.1-bin-hadoop2.7/licenses/LICENSE-dnsjava.txt
spark-3.0.1-bin-hadoop2.7/LICENSE
spark-3.0.1-bin-hadoop2.7/kubernetes/
spark-3.0.1-bin-hadoop2.7/kubernetes/dockerfiles/
spark-3.0.1-bin-hadoop2.7/kubernetes/dockerfiles/spark/
spark-3.0.1-bin-hadoop2.7/kubernetes/dockerfiles/spark/entrypoint.sh
spark-3.0.1-bin-hadoop2.7/kubernetes/dockerfiles/spark/bindings/
spark-3.0.1-bin-hadoop2.7/kubernetes/dockerfiles/spark/bindings/R/
spark-3.0.1-bin-hadoop2.7/kubernetes/dockerfiles/spark/bindings/R/Dockerfile
spark-3.0.1-bin-hadoop2.7/kubernetes/dockerfiles/spark/bindings/python/
spark-3.0.1-bin-hadoop2.7/kubernetes/dockerfiles/spark/bindings/python/Dockerfile
spark-3.0.1-bin-hadoop2.7/kubernetes/dockerfiles/spark/Dockerfile
spark-3.0.1-bin-hadoop2.7/kubernetes/tests/
spark-3.0.1-bin-hadoop2.7/kubernetes/tests/pyfiles.py
spark-3.0.1-bin-hadoop2.7/kubernetes/tests/worker_memory_check.py
spark-3.0.1-bin-hadoop2.7/kubernetes/tests/py_container_checks.py
spark-3.0.1-bin-hadoop2.7/R/
spark-3.0.1-bin-hadoop2.7/R/lib/
spark-3.0.1-bin-hadoop2.7/R/lib/sparkr.zip
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/html/
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/html/00Index.html
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/html/R.css
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/help/
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/help/aliases.rds
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/help/AnIndex
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/help/paths.rds
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/help/SparkR.rdx
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/help/SparkR.rdb
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/DESCRIPTION
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/Meta/
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/Meta/vignette.rds
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/Meta/features.rds
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/Meta/nsInfo.rds
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/Meta/links.rds
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/Meta/Rd.rds
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/Meta/package.rds
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/Meta/hsearch.rds
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/doc/
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/doc/sparkr-vignettes.R
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/doc/sparkr-vignettes.Rmd
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/doc/sparkr-vignettes.html
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/doc/index.html
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/INDEX
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/profile/
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/profile/general.R
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/profile/shell.R
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/R/
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/R/SparkR
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/R/SparkR.rdx
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/R/SparkR.rdb
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/worker/
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/worker/worker.R
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/worker/daemon.R
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/NAMESPACE
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/tests/
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/tests/testthat/
spark-3.0.1-bin-hadoop2.7/R/lib/SparkR/tests/testthat/test_basic.R
spark-3.0.1-bin-hadoop2.7/NOTICE
spark-3.0.1-bin-hadoop2.7/jars/
spark-3.0.1-bin-hadoop2.7/jars/pyrolite-4.30.jar
spark-3.0.1-bin-hadoop2.7/jars/parquet-hadoop-1.10.1.jar
spark-3.0.1-bin-hadoop2.7/jars/apacheds-kerberos-codec-2.0.0-M15.jar
spark-3.0.1-bin-hadoop2.7/jars/hive-shims-2.3.7.jar
spark-3.0.1-bin-hadoop2.7/jars/jackson-databind-2.10.0.jar
