Test Result

25 failures , 1 skipped
283 tests
Took 1 min 7 sec.

All Failed Tests

Test NameDurationAge
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call simple SNP98 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call simple SNP and score all sites80 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call short indel48 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call het and hom snps58 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.score a single read covering a deletion53 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and force call hom alt deletion51 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt AGCCAGTGGACGCCGACCT->A deletion at 1/87515957 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt TACACACACACACACACACACACACACACAC->T deletion at 1/177726349 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt CAG->C deletion at 1/106759648 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->G snp at 1/87771549 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt ACAG->A deletion at 1/88604999 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt GA->CC mnp at 1/889158–948 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->CCCCT insertion at 1/86651147 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/90513048 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/905130 while scoring all sites46 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het AG->A deletion at 1/90717053 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het T->G snp at 1/24089846 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt T->TAAA insertion at 1/412018570 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het alt TTATA,TTA->T insertion at 1/527454765 ms1
 org.bdgenomics.avocado.genotyping.SquareOffReferenceModelSuite.extract variants finds sites with a called alt46 ms1
 org.bdgenomics.avocado.genotyping.TrioCallerSuite.end-to-end trio call test0.15 sec1
 org.bdgenomics.avocado.realigner.RealignerSuite.one sample read should fail due to a repeat, all others should realign0.13 sec1
 org.bdgenomics.avocado.util.HardFilterGenotypesSuite.test adding filters61 ms1
 org.bdgenomics.avocado.util.HardLimiterSuite.apply hard limiting on a file that is wholly under the coverage limit0.24 sec1
 org.bdgenomics.avocado.util.HardLimiterSuite.apply hard limiting on a file with sections over the coverage limit0.11 sec1

All Tests

PackageDurationFail(diff)Skip(diff)Pass(diff)Total(diff)
org.bdgenomics.avocado.genotyping58 sec21+211+167+6789+89
org.bdgenomics.avocado.models0.62 sec0045+4545+45
org.bdgenomics.avocado.realigner1 sec1+1070+7071+71
org.bdgenomics.avocado.util7.9 sec3+3075+7578+78