Test Result : BiallelicGenotyperSuite

0 failures (-19) , 1 skipped (±0)
34 tests (±0)
Took 7 min 42 sec.

All Tests

Test nameDurationStatus
build genotype for het snp1 msPassed
call het AG->A deletion at 1/90717020 secFixed
call het ATG->A deletion at 1/90513022 secFixed
call het ATG->A deletion at 1/905130 while scoring all sites22 secFixed
call het T->G snp at 1/24089819 secFixed
call het alt TTATA,TTA->T insertion at 1/527454720 secFixed
call hom alt ACAG->A deletion at 1/88604926 secFixed
call hom alt AGCCAGTGGACGCCGACCT->A deletion at 1/87515924 secFixed
call hom alt C->CCCCT insertion at 1/86651118 secFixed
call hom alt C->G snp at 1/87771524 secFixed
call hom alt CAG->C deletion at 1/106759627 secFixed
call hom alt GA->CC mnp at 1/889158–921 secFixed
call hom alt T->TAAA insertion at 1/412018519 secFixed
call hom alt TACACACACACACACACACACACACACACAC->T deletion at 1/177726321 secFixed
discover and call het and hom snps27 secFixed
discover and call short indel26 secFixed
discover and call simple SNP22 secFixed
discover and call simple SNP and score all sites24 secFixed
discover and force call hom alt deletion23 secFixed
fisher test for strand bias1 msPassed
force call possible STR/indel0 msSkipped
log space factorial0 msPassed
make het alt calls at biallelic snp locus19 secPassed
properly handle diploid genotype state with het call0 msPassed
properly handle haploid genotype state3 msPassed
properly handle triploid genotype state with hom alt call0 msPassed
score a single read covering a deletion1.6 secFixed
score snp in a read with evidence of the snp0.13 secPassed
score snp in a read with evidence of the snp, and non-variant bases0.23 secPassed
score snp in a read with no evidence of the snp3.9 secPassed
score snps in a read overlapping a copy number del boundary8.8 secPassed
score snps in a read overlapping a copy number dup boundary13 secPassed
scoring read that overlaps no variants should return empty observations0 msPassed
scoring read that overlaps no variants should return empty observations in variant only mode4 msPassed