Started by upstream project "bdg-utils-prb" build number 168 originally caused by: GitHub pull request #167 of commit cfca1085857a5d8e52aaaf40f6342db9442f8cd9 automatically merged. [EnvInject] - Loading node environment variables. Building remotely on research-jenkins-worker-07 (research-07 ubuntu) in workspace /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu Cloning the remote Git repository Cloning repository https://github.com/bigdatagenomics/utils.git > git init /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu # timeout=10 Fetching upstream changes from https://github.com/bigdatagenomics/utils.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/utils.git +refs/heads/*:refs/remotes/origin/* > git config remote.origin.url https://github.com/bigdatagenomics/utils.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/utils.git # timeout=10 Fetching upstream changes from https://github.com/bigdatagenomics/utils.git > git fetch --tags --progress https://github.com/bigdatagenomics/utils.git +refs/pull/*:refs/remotes/origin/pr/* Checking out Revision 928d45dfeeff9b7bd53024297720ab7a14fbf969 (origin/pr/167/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 928d45dfeeff9b7bd53024297720ab7a14fbf969 First time build. Skipping changelog. [EnvInject] - Executing scripts and injecting environment variables after the SCM step. [EnvInject] - Injecting as environment variables the properties content JAVA_HOME=/usr/lib/jvm/java-8-oracle [EnvInject] - Variables injected successfully. [ubuntu] $ /bin/bash /tmp/hudson8413138365377028514.sh + set -e + export JAVA_HOME=/usr/lib/jvm/java-8-oracle + JAVA_HOME=/usr/lib/jvm/java-8-oracle + export PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games + PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games + ./scripts/jenkins-test # make a tempdir for writing maven cruft to UTILS_MVN_TMP_DIR=$(mktemp -d -t utilsTestMvnXXXXXXX) mktemp -d -t utilsTestMvnXXXXXXX ++ mktemp -d -t utilsTestMvnXXXXXXX + UTILS_MVN_TMP_DIR=/tmp/utilsTestMvnR3dyJFN # add this tempdir to the poms... find . -name pom.xml \ -exec sed -i.bak \ -e "s:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=${UTILS_MVN_TMP_DIR}:g" \ {} \; + find . -name pom.xml -exec sed -i.bak -e 's:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=/tmp/utilsTestMvnR3dyJFN:g' '{}' ';' find . -name "*.bak" -exec rm {} \; + find . -name '*.bak' -exec rm '{}' ';' # variable declarations export PATH=${JAVA_HOME}/bin/:${PATH} + export PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games + PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games export MAVEN_OPTS="-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8" + export 'MAVEN_OPTS=-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8' + MAVEN_OPTS='-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8' DIR=$( cd $( dirname ${BASH_SOURCE[0]} ) && pwd ) cd $( dirname ${BASH_SOURCE[0]} ) && pwd dirname ${BASH_SOURCE[0]} +++ dirname ./scripts/jenkins-test ++ cd ./scripts ++ pwd + DIR=/home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/scripts PROJECT_ROOT=${DIR}/.. + PROJECT_ROOT=/home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/scripts/.. VERSION=$(grep "<version>" ${PROJECT_ROOT}/pom.xml | head -2 | tail -1 | sed 's/ *<version>//g' | sed 's/<\/version>//g') grep "<version>" ${PROJECT_ROOT}/pom.xml | head -2 | tail -1 | sed 's/ *<version>//g' | sed 's/<\/version>//g' ++ grep '<version>' /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/scripts/../pom.xml ++ head -2 ++ tail -1 ++ sed 's/ *<version>//g' ++ sed 's/<\/version>//g' + VERSION=0.3.0-SNAPSHOT # is the hadoop version set? if ! [[ ${HADOOP_VERSION} ]]; then echo "HADOOP_VERSION environment variable is not set." echo "Please set this variable before running." exit 1 fi + [[ -n 2.7.5 ]] # is the