spark-3.0.1-bin-hadoop2.7/jars/spire_2.12-0.17.0-M1.jar
spark-3.0.1-bin-hadoop2.7/jars/jul-to-slf4j-1.7.30.jar
spark-3.0.1-bin-hadoop2.7/jars/json4s-ast_2.12-3.6.6.jar
spark-3.0.1-bin-hadoop2.7/jars/jersey-media-jaxb-2.30.jar
spark-3.0.1-bin-hadoop2.7/jars/hadoop-common-2.7.4.jar
spark-3.0.1-bin-hadoop2.7/jars/xbean-asm7-shaded-4.15.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-catalyst_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/commons-logging-1.1.3.jar
spark-3.0.1-bin-hadoop2.7/jars/RoaringBitmap-0.7.45.jar
spark-3.0.1-bin-hadoop2.7/jars/hadoop-mapreduce-client-common-2.7.4.jar
spark-3.0.1-bin-hadoop2.7/jars/jakarta.inject-2.6.1.jar
spark-3.0.1-bin-hadoop2.7/jars/jackson-xc-1.9.13.jar
spark-3.0.1-bin-hadoop2.7/jars/flatbuffers-java-1.9.0.jar
spark-3.0.1-bin-hadoop2.7/jars/kubernetes-model-common-4.9.2.jar
spark-3.0.1-bin-hadoop2.7/jars/json-1.8.jar
spark-3.0.1-bin-hadoop2.7/jars/jaxb-runtime-2.3.2.jar
spark-3.0.1-bin-hadoop2.7/jars/hadoop-hdfs-2.7.4.jar
spark-3.0.1-bin-hadoop2.7/jars/hadoop-client-2.7.4.jar
spark-3.0.1-bin-hadoop2.7/jars/mesos-1.4.0-shaded-protobuf.jar
spark-3.0.1-bin-hadoop2.7/jars/orc-core-1.5.10.jar
spark-3.0.1-bin-hadoop2.7/jars/commons-configuration-1.6.jar
spark-3.0.1-bin-hadoop2.7/jars/chill_2.12-0.9.5.jar
spark-3.0.1-bin-hadoop2.7/jars/hadoop-yarn-api-2.7.4.jar
spark-3.0.1-bin-hadoop2.7/jars/leveldbjni-all-1.8.jar
spark-3.0.1-bin-hadoop2.7/jars/kryo-shaded-4.0.2.jar
spark-3.0.1-bin-hadoop2.7/jars/jackson-annotations-2.10.0.jar
spark-3.0.1-bin-hadoop2.7/jars/hk2-api-2.6.1.jar
spark-3.0.1-bin-hadoop2.7/jars/hadoop-annotations-2.7.4.jar
spark-3.0.1-bin-hadoop2.7/jars/hadoop-yarn-client-2.7.4.jar
spark-3.0.1-bin-hadoop2.7/jars/hk2-locator-2.6.1.jar
spark-3.0.1-bin-hadoop2.7/jars/commons-beanutils-1.9.4.jar
spark-3.0.1-bin-hadoop2.7/jars/osgi-resource-locator-1.0.3.jar
spark-3.0.1-bin-hadoop2.7/jars/antlr4-runtime-4.7.1.jar
spark-3.0.1-bin-hadoop2.7/jars/jersey-client-2.30.jar
spark-3.0.1-bin-hadoop2.7/jars/json4s-scalap_2.12-3.6.6.jar
spark-3.0.1-bin-hadoop2.7/jars/joda-time-2.10.5.jar
spark-3.0.1-bin-hadoop2.7/jars/okio-1.15.0.jar
spark-3.0.1-bin-hadoop2.7/jars/libthrift-0.12.0.jar
spark-3.0.1-bin-hadoop2.7/jars/hadoop-yarn-server-web-proxy-2.7.4.jar
spark-3.0.1-bin-hadoop2.7/jars/gson-2.2.4.jar
spark-3.0.1-bin-hadoop2.7/jars/jta-1.1.jar
spark-3.0.1-bin-hadoop2.7/jars/parquet-jackson-1.10.1.jar
spark-3.0.1-bin-hadoop2.7/jars/super-csv-2.2.0.jar
spark-3.0.1-bin-hadoop2.7/jars/commons-httpclient-3.1.jar
spark-3.0.1-bin-hadoop2.7/jars/javax.jdo-3.2.0-m3.jar
spark-3.0.1-bin-hadoop2.7/jars/httpclient-4.5.6.jar
spark-3.0.1-bin-hadoop2.7/jars/datanucleus-api-jdo-4.2.4.jar
spark-3.0.1-bin-hadoop2.7/jars/aopalliance-1.0.jar
spark-3.0.1-bin-hadoop2.7/jars/commons-digester-1.8.jar
spark-3.0.1-bin-hadoop2.7/jars/hadoop-yarn-common-2.7.4.jar
spark-3.0.1-bin-hadoop2.7/jars/jetty-6.1.26.jar
spark-3.0.1-bin-hadoop2.7/jars/slf4j-api-1.7.30.jar
spark-3.0.1-bin-hadoop2.7/jars/univocity-parsers-2.9.0.jar
spark-3.0.1-bin-hadoop2.7/jars/scala-compiler-2.12.10.jar
spark-3.0.1-bin-hadoop2.7/jars/transaction-api-1.1.jar
spark-3.0.1-bin-hadoop2.7/jars/curator-client-2.7.1.jar
spark-3.0.1-bin-hadoop2.7/jars/hive-serde-2.3.7.jar
spark-3.0.1-bin-hadoop2.7/jars/JLargeArrays-1.5.jar
spark-3.0.1-bin-hadoop2.7/jars/libfb303-0.9.3.jar
spark-3.0.1-bin-hadoop2.7/jars/jakarta.ws.rs-api-2.1.6.jar
spark-3.0.1-bin-hadoop2.7/jars/hive-shims-0.23-2.3.7.jar
spark-3.0.1-bin-hadoop2.7/jars/snappy-java-1.1.7.5.jar
spark-3.0.1-bin-hadoop2.7/jars/compress-lzf-1.0.3.jar
spark-3.0.1-bin-hadoop2.7/jars/commons-io-2.4.jar
spark-3.0.1-bin-hadoop2.7/jars/hadoop-yarn-server-common-2.7.4.jar
spark-3.0.1-bin-hadoop2.7/jars/snakeyaml-1.24.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-hive-thriftserver_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/breeze-macros_2.12-1.0.jar
spark-3.0.1-bin-hadoop2.7/jars/metrics-json-4.1.1.jar
spark-3.0.1-bin-hadoop2.7/jars/hk2-utils-2.6.1.jar
spark-3.0.1-bin-hadoop2.7/jars/bonecp-0.8.0.RELEASE.jar
