Regression

org.bdgenomics.avocado.genotyping.ObserverSuite.generate observations for a read with an insertion under diploid model

Failing for the past 1 build (Since Failed#228 )
Took 7 ms.

Error Message

A master URL must be set in your configuration

Stacktrace

      org.apache.spark.SparkException: A master URL must be set in your configuration
      at org.apache.spark.SparkContext.<init>(SparkContext.scala:376)
      at org.apache.spark.SparkContext$.getOrCreate(SparkContext.scala:2509)
      at org.apache.spark.sql.SparkSession$Builder$$anonfun$6.apply(SparkSession.scala:909)
      at org.apache.spark.sql.SparkSession$Builder$$anonfun$6.apply(SparkSession.scala:901)
      at scala.Option.getOrElse(Option.scala:120)
      at org.apache.spark.sql.SparkSession$Builder.getOrCreate(SparkSession.scala:901)
      at org.apache.spark.sql.SQLContext$.getOrCreate(SQLContext.scala:1063)
      at org.bdgenomics.avocado.genotyping.ScoredObservation$.createScores(ScoredObservation.scala:106)
      at org.bdgenomics.avocado.genotyping.ObserverSuite.summaryObservations$lzycompute(ObserverSuite.scala:28)
      at org.bdgenomics.avocado.genotyping.ObserverSuite.summaryObservations(ObserverSuite.scala:28)
      at org.bdgenomics.avocado.genotyping.ObserverSuite$$anonfun$3$$anonfun$19.apply(ObserverSuite.scala:134)
      at org.bdgenomics.avocado.genotyping.ObserverSuite$$anonfun$3$$anonfun$19.apply(ObserverSuite.scala:134)
      at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:244)
      at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:244)
      at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
      at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47)
      at scala.collection.TraversableLike$class.map(TraversableLike.scala:244)
      at scala.collection.AbstractTraversable.map(Traversable.scala:105)
      at org.bdgenomics.avocado.genotyping.ObserverSuite$$anonfun$3.apply$mcV$sp(ObserverSuite.scala:134)
      at org.bdgenomics.avocado.genotyping.ObserverSuite$$anonfun$3.apply(ObserverSuite.scala:114)
      at org.bdgenomics.avocado.genotyping.ObserverSuite$$anonfun$3.apply(ObserverSuite.scala:114)
      at org.scalatest.Transformer$$anonfun$apply$1.apply$mcV$sp(Transformer.scala:22)
      at org.scalatest.OutcomeOf$class.outcomeOf(OutcomeOf.scala:85)
      at org.scalatest.OutcomeOf$.outcomeOf(OutcomeOf.scala:104)
      at org.scalatest.Transformer.apply(Transformer.scala:22)
      at org.scalatest.Transformer.apply(Transformer.scala:20)
      at org.scalatest.FunSuiteLike$$anon$1.apply(FunSuiteLike.scala:166)
      at org.scalatest.Suite$class.withFixture(Suite.scala:1122)
      at org.scalatest.FunSuite.withFixture(FunSuite.scala:1555)
      at org.scalatest.FunSuiteLike$class.invokeWithFixture$1(FunSuiteLike.scala:163)
      at org.scalatest.FunSuiteLike$$anonfun$runTest$1.apply(FunSuiteLike.scala:175)
      at org.scalatest.FunSuiteLike$$anonfun$runTest$1.apply(FunSuiteLike.scala:175)
      at org.scalatest.SuperEngine.runTestImpl(Engine.scala:306)
      at org.scalatest.FunSuiteLike$class.runTest(FunSuiteLike.scala:175)
      at org.bdgenomics.avocado.genotyping.ObserverSuite.org$scalatest$BeforeAndAfter$$super$runTest(ObserverSuite.scala:26)
