Test Result

100 failures , 4 skipped
1,132 tests
Configuration NameDurationAllFailedSkipped
HADOOP_VERSION=2.6.0,SCALAVER=2.10,SPARK_VERSION=2.0.0,label=ubuntu1 min 10 sec283251
HADOOP_VERSION=2.3.0,SCALAVER=2.10,SPARK_VERSION=2.0.0,label=ubuntu1 min 15 sec283251
HADOOP_VERSION=2.3.0,SCALAVER=2.11,SPARK_VERSION=2.0.0,label=ubuntu1 min 9 sec283251
HADOOP_VERSION=2.6.0,SCALAVER=2.11,SPARK_VERSION=2.0.0,label=ubuntu1 min 7 sec283251

Failed Tests

HADOOP_VERSION=2.6.0,SCALAVER=2.10,SPARK_VERSION=2.0.0,label=ubuntu

Test NameDurationAge
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call simple SNP71 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call simple SNP and score all sites58 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call short indel57 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call het and hom snps69 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.score a single read covering a deletion54 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and force call hom alt deletion86 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt AGCCAGTGGACGCCGACCT->A deletion at 1/87515959 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt TACACACACACACACACACACACACACACAC->T deletion at 1/177726357 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt CAG->C deletion at 1/106759656 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->G snp at 1/87771559 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt ACAG->A deletion at 1/88604967 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt GA->CC mnp at 1/889158–973 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->CCCCT insertion at 1/86651162 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/90513069 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/905130 while scoring all sites56 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het AG->A deletion at 1/90717090 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het T->G snp at 1/24089869 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt T->TAAA insertion at 1/412018551 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het alt TTATA,TTA->T insertion at 1/527454750 ms1
 org.bdgenomics.avocado.genotyping.SquareOffReferenceModelSuite.extract variants finds sites with a called alt39 ms1
 org.bdgenomics.avocado.genotyping.TrioCallerSuite.end-to-end trio call test0.14 sec1
 org.bdgenomics.avocado.realigner.RealignerSuite.one sample read should fail due to a repeat, all others should realign0.17 sec1
 org.bdgenomics.avocado.util.HardFilterGenotypesSuite.test adding filters82 ms1
 org.bdgenomics.avocado.util.HardLimiterSuite.apply hard limiting on a file that is wholly under the coverage limit0.23 sec1
 org.bdgenomics.avocado.util.HardLimiterSuite.apply hard limiting on a file with sections over the coverage limit88 ms1

HADOOP_VERSION=2.3.0,SCALAVER=2.10,SPARK_VERSION=2.0.0,label=ubuntu

Test NameDurationAge
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call simple SNP0.13 sec1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call simple SNP and score all sites62 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call short indel67 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call het and hom snps46 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.score a single read covering a deletion51 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and force call hom alt deletion47 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt AGCCAGTGGACGCCGACCT->A deletion at 1/87515943 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt TACACACACACACACACACACACACACACAC->T deletion at 1/177726346 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt CAG->C deletion at 1/106759643 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->G snp at 1/87771562 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt ACAG->A deletion at 1/88604974 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt GA->CC mnp at 1/889158–90.12 sec1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->CCCCT insertion at 1/86651177 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/90513059 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/905130 while scoring all sites65 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het AG->A deletion at 1/90717081 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het T->G snp at 1/24089862 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt T->TAAA insertion at 1/412018558 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het alt TTATA,TTA->T insertion at 1/527454746 ms1
 org.bdgenomics.avocado.genotyping.SquareOffReferenceModelSuite.extract variants finds sites with a called alt56 ms1
 org.bdgenomics.avocado.genotyping.TrioCallerSuite.end-to-end trio call test0.14 sec1
 org.bdgenomics.avocado.realigner.RealignerSuite.one sample read should fail due to a repeat, all others should realign0.2 sec1
 org.bdgenomics.avocado.util.HardFilterGenotypesSuite.test adding filters55 ms1
 org.bdgenomics.avocado.util.HardLimiterSuite.apply hard limiting on a file that is wholly under the coverage limit0.29 sec1
 org.bdgenomics.avocado.util.HardLimiterSuite.apply hard limiting on a file with sections over the coverage limit0.1 sec1