spark-3.0.1-bin-hadoop2.7/jars/automaton-1.11-8.jar
spark-3.0.1-bin-hadoop2.7/jars/avro-ipc-1.8.2.jar
spark-3.0.1-bin-hadoop2.7/jars/jetty-util-6.1.26.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-core_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/htrace-core-3.1.0-incubating.jar
spark-3.0.1-bin-hadoop2.7/jars/okhttp-3.12.6.jar
spark-3.0.1-bin-hadoop2.7/jars/jackson-datatype-jsr310-2.10.3.jar
spark-3.0.1-bin-hadoop2.7/jars/metrics-jvm-4.1.1.jar
spark-3.0.1-bin-hadoop2.7/jars/avro-mapred-1.8.2-hadoop2.jar
spark-3.0.1-bin-hadoop2.7/jars/guava-14.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/algebra_2.12-2.0.0-M2.jar
spark-3.0.1-bin-hadoop2.7/jars/protobuf-java-2.5.0.jar
spark-3.0.1-bin-hadoop2.7/jars/stream-2.9.6.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-tags_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/metrics-core-4.1.1.jar
spark-3.0.1-bin-hadoop2.7/jars/stax-api-1.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/jackson-module-scala_2.12-2.10.0.jar
spark-3.0.1-bin-hadoop2.7/jars/commons-cli-1.2.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-kvstore_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/aopalliance-repackaged-2.6.1.jar
spark-3.0.1-bin-hadoop2.7/jars/arrow-vector-0.15.1.jar
spark-3.0.1-bin-hadoop2.7/jars/datanucleus-core-4.1.17.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-network-shuffle_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/lz4-java-1.7.1.jar
spark-3.0.1-bin-hadoop2.7/jars/hive-jdbc-2.3.7.jar
spark-3.0.1-bin-hadoop2.7/jars/janino-3.0.16.jar
spark-3.0.1-bin-hadoop2.7/jars/jackson-jaxrs-1.9.13.jar
spark-3.0.1-bin-hadoop2.7/jars/ivy-2.4.0.jar
spark-3.0.1-bin-hadoop2.7/jars/commons-lang3-3.9.jar
spark-3.0.1-bin-hadoop2.7/jars/arpack_combined_all-0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-hive_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/xml-apis-1.4.01.jar
spark-3.0.1-bin-hadoop2.7/jars/stax-api-1.0-2.jar
spark-3.0.1-bin-hadoop2.7/jars/derby-10.12.1.1.jar
spark-3.0.1-bin-hadoop2.7/jars/commons-text-1.6.jar
spark-3.0.1-bin-hadoop2.7/jars/macro-compat_2.12-1.1.1.jar
spark-3.0.1-bin-hadoop2.7/jars/hive-beeline-2.3.7.jar
spark-3.0.1-bin-hadoop2.7/jars/slf4j-log4j12-1.7.30.jar
spark-3.0.1-bin-hadoop2.7/jars/scala-collection-compat_2.12-2.1.1.jar
spark-3.0.1-bin-hadoop2.7/jars/hive-llap-common-2.3.7.jar
spark-3.0.1-bin-hadoop2.7/jars/jakarta.xml.bind-api-2.3.2.jar
spark-3.0.1-bin-hadoop2.7/jars/hive-shims-common-2.3.7.jar
spark-3.0.1-bin-hadoop2.7/jars/generex-1.0.2.jar
spark-3.0.1-bin-hadoop2.7/jars/objenesis-2.5.1.jar
spark-3.0.1-bin-hadoop2.7/jars/commons-math3-3.4.1.jar
spark-3.0.1-bin-hadoop2.7/jars/metrics-graphite-4.1.1.jar
spark-3.0.1-bin-hadoop2.7/jars/logging-interceptor-3.12.6.jar
spark-3.0.1-bin-hadoop2.7/jars/commons-codec-1.10.jar
spark-3.0.1-bin-hadoop2.7/jars/HikariCP-2.5.1.jar
spark-3.0.1-bin-hadoop2.7/jars/jackson-core-asl-1.9.13.jar
spark-3.0.1-bin-hadoop2.7/jars/core-1.1.2.jar
spark-3.0.1-bin-hadoop2.7/jars/hadoop-mapreduce-client-jobclient-2.7.4.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-tags_2.12-3.0.1-tests.jar
spark-3.0.1-bin-hadoop2.7/jars/arrow-format-0.15.1.jar
spark-3.0.1-bin-hadoop2.7/jars/orc-shims-1.5.10.jar
spark-3.0.1-bin-hadoop2.7/jars/jdo-api-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/log4j-1.2.17.jar
spark-3.0.1-bin-hadoop2.7/jars/paranamer-2.8.jar
spark-3.0.1-bin-hadoop2.7/jars/jodd-core-3.5.2.jar
spark-3.0.1-bin-hadoop2.7/jars/kubernetes-model-4.9.2.jar
spark-3.0.1-bin-hadoop2.7/jars/curator-framework-2.7.1.jar
spark-3.0.1-bin-hadoop2.7/jars/spire-util_2.12-0.17.0-M1.jar
spark-3.0.1-bin-hadoop2.7/jars/jcl-over-slf4j-1.7.30.jar
spark-3.0.1-bin-hadoop2.7/jars/shapeless_2.12-2.3.3.jar
spark-3.0.1-bin-hadoop2.7/jars/hive-metastore-2.3.7.jar
spark-3.0.1-bin-hadoop2.7/jars/parquet-common-1.10.1.jar
spark-3.0.1-bin-hadoop2.7/jars/zstd-jni-1.4.4-3.jar
spark-3.0.1-bin-hadoop2.7/jars/hive-vector-code-gen-2.3.7.jar
spark-3.0.1-bin-hadoop2.7/jars/jakarta.validation-api-2.0.2.jar
