Test Result : BiallelicGenotyperSuite

1 failures (+1) , 1 skipped (±0)
31 tests (+3)
Took 23 min.

All Tests

Test nameDurationStatus
build genotype for het snp1 msPassed
call het AG->A deletion at 1/9071701 min 15 secPassed
call het ATG->A deletion at 1/9051301 min 16 secPassed
call het ATG->A deletion at 1/905130 while scoring all sites1 min 20 secPassed
call het T->G snp at 1/2408981 min 16 secPassed
call het alt TTATA,TTA->T insertion at 1/52745471 min 14 secPassed
call hom alt ACAG->A deletion at 1/8860491 min 18 secPassed
call hom alt AGCCAGTGGACGCCGACCT->A deletion at 1/8751591 min 15 secPassed
call hom alt C->CCCCT insertion at 1/86651113 secPassed
call hom alt C->G snp at 1/8777151 min 14 secPassed
call hom alt CAG->C deletion at 1/10675961 min 17 secPassed
call hom alt GA->CC mnp at 1/889158–91 min 16 secPassed
call hom alt T->TAAA insertion at 1/41201851 min 15 secPassed
call hom alt TACACACACACACACACACACACACACACAC->T deletion at 1/17772631 min 15 secPassed
discover and call het and hom snps1 min 19 secPassed
discover and call short indel1 min 16 secPassed
discover and call simple SNP1 min 16 secPassed
discover and call simple SNP and score all sites1 min 15 secPassed
discover and force call hom alt deletion1 min 15 secPassed
fisher test for strand bias1 msPassed
force call possible STR/indel0 msSkipped
log space factorial0 msPassed
make het alt calls at biallelic snp locus1 min 15 secPassed
properly handle diploid genotype state with het call0 msPassed
properly handle haploid genotype state3 msPassed
properly handle triploid genotype state with hom alt call0 msPassed
score a single read covering a deletion1 secPassed
score snp in a read with evidence of the snp50 msPassed
score snp in a read with evidence of the snp, and non-variant bases64 msFailed
score snp in a read with no evidence of the snp3.5 secPassed
scoring read that overlaps no variants should return empty observations in variant only mode0 msPassed