spark version set? if ! [[ ${SPARK_VERSION} ]]; then echo "SPARK_VERSION environment variable is not set." echo "Please set this variable before running." exit 1 fi + [[ -n 2.4.0 ]] if [ ${SPARK_VERSION} == 3.0.0 ]; then ./scripts/move_to_spark_3.sh fi + '[' 2.4.0 == 3.0.0 ']' # is the scala version set? if ! [[ ${SCALA_VERSION} ]]; then echo "SCALA_VERSION environment variable is not set." echo "Please set this variable before running." exit 1 fi + [[ -n 2.11 ]] if [ ${SCALA_VERSION} == 2.11 ]; then # shouldn't be able to move to scala 2.11 twice set +e ./scripts/move_to_scala_2.11.sh if [[ $? == 0 ]]; then echo "We have already moved to Scala 2.11, so running move_to_scala_2.11.sh a second time should fail, but error code was 0 (success)." exit 1 fi set -e fi + '[' 2.11 == 2.11 ']' + set +e + ./scripts/move_to_scala_2.11.sh Scala version is already set to 2.11 (Scala artifacts have _2.11 version suffix in artifact name). Cowardly refusing to move to Scala 2.11 a second time... + [[ 1 == 0 ]] + set -e if [ ${SCALA_VERSION} == 2.12 ]; then ./scripts/move_to_scala_2.12.sh fi + '[' 2.11 == 2.12 ']' # print versions echo "Testing bdg-utils version ${VERSION} on Spark ${SPARK_VERSION} and Hadoop ${HADOOP_VERSION} and Scala ${SCALA_VERSION}" + echo 'Testing bdg-utils version 0.3.0-SNAPSHOT on Spark 2.4.0 and Hadoop 2.7.5 and Scala 2.11' Testing bdg-utils version 0.3.0-SNAPSHOT on Spark 2.4.0 and Hadoop 2.7.5 and Scala 2.11 # clean before building mvn clean + mvn clean Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0 [INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] utils [pom] [INFO] utils-misc-spark2_2.11: Miscellaneous Spark utility code [jar] [INFO] utils-minhash-spark2_2.11: MinHash-based Jaccard similarity estimator [jar] [INFO] utils-io-spark2_2.11: I/O utils [jar] [INFO] utils-statistics-spark2_2.11: Spark code for fitting statistical models [jar] [INFO] utils-cli-spark2_2.11: utilities for building command line applications [jar] [INFO] utils-serialization-spark2_2.11: tools for serializing data [jar] [INFO] utils-intervalrdd-spark2_2.11: IntervalRDD based on interval tree [jar] [INFO] [INFO] -----------< org.bdgenomics.utils:utils-parent-spark2_2.11 >------------ [INFO] Building utils 0.3.0-SNAPSHOT [1/8] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ utils-parent-spark2_2.11 --- [INFO] [INFO] ------------< org.bdgenomics.utils:utils-misc-spark2_2.11 >------------- [INFO] Building utils-misc-spark2_2.11: Miscellaneous Spark utility code 0.3.0-SNAPSHOT [2/8] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ utils-misc-spark2_2.11 --- [INFO] [INFO] -----------< org.bdgenomics.utils:utils-minhash-spark2_2.11 >----------- [INFO] Building utils-minhash-spark2_2.11: MinHash-based Jaccard similarity estimator 0.3.0-SNAPSHOT [3/8] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ utils-minhash-spark2_2.11 --- [INFO] [INFO] -------------< org.bdgenomics.utils:utils-io-spark2_2.11 >-------------- [INFO] Building utils-io-spark2_2.11: I/O utils 0.3.0-SNAPSHOT [4/8] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ utils-io-spark2_2.11 --- [INFO] [INFO] ---------< org.bdgenomics.utils:utils-statistics-spark2_2.11 >---------- [INFO] Building utils-statistics-spark2_2.11: Spark code for fitting statistical models 0.3.0-SNAPSHOT [5/8] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ utils-statistics-spark2_2.11 --- [INFO] [INFO] -------------< org.bdgenomics.utils:utils-cli-spark2_2.11 >------------- [INFO] Building utils-cli-spark2_2.11: utilities for building command line applications 0.3.0-SNAPSHOT [6/8] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ utils-cli-spark2_2.11 --- [INFO] [INFO] --------< org.bdgenomics.utils:utils-serialization-spark2_2.11 >-------- [INFO] Building utils-serialization-spark2_2.11: tools