spark-3.0.1-bin-hadoop2.7/jars/jersey-container-servlet-core-2.30.jar
spark-3.0.1-bin-hadoop2.7/jars/scala-parser-combinators_2.12-1.1.2.jar
spark-3.0.1-bin-hadoop2.7/jars/curator-recipes-2.7.1.jar
spark-3.0.1-bin-hadoop2.7/jars/javassist-3.25.0-GA.jar
spark-3.0.1-bin-hadoop2.7/jars/commons-lang-2.6.jar
spark-3.0.1-bin-hadoop2.7/jars/hive-shims-scheduler-2.3.7.jar
spark-3.0.1-bin-hadoop2.7/jars/spire-macros_2.12-0.17.0-M1.jar
spark-3.0.1-bin-hadoop2.7/jars/xercesImpl-2.12.0.jar
spark-3.0.1-bin-hadoop2.7/jars/parquet-format-2.4.0.jar
spark-3.0.1-bin-hadoop2.7/jars/commons-compiler-3.0.16.jar
spark-3.0.1-bin-hadoop2.7/jars/opencsv-2.3.jar
spark-3.0.1-bin-hadoop2.7/jars/guice-servlet-3.0.jar
spark-3.0.1-bin-hadoop2.7/jars/jakarta.annotation-api-1.3.5.jar
spark-3.0.1-bin-hadoop2.7/jars/jpam-1.1.jar
spark-3.0.1-bin-hadoop2.7/jars/py4j-0.10.9.jar
spark-3.0.1-bin-hadoop2.7/jars/istack-commons-runtime-3.0.8.jar
spark-3.0.1-bin-hadoop2.7/jars/spire-platform_2.12-0.17.0-M1.jar
spark-3.0.1-bin-hadoop2.7/jars/datanucleus-rdbms-4.1.19.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-repl_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-mesos_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/json4s-jackson_2.12-3.6.6.jar
spark-3.0.1-bin-hadoop2.7/jars/jackson-module-paranamer-2.10.0.jar
spark-3.0.1-bin-hadoop2.7/jars/jetty-sslengine-6.1.26.jar
spark-3.0.1-bin-hadoop2.7/jars/hive-cli-2.3.7.jar
spark-3.0.1-bin-hadoop2.7/jars/javax.inject-1.jar
spark-3.0.1-bin-hadoop2.7/jars/jersey-container-servlet-2.30.jar
spark-3.0.1-bin-hadoop2.7/jars/jersey-common-2.30.jar
spark-3.0.1-bin-hadoop2.7/jars/api-asn1-api-1.0.0-M20.jar
spark-3.0.1-bin-hadoop2.7/jars/commons-pool-1.5.4.jar
spark-3.0.1-bin-hadoop2.7/jars/shims-0.7.45.jar
spark-3.0.1-bin-hadoop2.7/jars/jackson-core-2.10.0.jar
spark-3.0.1-bin-hadoop2.7/jars/jline-2.14.6.jar
spark-3.0.1-bin-hadoop2.7/jars/jsp-api-2.1.jar
spark-3.0.1-bin-hadoop2.7/jars/jakarta.activation-api-1.2.1.jar
spark-3.0.1-bin-hadoop2.7/jars/httpcore-4.4.12.jar
spark-3.0.1-bin-hadoop2.7/jars/ST4-4.0.4.jar
spark-3.0.1-bin-hadoop2.7/jars/metrics-jmx-4.1.1.jar
spark-3.0.1-bin-hadoop2.7/jars/apacheds-i18n-2.0.0-M15.jar
spark-3.0.1-bin-hadoop2.7/jars/jackson-module-jaxb-annotations-2.10.0.jar
spark-3.0.1-bin-hadoop2.7/jars/jersey-hk2-2.30.jar
spark-3.0.1-bin-hadoop2.7/jars/hadoop-auth-2.7.4.jar
spark-3.0.1-bin-hadoop2.7/jars/orc-mapreduce-1.5.10.jar
spark-3.0.1-bin-hadoop2.7/jars/jersey-server-2.30.jar
spark-3.0.1-bin-hadoop2.7/jars/JTransforms-3.1.jar
spark-3.0.1-bin-hadoop2.7/jars/javax.servlet-api-3.1.0.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-graphx_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-unsafe_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/guice-3.0.jar
spark-3.0.1-bin-hadoop2.7/jars/arrow-memory-0.15.1.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-sketch_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/hive-exec-2.3.7-core.jar
spark-3.0.1-bin-hadoop2.7/jars/machinist_2.12-0.6.8.jar
spark-3.0.1-bin-hadoop2.7/jars/antlr-runtime-3.5.2.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-streaming_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/commons-net-3.1.jar
spark-3.0.1-bin-hadoop2.7/jars/audience-annotations-0.5.0.jar
spark-3.0.1-bin-hadoop2.7/jars/velocity-1.5.jar
spark-3.0.1-bin-hadoop2.7/jars/hive-storage-api-2.7.1.jar
spark-3.0.1-bin-hadoop2.7/jars/commons-compress-1.8.1.jar
spark-3.0.1-bin-hadoop2.7/jars/breeze_2.12-1.0.jar
spark-3.0.1-bin-hadoop2.7/jars/xmlenc-0.52.jar
spark-3.0.1-bin-hadoop2.7/jars/hadoop-mapreduce-client-core-2.7.4.jar
spark-3.0.1-bin-hadoop2.7/jars/netty-all-4.1.47.Final.jar
spark-3.0.1-bin-hadoop2.7/jars/zjsonpatch-0.3.0.jar
spark-3.0.1-bin-hadoop2.7/jars/chill-java-0.9.5.jar
