Test Result : BiallelicGenotyperSuite

19 failures , 1 skipped
34 tests
Took 48 sec.

All Tests

Test nameDurationStatus
build genotype for het snp1 msPassed
call het AG->A deletion at 1/90717090 msFailed
call het ATG->A deletion at 1/90513069 msFailed
call het ATG->A deletion at 1/905130 while scoring all sites56 msFailed
call het T->G snp at 1/24089869 msFailed
call het alt TTATA,TTA->T insertion at 1/527454750 msFailed
call hom alt ACAG->A deletion at 1/88604967 msFailed
call hom alt AGCCAGTGGACGCCGACCT->A deletion at 1/87515959 msFailed
call hom alt C->CCCCT insertion at 1/86651162 msFailed
call hom alt C->G snp at 1/87771559 msFailed
call hom alt CAG->C deletion at 1/106759656 msFailed
call hom alt GA->CC mnp at 1/889158–973 msFailed
call hom alt T->TAAA insertion at 1/412018551 msFailed
call hom alt TACACACACACACACACACACACACACACAC->T deletion at 1/177726357 msFailed
discover and call het and hom snps69 msFailed
discover and call short indel57 msFailed
discover and call simple SNP71 msFailed
discover and call simple SNP and score all sites58 msFailed
discover and force call hom alt deletion86 msFailed
fisher test for strand bias0 msPassed
force call possible STR/indel0 msSkipped
log space factorial0 msPassed
make het alt calls at biallelic snp locus21 secPassed
properly handle diploid genotype state with het call0 msPassed
properly handle haploid genotype state7 msPassed
properly handle triploid genotype state with hom alt call1 msPassed
score a single read covering a deletion54 msFailed
score snp in a read with evidence of the snp56 msPassed
score snp in a read with evidence of the snp, and non-variant bases67 msPassed
score snp in a read with no evidence of the snp2.9 secPassed
score snps in a read overlapping a copy number del boundary8.4 secPassed
score snps in a read overlapping a copy number dup boundary14 secPassed
scoring read that overlaps no variants should return empty observations0 msPassed
scoring read that overlaps no variants should return empty observations in variant only mode2 msPassed