HADOOP_VERSION=2.3.0,SCALAVER=2.11,SPARK_VERSION=2.0.0,label=ubuntu

Test NameDurationAge
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call simple SNP75 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call simple SNP and score all sites84 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call short indel76 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call het and hom snps79 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.score a single read covering a deletion80 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and force call hom alt deletion69 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt AGCCAGTGGACGCCGACCT->A deletion at 1/87515990 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt TACACACACACACACACACACACACACACAC->T deletion at 1/177726383 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt CAG->C deletion at 1/106759661 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->G snp at 1/87771587 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt ACAG->A deletion at 1/88604996 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt GA->CC mnp at 1/889158–976 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->CCCCT insertion at 1/86651177 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/90513074 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/905130 while scoring all sites83 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het AG->A deletion at 1/90717086 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het T->G snp at 1/24089898 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt T->TAAA insertion at 1/412018568 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het alt TTATA,TTA->T insertion at 1/527454766 ms1
 org.bdgenomics.avocado.genotyping.SquareOffReferenceModelSuite.extract variants finds sites with a called alt38 ms1
 org.bdgenomics.avocado.genotyping.TrioCallerSuite.end-to-end trio call test0.12 sec1
 org.bdgenomics.avocado.realigner.RealignerSuite.one sample read should fail due to a repeat, all others should realign0.11 sec1
 org.bdgenomics.avocado.util.HardFilterGenotypesSuite.test adding filters62 ms1
 org.bdgenomics.avocado.util.HardLimiterSuite.apply hard limiting on a file that is wholly under the coverage limit0.26 sec1
 org.bdgenomics.avocado.util.HardLimiterSuite.apply hard limiting on a file with sections over the coverage limit84 ms1

HADOOP_VERSION=2.6.0,SCALAVER=2.11,SPARK_VERSION=2.0.0,label=ubuntu

Test NameDurationAge
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call simple SNP98 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call simple SNP and score all sites80 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call short indel48 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and call het and hom snps58 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.score a single read covering a deletion53 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.discover and force call hom alt deletion51 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt AGCCAGTGGACGCCGACCT->A deletion at 1/87515957 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt TACACACACACACACACACACACACACACAC->T deletion at 1/177726349 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt CAG->C deletion at 1/106759648 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->G snp at 1/87771549 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt ACAG->A deletion at 1/88604999 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt GA->CC mnp at 1/889158–948 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt C->CCCCT insertion at 1/86651147 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/90513048 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het ATG->A deletion at 1/905130 while scoring all sites46 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het AG->A deletion at 1/90717053 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het T->G snp at 1/24089846 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call hom alt T->TAAA insertion at 1/412018570 ms1
 org.bdgenomics.avocado.genotyping.BiallelicGenotyperSuite.call het alt TTATA,TTA->T insertion at 1/527454765 ms1
 org.bdgenomics.avocado.genotyping.SquareOffReferenceModelSuite.extract variants finds sites with a called alt46 ms1
 org.bdgenomics.avocado.genotyping.TrioCallerSuite.end-to-end trio call test0.15 sec1
 org.bdgenomics.avocado.realigner.RealignerSuite.one sample read should fail due to a repeat, all others should realign0.13 sec1
 org.bdgenomics.avocado.util.HardFilterGenotypesSuite.test adding filters61 ms1
 org.bdgenomics.avocado.util.HardLimiterSuite.apply hard limiting on a file that is wholly under the coverage limit0.24 sec1
 org.bdgenomics.avocado.util.HardLimiterSuite.apply hard limiting on a file with sections over the coverage limit0.11 sec1