Test Result : BiallelicGenotyperSuite

0 failures (-19) , 1 skipped (±0)
34 tests (±0)
Took 6 min 36 sec.

All Tests

Test nameDurationStatus
build genotype for het snp2 msPassed
call het AG->A deletion at 1/90717017 secFixed
call het ATG->A deletion at 1/90513019 secFixed
call het ATG->A deletion at 1/905130 while scoring all sites17 secFixed
call het T->G snp at 1/24089818 secFixed
call het alt TTATA,TTA->T insertion at 1/527454716 secFixed
call hom alt ACAG->A deletion at 1/88604921 secFixed
call hom alt AGCCAGTGGACGCCGACCT->A deletion at 1/87515920 secFixed
call hom alt C->CCCCT insertion at 1/86651115 secFixed
call hom alt C->G snp at 1/87771519 secFixed
call hom alt CAG->C deletion at 1/106759624 secFixed
call hom alt GA->CC mnp at 1/889158–918 secFixed
call hom alt T->TAAA insertion at 1/412018516 secFixed
call hom alt TACACACACACACACACACACACACACACAC->T deletion at 1/177726317 secFixed
discover and call het and hom snps25 secFixed
discover and call short indel19 secFixed
discover and call simple SNP21 secFixed
discover and call simple SNP and score all sites20 secFixed
discover and force call hom alt deletion21 secFixed
fisher test for strand bias1 msPassed
force call possible STR/indel0 msSkipped
log space factorial0 msPassed
make het alt calls at biallelic snp locus18 secPassed
properly handle diploid genotype state with het call1 msPassed
properly handle haploid genotype state3 msPassed
properly handle triploid genotype state with hom alt call0 msPassed
score a single read covering a deletion1.6 secFixed
score snp in a read with evidence of the snp92 msPassed
score snp in a read with evidence of the snp, and non-variant bases0.15 secPassed
score snp in a read with no evidence of the snp3.5 secPassed
score snps in a read overlapping a copy number del boundary7.9 secPassed
score snps in a read overlapping a copy number dup boundary12 secPassed
scoring read that overlaps no variants should return empty observations0 msPassed
scoring read that overlaps no variants should return empty observations in variant only mode3 msPassed