Test Result : BiallelicGenotyperSuite

19 failures , 1 skipped
34 tests
Took 47 sec.

All Tests

Test nameDurationStatus
build genotype for het snp1 msPassed
call het AG->A deletion at 1/90717086 msFailed
call het ATG->A deletion at 1/90513074 msFailed
call het ATG->A deletion at 1/905130 while scoring all sites83 msFailed
call het T->G snp at 1/24089898 msFailed
call het alt TTATA,TTA->T insertion at 1/527454766 msFailed
call hom alt ACAG->A deletion at 1/88604996 msFailed
call hom alt AGCCAGTGGACGCCGACCT->A deletion at 1/87515990 msFailed
call hom alt C->CCCCT insertion at 1/86651177 msFailed
call hom alt C->G snp at 1/87771587 msFailed
call hom alt CAG->C deletion at 1/106759661 msFailed
call hom alt GA->CC mnp at 1/889158–976 msFailed
call hom alt T->TAAA insertion at 1/412018568 msFailed
call hom alt TACACACACACACACACACACACACACACAC->T deletion at 1/177726383 msFailed
discover and call het and hom snps79 msFailed
discover and call short indel76 msFailed
discover and call simple SNP75 msFailed
discover and call simple SNP and score all sites84 msFailed
discover and force call hom alt deletion69 msFailed
fisher test for strand bias0 msPassed
force call possible STR/indel0 msSkipped
log space factorial1 msPassed
make het alt calls at biallelic snp locus19 secPassed
properly handle diploid genotype state with het call0 msPassed
properly handle haploid genotype state5 msPassed
properly handle triploid genotype state with hom alt call0 msPassed
score a single read covering a deletion80 msFailed
score snp in a read with evidence of the snp0.1 secPassed
score snp in a read with evidence of the snp, and non-variant bases98 msPassed
score snp in a read with no evidence of the snp3.1 secPassed
score snps in a read overlapping a copy number del boundary8.7 secPassed
score snps in a read overlapping a copy number dup boundary13 secPassed
scoring read that overlaps no variants should return empty observations0 msPassed
scoring read that overlaps no variants should return empty observations in variant only mode2 msPassed