for serializing data 0.3.0-SNAPSHOT [7/8] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ utils-serialization-spark2_2.11 --- [INFO] [INFO] ---------< org.bdgenomics.utils:utils-intervalrdd-spark2_2.11 >--------- [INFO] Building utils-intervalrdd-spark2_2.11: IntervalRDD based on interval tree 0.3.0-SNAPSHOT [8/8] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ utils-intervalrdd-spark2_2.11 --- [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for utils 0.3.0-SNAPSHOT: [INFO] [INFO] utils .............................................. SUCCESS [ 0.246 s] [INFO] utils-misc-spark2_2.11: Miscellaneous Spark utility code SUCCESS [ 0.051 s] [INFO] utils-minhash-spark2_2.11: MinHash-based Jaccard similarity estimator SUCCESS [ 0.003 s] [INFO] utils-io-spark2_2.11: I/O utils .................... SUCCESS [ 0.003 s] [INFO] utils-statistics-spark2_2.11: Spark code for fitting statistical models SUCCESS [ 0.002 s] [INFO] utils-cli-spark2_2.11: utilities for building command line applications SUCCESS [ 0.003 s] [INFO] utils-serialization-spark2_2.11: tools for serializing data SUCCESS [ 0.002 s] [INFO] utils-intervalrdd-spark2_2.11: IntervalRDD based on interval tree SUCCESS [ 0.003 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 0.480 s [INFO] Finished at: 2020-06-21T13:59:03-07:00 [INFO] ------------------------------------------------------------------------ # if those pass, build the distribution package and the integration tests mvn -U test + mvn -U test Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0 [INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] utils [pom] [INFO] utils-misc-spark2_2.11: Miscellaneous Spark utility code [jar] [INFO] utils-minhash-spark2_2.11: MinHash-based Jaccard similarity estimator [jar] [INFO] utils-io-spark2_2.11: I/O utils [jar] [INFO] utils-statistics-spark2_2.11: Spark code for fitting statistical models [jar] [INFO] utils-cli-spark2_2.11: utilities for building command line applications [jar] [INFO] utils-serialization-spark2_2.11: tools for serializing data [jar] [INFO] utils-intervalrdd-spark2_2.11: IntervalRDD based on interval tree [jar] [INFO] [INFO] -----------< org.bdgenomics.utils:utils-parent-spark2_2.11 >------------ [INFO] Building utils 0.3.0-SNAPSHOT [1/8] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-parent-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-parent-spark2_2.11 --- [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-parent-spark2_2.11 --- [INFO] Modified 0 of 40 .scala files [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-parent-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-parent-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] ------------< org.bdgenomics.utils:utils-misc-spark2_2.11 >------------- [INFO] Building utils-misc-spark2_2.11: Miscellaneous Spark utility code 0.3.0-SNAPSHOT [2/8] [INFO] --------------------------------[ jar ]--------------------------------- Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-core_2.11/2.4.6/spark-core_2.11-2.4.6.pom Progress (1): 2.7/31 kB Progress (1): 5.5/31 kB Progress (1): 8.2/31 kB Progress (1): 11/31 kB Progress (1): 14/31 kB Progress (1): 16/31 kB Progress (1): 19/31 kB Progress (1): 22/31 kB Progress (1): 25/31 kB Progress (1): 27/31 kB Progress (1): 30/31 kB Progress (1): 31 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-core_2.11/2.4.6/spark-core_2.11-2.4.6.pom (31 kB at 148 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-parent_2.11/2.4.6/spark-parent_2.11-2.4.6.pom Progress (1): 2.7/105 kB Progress (1): 5.5/105 kB Progress (1): 8.2/105 kB Progress (1): 11/105 kB Progress (1): 14/105 kB Progress (1): 16/105 kB Progress (1): 19/105 kB Progress (1): 22/105 kB Progress (1): 25/105 kB Progress (1): 27/105 kB Progress (1): 30/105 kB Progress (1): 33/105 kB Progress (1): 36/105 kB Progress (1): 38/105 kB Progress (1): 41/105 kB Progress (1): 44/105 kB Progress (1): 47/105 kB Progress (1): 49/105 kB Progress (1): 52/105 kB Progress (1): 55/105 kB Progress (1): 58/105 kB Progress (1): 60/105 kB Progress (1): 63/105 kB Progress (1): 66/105 kB Progress (1): 69/105 kB Progress (1): 71/105 kB Progress (1): 74/105 kB Progress (1): 77/105 kB Progress (1): 80/105 kB Progress (1): 82/105 kB Progress (1): 85/105 kB Progress (1): 88/105 kB Progress (1): 90/105 kB Progress (1): 93/105 kB Progress (1): 96/105 kB Progress (1): 99/105 kB Progress (1): 101/105 kB Progress (1): 104/105 kB Progress (1): 105 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-parent_2.11/2.4.6/spark-parent_2.11-2.4.6.pom (105 kB at 2.8 MB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-launcher_2.11/2.4.6/spark-launcher_2.11-2.4.6.pom Progress (1): 2.7/7.0 kB Progress (1): 5.5/7.0 kB Progress (1): 7.0 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-launcher_2.11/2.4.6/spark-launcher_2.11-2.4.6.pom (7.0 kB at 540 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-tags_2.11/2.4.6/spark-tags_2.11-2.4.6.pom Progress (1): 2.6 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-tags_2.11/2.4.6/spark-tags_2.11-2.4.6.pom (2.6 kB at 219 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-kvstore_2.11/2.4.6/spark-kvstore_2.11-2.4.6.pom Progress (1): 2.7/4.7 kB Progress (1): 4.7 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-kvstore_2.11/2.4.6/spark-kvstore_2.11-2.4.6.pom (4.7 kB at 315 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-network-common_2.11/2.4.6/spark-network-common_2.11-2.4.6.pom Progress (1): 2.7/6.5 kB Progress (1): 5.5/6.5 kB Progress (1): 6.5 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-network-common_2.11/2.4.6/spark-network-common_2.11-2.4.6.pom (6.5 kB at 539 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-network-shuffle_2.11/2.4.6/spark-network-shuffle_2.11-2.4.6.pom Progress (1): 2.7/5.0 kB Progress (1): 5.0 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-network-shuffle_2.11/2.4.6/spark-network-shuffle_2.11-2.4.6.pom (5.0 kB at 314 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-unsafe_2.11/2.4.6/spark-unsafe_2.11-2.4.6.pom Progress (1): 2.7/4.8 kB Progress (1): 4.8 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-unsafe_2.11/2.4.6/spark-unsafe_2.11-2.4.6.pom (4.8 kB at 200 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-sql_2.11/2.4.6/spark-sql_2.11-2.4.6.pom Progress (1): 2.7/13 kB Progress (1): 5.5/13 kB Progress (1): 8.2/13 kB Progress (1): 11/13 kB Progress (1): 13 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-sql_2.11/2.4.6/spark-sql_2.11-2.4.6.pom (13 kB at 743 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-sketch_2.11/2.4.6/spark-sketch_2.11-2.4.6.pom Progress (1): 2.7/3.2 kB Progress (1): 3.2 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-sketch_2.11/2.4.6/spark-sketch_2.11-2.4.6.pom (3.2 kB at 288 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-catalyst_2.11/2.4.6/spark-catalyst_2.11-2.4.6.pom Progress (1): 2.7/8.7 kB Progress (1): 5.5/8.7 kB Progress (1): 8.2/8.7 kB Progress (1): 8.7 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-catalyst_2.11/2.4.6/spark-catalyst_2.11-2.4.6.pom (8.7 kB at 790 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-core_2.11/2.4.6/spark-core_2.11-2.4.6.jar Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-launcher_2.11/2.4.6/spark-launcher_2.11-2.4.6.jar Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-kvstore_2.11/2.4.6/spark-kvstore_2.11-2.4.6.jar Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-network-common_2.11/2.4.6/spark-network-common_2.11-2.4.6.jar Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-network-shuffle_2.11/2.4.6/spark-network-shuffle_2.11-2.4.6.jar