Build 2.3.0,2.10,2.0.0,ubuntu (Nov 13, 2018 3:38:08 PM)

	No changes.
	Started by upstream project avocado-prb build number 237 originally caused by: GitHub pull request #307 of commit 9694465fd61467cc0b4bf518563a091e14be2404 automatically merged.
	Revision: 463dfedc7f7a836505ab7825e885dd972aec2fb3 origin/pr/307/merge
	Test Result (25 failures ) org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call simple SNP org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call simple SNP and score all sites org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call short indel org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call het and hom snps org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.score a single read covering a deletion org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and force call hom alt deletion org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt AGCCAGTGGACGCCGACCT->A deletion at 1/875159 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt TACACACACACACACACACACACACACACAC->T deletion at 1/1777263 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt CAG->C deletion at 1/1067596 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->G snp at 1/877715 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt ACAG->A deletion at 1/886049 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt GA->CC mnp at 1/889158–9 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->CCCCT insertion at 1/866511 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/905130 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/905130 while scoring all sites org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het AG->A deletion at 1/907170 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het T->G snp at 1/240898 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt T->TAAA insertion at 1/4120185 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het alt TTATA,TTA->T insertion at 1/5274547 org.bdgenomics.avocado.genotyping.SquareOffReferenceModelSuite.extract variants finds sites with a called alt org.bdgenomics.avocado.genotyping.TrioCallerSuite.end-to-end trio call test org.bdgenomics.avocado.realigner.RealignerSuite.one sample read should fail due to a repeat, all others should realign org.bdgenomics.avocado.util.HardFilterGenotypesSuite.test adding filters org.bdgenomics.avocado.util.HardLimiterSuite.apply hard limiting on a file that is wholly under the coverage limit org.bdgenomics.avocado.util.HardLimiterSuite.apply hard limiting on a file with sections over the coverage limit Show all failed tests >>>