      at org.scalatest.BeforeAndAfter$class.runTest(BeforeAndAfter.scala:200)
      at org.bdgenomics.avocado.genotyping.ObserverSuite.runTest(ObserverSuite.scala:26)
      at org.scalatest.FunSuiteLike$$anonfun$runTests$1.apply(FunSuiteLike.scala:208)
      at org.scalatest.FunSuiteLike$$anonfun$runTests$1.apply(FunSuiteLike.scala:208)
      at org.scalatest.SuperEngine$$anonfun$traverseSubNodes$1$1.apply(Engine.scala:413)
      at org.scalatest.SuperEngine$$anonfun$traverseSubNodes$1$1.apply(Engine.scala:401)
      at scala.collection.immutable.List.foreach(List.scala:318)
      at org.scalatest.SuperEngine.traverseSubNodes$1(Engine.scala:401)
      at org.scalatest.SuperEngine.org$scalatest$SuperEngine$$runTestsInBranch(Engine.scala:396)
      at org.scalatest.SuperEngine.runTestsImpl(Engine.scala:483)
      at org.scalatest.FunSuiteLike$class.runTests(FunSuiteLike.scala:208)
      at org.scalatest.FunSuite.runTests(FunSuite.scala:1555)
      at org.scalatest.Suite$class.run(Suite.scala:1424)
      at org.scalatest.FunSuite.org$scalatest$FunSuiteLike$$super$run(FunSuite.scala:1555)
      at org.scalatest.FunSuiteLike$$anonfun$run$1.apply(FunSuiteLike.scala:212)
      at org.scalatest.FunSuiteLike$$anonfun$run$1.apply(FunSuiteLike.scala:212)
      at org.scalatest.SuperEngine.runImpl(Engine.scala:545)
      at org.scalatest.FunSuiteLike$class.run(FunSuiteLike.scala:212)
      at org.bdgenomics.avocado.genotyping.ObserverSuite.org$scalatest$BeforeAndAfter$$super$run(ObserverSuite.scala:26)
      at org.scalatest.BeforeAndAfter$class.run(BeforeAndAfter.scala:241)
      at org.bdgenomics.avocado.genotyping.ObserverSuite.run(ObserverSuite.scala:26)
      at org.scalatest.Suite$class.callExecuteOnSuite$1(Suite.scala:1492)
      at org.scalatest.Suite$$anonfun$runNestedSuites$1.apply(Suite.scala:1528)
      at org.scalatest.Suite$$anonfun$runNestedSuites$1.apply(Suite.scala:1526)
      at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
      at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108)
      at org.scalatest.Suite$class.runNestedSuites(Suite.scala:1526)
      at org.scalatest.tools.DiscoverySuite.runNestedSuites(DiscoverySuite.scala:29)
      at org.scalatest.Suite$class.run(Suite.scala:1421)
      at org.scalatest.tools.DiscoverySuite.run(DiscoverySuite.scala:29)
      at org.scalatest.tools.SuiteRunner.run(SuiteRunner.scala:55)
      at org.scalatest.tools.Runner$$anonfun$doRunRunRunDaDoRunRun$3.apply(Runner.scala:2563)
      at org.scalatest.tools.Runner$$anonfun$doRunRunRunDaDoRunRun$3.apply(Runner.scala:2557)
      at scala.collection.immutable.List.foreach(List.scala:318)
      at org.scalatest.tools.Runner$.doRunRunRunDaDoRunRun(Runner.scala:2557)
      at org.scalatest.tools.Runner$$anonfun$runOptionallyWithPassFailReporter$2.apply(Runner.scala:1044)
      at org.scalatest.tools.Runner$$anonfun$runOptionallyWithPassFailReporter$2.apply(Runner.scala:1043)
      at org.scalatest.tools.Runner$.withClassLoaderAndDispatchReporter(Runner.scala:2722)
      at org.scalatest.tools.Runner$.runOptionallyWithPassFailReporter(Runner.scala:1043)
      at org.scalatest.tools.Runner$.main(Runner.scala:860)
      at org.scalatest.tools.Runner.main(Runner.scala)