Progress (1): 2.7/71 kB Progress (1): 5.5/71 kB Progress (1): 8.2/71 kB Progress (2): 8.2/71 kB | 2.7/57 kB Progress (2): 11/71 kB | 2.7/57 kB Progress (3): 11/71 kB | 2.7/57 kB | 2.7/76 kB Progress (3): 14/71 kB | 2.7/57 kB | 2.7/76 kB Progress (3): 14/71 kB | 5.5/57 kB | 2.7/76 kB Progress (3): 16/71 kB | 5.5/57 kB | 2.7/76 kB Progress (3): 16/71 kB | 5.5/57 kB | 5.5/76 kB Progress (3): 19/71 kB | 5.5/57 kB | 5.5/76 kB Progress (3): 19/71 kB | 5.5/57 kB | 8.2/76 kB Progress (3): 19/71 kB | 8.2/57 kB | 8.2/76 kB Progress (3): 19/71 kB | 8.2/57 kB | 11/76 kB Progress (3): 22/71 kB | 8.2/57 kB | 11/76 kB Progress (3): 22/71 kB | 8.2/57 kB | 14/76 kB Progress (3): 22/71 kB | 11/57 kB | 14/76 kB Progress (3): 22/71 kB | 11/57 kB | 16/76 kB Progress (3): 25/71 kB | 11/57 kB | 16/76 kB Progress (3): 25/71 kB | 11/57 kB | 19/76 kB Progress (3): 25/71 kB | 14/57 kB | 19/76 kB Progress (3): 25/71 kB | 14/57 kB | 22/76 kB Progress (3): 27/71 kB | 14/57 kB | 22/76 kB Progress (3): 27/71 kB | 16/57 kB | 22/76 kB Progress (3): 30/71 kB | 16/57 kB | 22/76 kB Progress (3): 30/71 kB | 16/57 kB | 25/76 kB Progress (3): 33/71 kB | 16/57 kB | 25/76 kB Progress (3): 33/71 kB | 19/57 kB | 25/76 kB Progress (3): 36/71 kB | 19/57 kB | 25/76 kB Progress (3): 36/71 kB | 19/57 kB | 27/76 kB Progress (3): 38/71 kB | 19/57 kB | 27/76 kB Progress (3): 38/71 kB | 22/57 kB | 27/76 kB Progress (3): 38/71 kB | 22/57 kB | 30/76 kB Progress (3): 41/71 kB | 22/57 kB | 30/76 kB Progress (3): 41/71 kB | 25/57 kB | 30/76 kB Progress (3): 44/71 kB | 25/57 kB | 30/76 kB Progress (3): 44/71 kB | 25/57 kB | 33/76 kB Progress (3): 44/71 kB | 27/57 kB | 33/76 kB Progress (3): 44/71 kB | 27/57 kB | 36/76 kB Progress (3): 47/71 kB | 27/57 kB | 36/76 kB Progress (3): 47/71 kB | 30/57 kB | 36/76 kB Progress (3): 49/71 kB | 30/57 kB | 36/76 kB Progress (3): 49/71 kB | 30/57 kB | 38/76 kB Progress (3): 52/71 kB | 30/57 kB | 38/76 kB Progress (3): 52/71 kB | 33/57 kB | 38/76 kB Progress (3): 55/71 kB | 33/57 kB | 38/76 kB Progress (3): 55/71 kB | 33/57 kB | 41/76 kB Progress (3): 55/71 kB | 36/57 kB | 41/76 kB Progress (3): 58/71 kB | 36/57 kB | 41/76 kB Progress (3): 58/71 kB | 36/57 kB | 44/76 kB Progress (3): 60/71 kB | 36/57 kB | 44/76 kB Progress (3): 60/71 kB | 38/57 kB | 44/76 kB Progress (3): 60/71 kB | 38/57 kB | 47/76 kB Progress (3): 63/71 kB | 38/57 kB | 47/76 kB Progress (3): 63/71 kB | 41/57 kB | 47/76 kB Progress (3): 63/71 kB | 41/57 kB | 49/76 kB Progress (3): 66/71 kB | 41/57 kB | 49/76 kB Progress (3): 66/71 kB | 44/57 kB | 49/76 kB Progress (3): 66/71 kB | 44/57 kB | 52/76 kB Progress (3): 69/71 kB | 44/57 kB | 52/76 kB Progress (3): 69/71 kB | 47/57 kB | 52/76 kB Progress (3): 71 kB | 47/57 kB | 52/76 kB Progress (3): 71 kB | 47/57 kB | 55/76 kB Progress (3): 71 kB | 49/57 kB | 55/76 kB Progress (3): 71 kB | 49/57 kB | 58/76 kB Progress (3): 71 kB | 52/57 kB | 58/76 kB Progress (3): 71 kB | 52/57 kB | 60/76 kB Progress (3): 71 kB | 55/57 kB | 60/76 kB Progress (3): 71 kB | 55/57 kB | 63/76 kB Progress (3): 71 kB | 57 kB | 63/76 kB Progress (3): 71 kB | 57 kB | 66/76 kB Progress (3): 71 kB | 57 kB | 69/76 kB Progress (3): 71 kB | 57 kB | 71/76 kB Progress (3): 71 kB | 57 kB | 74/76 kB Progress (3): 71 kB | 57 kB | 76 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-network-shuffle_2.11/2.4.6/spark-network-shuffle_2.11-2.4.6.jar (71 kB at 1.6 MB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-unsafe_2.11/2.4.6/spark-unsafe_2.11-2.4.6.