Test Result

12 failures , 4 skipped
1,072 tests
Configuration NameDurationAllFailedSkipped
HADOOP_VERSION=2.3.0,SCALAVER=2.11,SPARK_VERSION=2.0.0,label=centos23 min26831
HADOOP_VERSION=2.3.0,SCALAVER=2.10,SPARK_VERSION=2.0.0,label=centos25 min26831
HADOOP_VERSION=2.6.0,SCALAVER=2.11,SPARK_VERSION=2.0.0,label=centos23 min26831
HADOOP_VERSION=2.6.0,SCALAVER=2.10,SPARK_VERSION=2.0.0,label=centos24 min26831

Failed Tests

HADOOP_VERSION=2.3.0,SCALAVER=2.11,SPARK_VERSION=2.0.0,label=centos

Test NameDurationAge
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.score snp in a read with evidence of the snp, and non-variant bases70 ms1
 org.bdgenomics.avocado.genotyping.DiscoverVariantsSuite.break TT->CA mnp into two snps2 ms1
 org.bdgenomics.avocado.util.HardFilterGenotypesSuite.discard a genotype whose quality is too low6 ms1

HADOOP_VERSION=2.3.0,SCALAVER=2.10,SPARK_VERSION=2.0.0,label=centos

Test NameDurationAge
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.score snp in a read with evidence of the snp, and non-variant bases80 ms1
 org.bdgenomics.avocado.genotyping.DiscoverVariantsSuite.break TT->CA mnp into two snps1 ms1
 org.bdgenomics.avocado.util.HardFilterGenotypesSuite.discard a genotype whose quality is too low6 ms1

HADOOP_VERSION=2.6.0,SCALAVER=2.11,SPARK_VERSION=2.0.0,label=centos

Test NameDurationAge
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.score snp in a read with evidence of the snp, and non-variant bases64 ms1
 org.bdgenomics.avocado.genotyping.DiscoverVariantsSuite.break TT->CA mnp into two snps1 ms1
 org.bdgenomics.avocado.util.HardFilterGenotypesSuite.discard a genotype whose quality is too low6 ms1

HADOOP_VERSION=2.6.0,SCALAVER=2.10,SPARK_VERSION=2.0.0,label=centos

Test NameDurationAge
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.score snp in a read with evidence of the snp, and non-variant bases73 ms1
 org.bdgenomics.avocado.genotyping.DiscoverVariantsSuite.break TT->CA mnp into two snps1 ms1
 org.bdgenomics.avocado.util.HardFilterGenotypesSuite.discard a genotype whose quality is too low5 ms1