spark-3.0.1-bin-hadoop2.7/jars/activation-1.1.1.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-mllib_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/dropwizard-metrics-hadoop-metrics2-reporter-0.1.2.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-launcher_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/api-util-1.0.0-M20.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-network-common_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/jackson-mapper-asl-1.9.13.jar
spark-3.0.1-bin-hadoop2.7/jars/oro-2.0.8.jar
spark-3.0.1-bin-hadoop2.7/jars/kubernetes-client-4.9.2.jar
spark-3.0.1-bin-hadoop2.7/jars/jsr305-3.0.0.jar
spark-3.0.1-bin-hadoop2.7/jars/jaxb-api-2.2.2.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-yarn_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-mllib-local_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/json4s-core_2.12-3.6.6.jar
spark-3.0.1-bin-hadoop2.7/jars/xz-1.5.jar
spark-3.0.1-bin-hadoop2.7/jars/zookeeper-3.4.14.jar
spark-3.0.1-bin-hadoop2.7/jars/threeten-extra-1.5.0.jar
spark-3.0.1-bin-hadoop2.7/jars/parquet-column-1.10.1.jar
spark-3.0.1-bin-hadoop2.7/jars/hadoop-mapreduce-client-shuffle-2.7.4.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-sql_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/jars/commons-crypto-1.0.0.jar
spark-3.0.1-bin-hadoop2.7/jars/javolution-5.5.1.jar
spark-3.0.1-bin-hadoop2.7/jars/aircompressor-0.10.jar
spark-3.0.1-bin-hadoop2.7/jars/scala-library-2.12.10.jar
spark-3.0.1-bin-hadoop2.7/jars/hadoop-mapreduce-client-app-2.7.4.jar
spark-3.0.1-bin-hadoop2.7/jars/hive-common-2.3.7.jar
spark-3.0.1-bin-hadoop2.7/jars/commons-dbcp-1.4.jar
spark-3.0.1-bin-hadoop2.7/jars/parquet-encoding-1.10.1.jar
spark-3.0.1-bin-hadoop2.7/jars/commons-collections-3.2.2.jar
spark-3.0.1-bin-hadoop2.7/jars/scala-xml_2.12-1.2.0.jar
spark-3.0.1-bin-hadoop2.7/jars/jackson-dataformat-yaml-2.10.0.jar
spark-3.0.1-bin-hadoop2.7/jars/cats-kernel_2.12-2.0.0-M4.jar
spark-3.0.1-bin-hadoop2.7/jars/scala-reflect-2.12.10.jar
spark-3.0.1-bin-hadoop2.7/jars/avro-1.8.2.jar
spark-3.0.1-bin-hadoop2.7/jars/minlog-1.3.0.jar
spark-3.0.1-bin-hadoop2.7/jars/spark-kubernetes_2.12-3.0.1.jar
spark-3.0.1-bin-hadoop2.7/python/
spark-3.0.1-bin-hadoop2.7/python/setup.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/functions.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/util.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/regression.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/evaluation.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/feature.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/base.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/tuning.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/clustering.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/stat.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/image.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/fpm.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/recommendation.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/pipeline.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/param/
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/param/_shared_params_code_gen.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/param/__init__.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/param/shared.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/common.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/linalg/
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/linalg/__init__.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/classification.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/tree.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/wrapper.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/__init__.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/tests/