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-kvstore_2.11/2.4.6/spark-kvstore_2.11-2.4.6.jar (57 kB at 1.3 MB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-tags_2.11/2.4.6/spark-tags_2.11-2.4.6.jar Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-launcher_2.11/2.4.6/spark-launcher_2.11-2.4.6.jar (76 kB at 1.6 MB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-sql_2.11/2.4.6/spark-sql_2.11-2.4.6.jar Progress (1): 2.7/15 kB Progress (1): 5.5/15 kB Progress (1): 8.2/15 kB Progress (1): 11/15 kB Progress (1): 14/15 kB Progress (1): 15 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-tags_2.11/2.4.6/spark-tags_2.11-2.4.6.jar (15 kB at 262 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-sketch_2.11/2.4.6/spark-sketch_2.11-2.4.6.jar Progress (1): 2.7/50 kB Progress (1): 5.5/50 kB Progress (1): 8.2/50 kB Progress (1): 11/50 kB Progress (1): 14/50 kB Progress (1): 16/50 kB Progress (1): 19/50 kB Progress (1): 22/50 kB Progress (1): 25/50 kB Progress (1): 27/50 kB Progress (1): 30/50 kB Progress (1): 33/50 kB Progress (1): 36/50 kB Progress (1): 38/50 kB Progress (1): 41/50 kB Progress (1): 44/50 kB Progress (1): 47/50 kB Progress (1): 49/50 kB Progress (1): 50 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-unsafe_2.11/2.4.6/spark-unsafe_2.11-2.4.6.jar (50 kB at 409 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-catalyst_2.11/2.4.6/spark-catalyst_2.11-2.4.6.jar Progress (1): 2.7/30 kB Progress (1): 5.5/30 kB Progress (1): 8.2/30 kB Progress (1): 11/30 kB Progress (1): 14/30 kB Progress (1): 16/30 kB Progress (1): 19/30 kB Progress (1): 22/30 kB Progress (1): 25/30 kB Progress (1): 27/30 kB Progress (1): 30 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-sketch_2.11/2.4.6/spark-sketch_2.11-2.4.6.jar (30 kB at 209 kB/s) Progress (1): 0/2.4 MB Progress (1): 0/2.4 MB Progress (1): 0/2.4 MB Progress (1): 0/2.4 MB Progress (1): 0.1/2.4 MB Progress (1): 0.1/2.4 MB Progress (1): 0.1/2.4 MB Progress (1): 0.1/2.4 MB Progress (1): 0.1/2.4 MB Progress (1): 0.1/2.4 MB Progress (1): 0.1/2.4 MB Progress (1): 0.1/2.4 MB Progress (1): 0.1/2.4 MB Progress (1): 0.2/2.4 MB Progress (1): 0.2/2.4 MB Progress (1): 0.2/2.4 MB Progress (1): 0.2/2.4 MB Progress (1): 0.2/2.4 MB Progress (1): 0.2/2.4 MB Progress (1): 0.2/2.4 MB Progress (1): 0.2/2.4 MB Progress (1): 0.2/2.4 MB Progress (1): 0.3/2.4 MB Progress (1): 0.3/2.4 MB Progress (1): 0.3/2.4 MB Progress (1): 0.3/2.4 MB Progress (1): 0.3/2.4 MB Progress (1): 0.3/2.4 MB Progress (1): 0.3/2.4 MB Progress (1): 0.3/2.4 MB Progress (1): 0.3/2.4 MB Progress (1): 0.4/2.4 MB Progress (1): 0.4/2.4 MB Progress (1): 0.4/2.4 MB Progress (1): 0.4/2.4 MB Progress (1): 0.4/2.4 MB Progress (1): 0.4/2.4 MB Progress (1): 0.4/2.4 MB Progress (1): 0.4/2.4 MB Progress (1): 0.4/2.4 MB Progress (1): 0.4/2.4 MB Progress (1): 0.5/2.4 MB Progress (1): 0.5/2.4 MB Progress (2): 0.5/2.4 MB | 0.1/10 MB Progress (2): 0.5/2.4 MB | 0.1/10 MB Progress (2): 0.5/2.4 MB | 0.1/10 MB Progress (2): 0.5/2.4 MB | 0.1/10 MB Progress (2): 0.5/2.4 MB | 0.1/10 MB Progress (2): 0.5/2.4 MB | 0.1/10 MB Progress (2): 0.5/2.4 MB | 0.1/10 MB Progress (2): 0.5/2.4 MB | 0.1/10 MB Progress (2): 0.5/2.4 MB | 0.1/10 MB Progress (2): 0.6/2.4 MB | 0.1/10 MB Progress (2): 0.6/2.4 MB | 0.1/10 MB Progress (2): 0.6/2.4 MB | 0.2/10 MB Progress (2): 0.6/2.4 MB | 0.2/10 MB Progress (2): 0.6/2.4 MB | 0.2/10 MB Progress (2): 0.6/2.4 MB | 0.2/10 MB Progress (2): 0.6/2.4 MB | 0.2/10 MB Progress (2): 0.6/2.4 MB | 0.2/10 MB Progress (2): 0.6/2.4 MB | 0.2/10 MB Progress (2): 0.6/2.4 MB | 0.2/10 MB Progress (2): 0.6/2.4 MB | 0.2/10 MB Progress (2): 0.7/2.4 MB | 0.2/10 MB Progress (2): 0.7/2.4 MB | 0.3/10 MB Progress (2): 0.7/2.4 MB | 0.3/10 MB Progress (2): 0.7/2.4 MB | 0.3/10 MB Progress (2): 0.7/2.4 MB | 0.3/10 MB Progress (2): 0.7/2.4 MB | 0.3/10 MB Progress (2): 0.7/2.4 MB | 0.3/10 MB Progress (2): 0.7/2.4 MB | 0.3/10 MB Progress (2): 0.7/2.4 MB | 0.3/10 MB Progress (2): 0.7/2.4 MB | 0.4/10 MB Progress (2): 0.7/2.4 MB | 0.4/10 MB Progress (2): 0.8/2.4 MB | 0.4/10 MB Progress (2): 0.8/2.4 MB | 0.4/10 MB Progress (2): 0.8/2.4 MB | 0.4/10 MB Progress (2): 0.8/2.4 MB | 0.4/10 