Test Result : BiallelicGenotyperSuite

19 failures , 1 skipped
34 tests
Took 45 sec.

All Tests

Test nameDurationStatus
build genotype for het snp1 msPassed
call het AG->A deletion at 1/90717053 msFailed
call het ATG->A deletion at 1/90513048 msFailed
call het ATG->A deletion at 1/905130 while scoring all sites46 msFailed
call het T->G snp at 1/24089846 msFailed
call het alt TTATA,TTA->T insertion at 1/527454765 msFailed
call hom alt ACAG->A deletion at 1/88604999 msFailed
call hom alt AGCCAGTGGACGCCGACCT->A deletion at 1/87515957 msFailed
call hom alt C->CCCCT insertion at 1/86651147 msFailed
call hom alt C->G snp at 1/87771549 msFailed
call hom alt CAG->C deletion at 1/106759648 msFailed
call hom alt GA->CC mnp at 1/889158–948 msFailed
call hom alt T->TAAA insertion at 1/412018570 msFailed
call hom alt TACACACACACACACACACACACACACACAC->T deletion at 1/177726349 msFailed
discover and call het and hom snps58 msFailed
discover and call short indel48 msFailed
discover and call simple SNP98 msFailed
discover and call simple SNP and score all sites80 msFailed
discover and force call hom alt deletion51 msFailed
fisher test for strand bias1 msPassed
force call possible STR/indel0 msSkipped
log space factorial0 msPassed
make het alt calls at biallelic snp locus20 secPassed
properly handle diploid genotype state with het call0 msPassed
properly handle haploid genotype state7 msPassed
properly handle triploid genotype state with hom alt call1 msPassed
score a single read covering a deletion53 msFailed
score snp in a read with evidence of the snp47 msPassed
score snp in a read with evidence of the snp, and non-variant bases68 msPassed
score snp in a read with no evidence of the snp3.1 secPassed
score snps in a read overlapping a copy number del boundary8.3 secPassed
score snps in a read overlapping a copy number dup boundary12 secPassed
scoring read that overlaps no variants should return empty observations0 msPassed
scoring read that overlaps no variants should return empty observations in variant only mode2 msPassed