Test Result : BiallelicGenotyperSuite

9 failures , 1 skipped
31 tests
Took 14 min.

All Tests

Test nameDurationStatus
build genotype for het snp1 msPassed
call het AG->A deletion at 1/90717071 msFailed
call het ATG->A deletion at 1/90513065 msFailed
call het ATG->A deletion at 1/905130 while scoring all sites58 msFailed
call het T->G snp at 1/24089877 msFailed
call het alt TTATA,TTA->T insertion at 1/527454764 msFailed
call hom alt ACAG->A deletion at 1/8860491 min 53 secPassed
call hom alt AGCCAGTGGACGCCGACCT->A deletion at 1/8751591 min 18 secPassed
call hom alt C->CCCCT insertion at 1/86651171 msFailed
call hom alt C->G snp at 1/8777151 min 17 secPassed
call hom alt CAG->C deletion at 1/10675961 min 18 secPassed
call hom alt GA->CC mnp at 1/889158–90.27 secFailed
call hom alt T->TAAA insertion at 1/41201850.26 secFailed
call hom alt TACACACACACACACACACACACACACACAC->T deletion at 1/17772631 min 20 secPassed
discover and call het and hom snps1 min 17 secPassed
discover and call short indel1 min 16 secFailed
discover and call simple SNP1 min 15 secPassed
discover and call simple SNP and score all sites1 min 15 secPassed
discover and force call hom alt deletion1 min 14 secPassed
fisher test for strand bias1 msPassed
force call possible STR/indel0 msSkipped
log space factorial0 msPassed
make het alt calls at biallelic snp locus1 min 16 secPassed
properly handle diploid genotype state with het call1 msPassed
properly handle haploid genotype state3 msPassed
properly handle triploid genotype state with hom alt call0 msPassed
score a single read covering a deletion1.1 secPassed
score snp in a read with evidence of the snp60 msPassed
score snp in a read with evidence of the snp, and non-variant bases0.1 secPassed
score snp in a read with no evidence of the snp3.7 secPassed
scoring read that overlaps no variants should return empty observations in variant only mode1 msPassed