MB Progress (2): 0.8/2.4 MB | 0.4/10 MB Progress (2): 0.8/2.4 MB | 0.4/10 MB Progress (2): 0.8/2.4 MB | 0.5/10 MB Progress (2): 0.8/2.4 MB | 0.5/10 MB Progress (2): 0.9/2.4 MB | 0.5/10 MB Progress (2): 0.9/2.4 MB | 0.5/10 MB Progress (2): 0.9/2.4 MB | 0.5/10 MB Progress (2): 0.9/2.4 MB | 0.5/10 MB Progress (2): 0.9/2.4 MB | 0.5/10 MB Progress (2): 0.9/2.4 MB | 0.5/10 MB Progress (2): 0.9/2.4 MB | 0.5/10 MB Progress (2): 0.9/2.4 MB | 0.6/10 MB Progress (2): 0.9/2.4 MB | 0.6/10 MB Progress (2): 1.0/2.4 MB | 0.6/10 MB Progress (2): 1.0/2.4 MB | 0.6/10 MB Progress (2): 1.0/2.4 MB | 0.7/10 MB Progress (2): 1.0/2.4 MB | 0.7/10 MB Progress (2): 1.0/2.4 MB | 0.7/10 MB Progress (2): 1.0/2.4 MB | 0.7/10 MB Progress (2): 1.0/2.4 MB | 0.7/10 MB Progress (2): 1.0/2.4 MB | 0.7/10 MB Progress (2): 1.1/2.4 MB | 0.7/10 MB Progress (2): 1.1/2.4 MB | 0.7/10 MB Progress (2): 1.1/2.4 MB | 0.7/10 MB Progress (2): 1.1/2.4 MB | 0.8/10 MB Progress (2): 1.1/2.4 MB | 0.8/10 MB Progress (2): 1.1/2.4 MB | 0.8/10 MB Progress (2): 1.1/2.4 MB | 0.8/10 MB Progress (2): 1.1/2.4 MB | 0.8/10 MB Progress (2): 1.2/2.4 MB | 0.8/10 MB Progress (2): 1.2/2.4 MB | 0.8/10 MB Progress (2): 1.2/2.4 MB | 0.8/10 MB Progress (2): 1.2/2.4 MB | 0.9/10 MB Progress (2): 1.2/2.4 MB | 0.9/10 MB Progress (2): 1.2/2.4 MB | 0.9/10 MB Progress (2): 1.2/2.4 MB | 0.9/10 MB Progress (2): 1.2/2.4 MB | 0.9/10 MB Progress (2): 1.3/2.4 MB | 0.9/10 MB Progress (2): 1.3/2.4 MB | 0.9/10 MB Progress (2): 1.3/2.4 MB | 0.9/10 MB Progress (2): 1.3/2.4 MB | 1.0/10 MB Progress (2): 1.3/2.4 MB | 1.0/10 MB Progress (2): 1.3/2.4 MB | 1.0/10 MB Progress (2): 1.3/2.4 MB | 1.0/10 MB Progress (2): 1.4/2.4 MB | 1.0/10 MB Progress (2): 1.4/2.4 MB | 1.1/10 MB Progress (2): 1.4/2.4 MB | 1.1/10 MB Progress (2): 1.4/2.4 MB | 1.1/10 MB Progress (2): 1.4/2.4 MB | 1.1/10 MB Progress (2): 1.4/2.4 MB | 1.1/10 MB Progress (2): 1.4/2.4 MB | 1.1/10 MB Progress (2): 1.4/2.4 MB | 1.1/10 MB Progress (2): 1.5/2.4 MB | 1.1/10 MB Progress (2): 1.5/2.4 MB | 1.2/10 MB Progress (2): 1.5/2.4 MB | 1.2/10 MB Progress (2): 1.5/2.4 MB | 1.2/10 MB Progress (2): 1.5/2.4 MB | 1.2/10 MB Progress (2): 1.5/2.4 MB | 1.2/10 MB Progress (2): 1.5/2.4 MB | 1.2/10 MB Progress (2): 1.5/2.4 MB | 1.2/10 MB Progress (2): 1.6/2.4 MB | 1.2/10 MB Progress (2): 1.6/2.4 MB | 1.2/10 MB Progress (2): 1.6/2.4 MB | 1.3/10 MB Progress (2): 1.6/2.4 MB | 1.3/10 MB Progress (2): 1.6/2.4 MB | 1.3/10 MB Progress (2): 1.6/2.4 MB | 1.4/10 MB Progress (2): 1.6/2.4 MB | 1.4/10 MB Progress (2): 1.6/2.4 MB | 1.4/10 MB Progress (2): 1.6/2.4 MB | 1.4/10 MB Progress (2): 1.7/2.4 MB | 1.4/10 MB Progress (2): 1.7/2.4 MB | 1.4/10 MB Progress (2): 1.7/2.4 MB | 1.4/10 MB Progress (2): 1.7/2.4 MB | 1.4/10 MB Progress (2): 1.7/2.4 MB | 1.4/10 MB Progress (2): 1.7/2.4 MB | 1.5/10 MB Progress (2): 1.7/2.4 MB | 1.5/10 MB Progress (2): 1.7/2.4 MB | 1.5/10 MB Progress (2): 1.8/2.4 MB | 1.5/10 MB Progress (2): 1.8/2.4 MB | 1.5/10 MB Progress (2): 1.8/2.4 MB | 1.5/10 MB Progress (2): 1.8/2.4 MB | 1.5/10 MB Progress (2): 1.8/2.4 MB | 1.5/10 MB Progress (2): 1.8/2.4 MB | 1.6/10 MB Progress (2): 1.8/2.4 MB | 1.6/10 MB Progress (2): 1.8/2.4 MB | 1.6/10 MB Progress (2): 1.9/2.4 MB | 1.6/10 MB Progress (2): 1.9/2.4 MB | 1.6/10 MB Progress (2): 1.9/2.4 MB | 1.6/10 MB Progress (2): 1.9/2.4 MB | 1.6/10 MB Progress (2): 1.9/2.4 MB | 1.6/10 MB Progress (2): 1.9/2.4 MB | 1.6/10 MB Progress (2): 1.9/2.4 MB | 1.7/10 MB Progress (2): 1.9/2.4 MB | 1.7/10 MB Progress (2): 2.0/2.4 MB | 1.7/10 MB Progress (2): 2.0/2.4 MB | 1.7/10 MB Progress (2): 2.0/2.4 MB | 1.8/10 MB Progress (2): 2.0/2.4 MB | 1.8/10 MB Progress (2): 2.0/2.4 MB | 1.8/10 MB Progress (2): 2.0/2.4 MB | 1.8/10 MB Progress (2): 2.0/2.4 MB | 1.8/10 MB Progress (2): 2.0/2.4 MB | 1.8/10 MB Progress (2): 2.1/2.4 MB | 1.8/10 MB Progress (2): 2.1/2.4 MB | 1.8/10 MB