Test Result

30 failures , 3 skipped
955 tests
Configuration NameDurationAllFailedSkipped
HADOOP_VERSION=2.6.0,SCALAVER=2.10,SPARK_VERSION=2.0.0,label=centos15 min277101
HADOOP_VERSION=2.6.0,SCALAVER=2.11,SPARK_VERSION=2.0.0,label=centos15 min277101
HADOOP_VERSION=2.3.0,SCALAVER=2.10,SPARK_VERSION=2.0.0,label=centos6.5 sec12400
HADOOP_VERSION=2.3.0,SCALAVER=2.11,SPARK_VERSION=2.0.0,label=centos17 min277101

Failed Tests

HADOOP_VERSION=2.6.0,SCALAVER=2.10,SPARK_VERSION=2.0.0,label=centos

Test NameDurationAge
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call short indel1 min 18 sec1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt GA->CC mnp at 1/889158–967 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->CCCCT insertion at 1/8665110.11 sec1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/90513055 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/905130 while scoring all sites57 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het AG->A deletion at 1/90717059 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het T->G snp at 1/2408980.14 sec1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt T->TAAA insertion at 1/412018553 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het alt TTATA,TTA->T insertion at 1/52745470.29 sec1
 org.bdgenomics.avocado.genotyping.SquareOffReferenceModelSuite.extract variants finds sites with a called alt86 ms1

HADOOP_VERSION=2.6.0,SCALAVER=2.11,SPARK_VERSION=2.0.0,label=centos

Test NameDurationAge
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call short indel1 min 16 sec1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt GA->CC mnp at 1/889158–90.27 sec1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->CCCCT insertion at 1/86651171 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/90513065 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/905130 while scoring all sites58 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het AG->A deletion at 1/90717071 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het T->G snp at 1/24089877 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt T->TAAA insertion at 1/41201850.26 sec1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het alt TTATA,TTA->T insertion at 1/527454764 ms1
 org.bdgenomics.avocado.genotyping.SquareOffReferenceModelSuite.extract variants finds sites with a called alt57 ms1

HADOOP_VERSION=2.3.0,SCALAVER=2.11,SPARK_VERSION=2.0.0,label=centos

Test NameDurationAge
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call short indel1 min 15 sec1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt GA->CC mnp at 1/889158–90.1 sec1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->CCCCT insertion at 1/8665110.11 sec1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/90513054 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/905130 while scoring all sites65 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het AG->A deletion at 1/90717059 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het T->G snp at 1/24089884 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt T->TAAA insertion at 1/412018557 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het alt TTATA,TTA->T insertion at 1/527454797 ms1
 org.bdgenomics.avocado.genotyping.SquareOffReferenceModelSuite.extract variants finds sites with a called alt59 ms1