Test Result : org.bdgenomics.avocado.genotyping

21 failures , 1 skipped
89 tests
Took 1 min 0 sec.

All Failed Tests

Test NameDurationAge
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het AG->A deletion at 1/90717086 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/90513074 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/905130 while scoring all sites83 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het T->G snp at 1/24089898 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het alt TTATA,TTA->T insertion at 1/527454766 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt ACAG->A deletion at 1/88604996 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt AGCCAGTGGACGCCGACCT->A deletion at 1/87515990 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->CCCCT insertion at 1/86651177 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->G snp at 1/87771587 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt CAG->C deletion at 1/106759661 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt GA->CC mnp at 1/889158–976 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt T->TAAA insertion at 1/412018568 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt TACACACACACACACACACACACACACACAC->T deletion at 1/177726383 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call het and hom snps79 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call short indel76 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call simple SNP75 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call simple SNP and score all sites84 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and force call hom alt deletion69 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.score a single read covering a deletion80 ms1
 org.bdgenomics.avocado.genotyping.SquareOffReferenceModelSuite.extract variants finds sites with a called alt38 ms1
 org.bdgenomics.avocado.genotyping.TrioCallerSuite.end-to-end trio call test0.12 sec1

All Tests

ClassDurationFail(diff)Skip(diff)Pass(diff)Total(diff)
BiallelicGenotyperSuite47 sec19+191+114+1434+34
DiscoverVariantsSuite9.4 sec0012+1212+12
DiscoveredVariantSuite1 ms001+11+1
JointAnnotatorCallerSuite58 ms0010+1010+10
ObserverSuite3.3 sec004+44+4
SquareOffReferenceModelSuite44 ms1+108+89+9
TrioCallerSuite0.35 sec1+1012+1213+13
VariantSummarySuite8 ms006+66+6