Test Result : BiallelicGenotyperSuite

19 failures , 1 skipped
34 tests
Took 51 sec.

All Tests

Test nameDurationStatus
build genotype for het snp0 msPassed
call het AG->A deletion at 1/90717081 msFailed
call het ATG->A deletion at 1/90513059 msFailed
call het ATG->A deletion at 1/905130 while scoring all sites65 msFailed
call het T->G snp at 1/24089862 msFailed
call het alt TTATA,TTA->T insertion at 1/527454746 msFailed
call hom alt ACAG->A deletion at 1/88604974 msFailed
call hom alt AGCCAGTGGACGCCGACCT->A deletion at 1/87515943 msFailed
call hom alt C->CCCCT insertion at 1/86651177 msFailed
call hom alt C->G snp at 1/87771562 msFailed
call hom alt CAG->C deletion at 1/106759643 msFailed
call hom alt GA->CC mnp at 1/889158–90.12 secFailed
call hom alt T->TAAA insertion at 1/412018558 msFailed
call hom alt TACACACACACACACACACACACACACACAC->T deletion at 1/177726346 msFailed
discover and call het and hom snps46 msFailed
discover and call short indel67 msFailed
discover and call simple SNP0.13 secFailed
discover and call simple SNP and score all sites62 msFailed
discover and force call hom alt deletion47 msFailed
fisher test for strand bias0 msPassed
force call possible STR/indel0 msSkipped
log space factorial0 msPassed
make het alt calls at biallelic snp locus25 secPassed
properly handle diploid genotype state with het call0 msPassed
properly handle haploid genotype state7 msPassed
properly handle triploid genotype state with hom alt call1 msPassed
score a single read covering a deletion51 msFailed
score snp in a read with evidence of the snp41 msPassed
score snp in a read with evidence of the snp, and non-variant bases57 msPassed
score snp in a read with no evidence of the snp3 secPassed
score snps in a read overlapping a copy number del boundary8.6 secPassed
score snps in a read overlapping a copy number dup boundary13 secPassed
scoring read that overlaps no variants should return empty observations0 msPassed
scoring read that overlaps no variants should return empty observations in variant only mode1 msPassed