Test Result

25 failures , 1 skipped
283 tests
Took 1 min 15 sec.

All Failed Tests

Test NameDurationAge
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call simple SNP0.13 sec1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call simple SNP and score all sites62 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call short indel67 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call het and hom snps46 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.score a single read covering a deletion51 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and force call hom alt deletion47 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt AGCCAGTGGACGCCGACCT->A deletion at 1/87515943 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt TACACACACACACACACACACACACACACAC->T deletion at 1/177726346 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt CAG->C deletion at 1/106759643 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->G snp at 1/87771562 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt ACAG->A deletion at 1/88604974 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt GA->CC mnp at 1/889158–90.12 sec1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->CCCCT insertion at 1/86651177 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/90513059 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/905130 while scoring all sites65 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het AG->A deletion at 1/90717081 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het T->G snp at 1/24089862 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt T->TAAA insertion at 1/412018558 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het alt TTATA,TTA->T insertion at 1/527454746 ms1
 org.bdgenomics.avocado.genotyping.SquareOffReferenceModelSuite.extract variants finds sites with a called alt56 ms1
 org.bdgenomics.avocado.genotyping.TrioCallerSuite.end-to-end trio call test0.14 sec1
 org.bdgenomics.avocado.realigner.RealignerSuite.one sample read should fail due to a repeat, all others should realign0.2 sec1
 org.bdgenomics.avocado.util.HardFilterGenotypesSuite.test adding filters55 ms1
 org.bdgenomics.avocado.util.HardLimiterSuite.apply hard limiting on a file that is wholly under the coverage limit0.29 sec1
 org.bdgenomics.avocado.util.HardLimiterSuite.apply hard limiting on a file with sections over the coverage limit0.1 sec1

All Tests

PackageDurationFail(diff)Skip(diff)Pass(diff)Total(diff)
org.bdgenomics.avocado.genotyping1 min 5 sec21+211+167+6789+89
org.bdgenomics.avocado.models0.82 sec0045+4545+45
org.bdgenomics.avocado.realigner1.1 sec1+1070+7071+71
org.bdgenomics.avocado.util8.5 sec3+3075+7578+78