Test Result : org.bdgenomics.avocado.genotyping

25 failures (+23) , 1 skipped (±0)
74 tests (-3)
Took 3 min 52 sec.

All Failed Tests

Test NameDurationAge
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het AG->A deletion at 1/90717027 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/90513026 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het T->G snp at 1/24089825 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het alt TTATA,TTA->T insertion at 1/527454722 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt ACAG->A deletion at 1/88604926 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt AGCCAGTGGACGCCGACCT->A deletion at 1/87515919 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->CCCCT insertion at 1/86651126 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->G snp at 1/87771521 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt CAG->C deletion at 1/106759626 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt GA->CC mnp at 1/889158–924 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt T->TAAA insertion at 1/412018524 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt TACACACACACACACACACACACACACACAC->T deletion at 1/177726345 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call het and hom snps51 sec1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and force call hom alt deletion32 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.make het alt calls at biallelic snp locus22 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.score a single read covering a deletion0.44 sec1
 org.bdgenomics.avocado.genotyping.DiscoverVariantsSuite.find deletion in reads23 ms1
 org.bdgenomics.avocado.genotyping.DiscoverVariantsSuite.find insertion in reads22 ms1
 org.bdgenomics.avocado.genotyping.DiscoverVariantsSuite.find one snp in reads with 1bp sequence mismatch28 ms1
 org.bdgenomics.avocado.genotyping.DiscoverVariantsSuite.find variants in alignment record rdd23 ms1
 org.bdgenomics.avocado.genotyping.DiscoverVariantsSuite.no variants in rdd with sequence match reads23 ms1
 org.bdgenomics.avocado.genotyping.DiscoverVariantsSuite.no variants in rdd with unaligned read68 ms1
 org.bdgenomics.avocado.genotyping.ObserverSuite.generate observations for a read with a deletion under diploid model2 ms1
 org.bdgenomics.avocado.genotyping.ObserverSuite.generate observations for a read with an insertion under diploid model27 ms1
 org.bdgenomics.avocado.genotyping.ObserverSuite.generate observations for a sequence match under diploid model32 ms1

All Tests

ClassDurationFail(diff)Skip(diff)Pass(diff)Total(diff)
BiallelicGenotyperSuite3 min 51 sec16+15111-1828-3
DiscoverVariantsSuite0.19 sec6+506-512
DiscoveredVariantSuite1 ms0011
JointAnnotatorCallerSuite44 ms001010
ObserverSuite61 ms3+301-34
TrioCallerSuite1 sec001313
VariantSummarySuite12 ms0066