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/tests/test_wrapper.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/tests/test_tuning.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/tests/test_base.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/tests/test_evaluation.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/tests/test_linalg.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/tests/test_image.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/tests/test_persistence.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/tests/test_feature.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/tests/test_param.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/tests/test_algorithms.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/tests/test_pipeline.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/tests/__init__.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/tests/test_training_summary.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/ml/tests/test_stat.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/statcounter.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/status.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/java_gateway.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/util.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/regression.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/evaluation.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/feature.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/clustering.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/stat/
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/stat/test.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/stat/_statistics.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/stat/distribution.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/stat/KernelDensity.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/stat/__init__.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/fpm.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/recommendation.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/common.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/linalg/
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/linalg/distributed.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/linalg/__init__.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/classification.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/tree.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/__init__.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/random.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/tests/
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/tests/test_util.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/tests/test_linalg.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/tests/test_feature.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/tests/test_algorithms.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/tests/__init__.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/tests/test_streaming_algorithms.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/mllib/tests/test_stat.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/resource.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/serializers.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/util.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/daemon.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/context.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/broadcast.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/streaming/
spark-3.0.1-bin-hadoop2.7/python/pyspark/streaming/util.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/streaming/listener.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/streaming/kinesis.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/streaming/context.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/streaming/dstream.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/streaming/__init__.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/streaming/tests/
spark-3.0.1-bin-hadoop2.7/python/pyspark/streaming/tests/test_kinesis.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/streaming/tests/test_context.py
spark-3.0.1-bin-hadoop2.7/python/pyspark/streaming/tests/test_dstream.py
spark-3.0.1-bin-hadoop2.7/pyt