Progress (2): 2.1/2.4 MB | 1.8/10 MB Progress (2): 2.1/2.4 MB | 1.9/10 MB Progress (2): 2.1/2.4 MB | 1.9/10 MB Progress (2): 2.1/2.4 MB | 1.9/10 MB Progress (2): 2.1/2.4 MB | 1.9/10 MB Progress (2): 2.1/2.4 MB | 1.9/10 MB Progress (2): 2.2/2.4 MB | 1.9/10 MB Progress (2): 2.2/2.4 MB | 1.9/10 MB Progress (2): 2.2/2.4 MB | 1.9/10 MB Progress (2): 2.2/2.4 MB | 2.0/10 MB Progress (2): 2.2/2.4 MB | 2.0/10 MB Progress (2): 2.2/2.4 MB | 2.0/10 MB Progress (2): 2.2/2.4 MB | 2.0/10 MB Progress (2): 2.2/2.4 MB | 2.0/10 MB Progress (2): 2.3/2.4 MB | 2.0/10 MB Progress (2): 2.3/2.4 MB | 2.0/10 MB Progress (2): 2.3/2.4 MB | 2.0/10 MB Progress (2): 2.3/2.4 MB | 2.0/10 MB Progress (2): 2.3/2.4 MB | 2.1/10 MB Progress (2): 2.3/2.4 MB | 2.1/10 MB Progress (2): 2.3/2.4 MB | 2.1/10 MB Progress (2): 2.4/2.4 MB | 2.1/10 MB Progress (2): 2.4/2.4 MB | 2.2/10 MB Progress (2): 2.4/2.4 MB | 2.2/10 MB Progress (2): 2.4/2.4 MB | 2.2/10 MB Progress (2): 2.4 MB | 2.2/10 MB Progress (2): 2.4 MB | 2.2/10 MB Progress (2): 2.4 MB | 2.3/10 MB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-network-common_2.11/2.4.6/spark-network-common_2.11-2.4.6.jar (2.4 MB at 5.2 MB/s) Progress (1): 2.3/10 MB Progress (1): 2.4/10 MB Progress (1): 2.4/10 MB Progress (1): 2.5/10 MB Progress (1): 2.6/10 MB Progress (1): 2.6/10 MB Progress (1): 2.7/10 MB Progress (1): 2.7/10 MB Progress (1): 2.8/10 MB Progress (1): 2.8/10 MB Progress (1): 2.9/10 MB Progress (1): 3.0/10 MB Progress (1): 3.0/10 MB Progress (1): 3.1/10 MB Progress (1): 3.1/10 MB Progress (1): 3.2/10 MB Progress (1): 3.2/10 MB Progress (1): 3.3/10 MB Progress (1): 3.4/10 MB Progress (1): 3.4/10 MB Progress (1): 3.5/10 MB Progress (1): 3.5/10 MB Progress (1): 3.6/10 MB Progress (1): 3.6/10 MB Progress (1): 3.7/10 MB Progress (1): 3.8/10 MB Progress (1): 3.8/10 MB Progress (1): 3.9/10 MB Progress (1): 3.9/10 MB Progress (1): 4.0/10 MB Progress (1): 4.0/10 MB Progress (1): 4.1/10 MB Progress (1): 4.2/10 MB Progress (1): 4.2/10 MB Progress (1): 4.3/10 MB Progress (1): 4.3/10 MB Progress (1): 4.4/10 MB Progress (1): 4.4/10 MB Progress (1): 4.5/10 MB Progress (1): 4.6/10 MB Progress (1): 4.6/10 MB Progress (1): 4.7/10 MB Progress (1): 4.7/10 MB Progress (1): 4.8/10 MB Progress (1): 4.8/10 MB Progress (1): 4.9/10 MB Progress (1): 5.0/10 MB Progress (1): 5.0/10 MB Progress (1): 5.1/10 MB Progress (1): 5.1/10 MB Progress (1): 5.2/10 MB Progress (1): 5.3/10 MB Progress (1): 5.3/10 MB Progress (1): 5.4/10 MB Progress (1): 5.4/10 MB Progress (1): 5.5/10 MB Progress (1): 5.5/10 MB Progress (1): 5.6/10 MB Progress (1): 5.7/10 MB Progress (1): 5.7/10 MB Progress (1): 5.8/10 MB Progress (1): 5.8/10 MB Progress (1): 5.9/10 MB Progress (1): 5.9/10 MB Progress (1): 6.0/10 MB Progress (1): 6.1/10 MB Progress (1): 6.1/10 MB Progress (1): 6.2/10 MB Progress (1): 6.2/10 MB Progress (1): 6.3/10 MB Progress (1): 6.3/10 MB Progress (1): 6.4/10 MB Progress (1): 6.5/10 MB Progress (1): 6.5/10 MB Progress (1): 6.6/10 MB Progress (1): 6.6/10 MB Progress (1): 6.7/10 MB Progress (1): 6.7/10 MB Progress (1): 6.8/10 MB Progress (1): 6.9/10 MB Progress (1): 6.9/10 MB Progress (1): 7.0/10 MB Progress (1): 7.0/10 MB Progress (1): 7.1/10 MB Progress (1): 7.1/10 MB Progress (1): 7.2/10 MB Progress (1): 7.3/10 MB Progress (1): 7.3/10 MB Progress (1): 7.4/10 MB Progress (1): 7.4/10 MB Progress (1): 7.5/10 MB Progress (1): 7.5/10 MB Progress (1): 7.6/10 MB Progress (1): 7.7/10 MB Progress (1): 7.7/10 MB Progress (1): 7.8/10 MB Progress (1): 7.8/10 MB Progress (1): 7.9/10 MB Progress (1): 7.9/10 MB Progress (1): 8.0/10 MB Progress (1): 8.1/10 MB Progress (1): 8.1/10 MB Progress (1): 8.2/10 MB Progress (1): 8.2/10 MB Progress (1): 8.3/10 MB Progress (1): 8.3/10 MB Progress (1): 8.4/10 MB Progress (1): 8.5/10 MB Progress (1): 8.5/10 MB Progress (1): 8.6/10 MB Progress (1): 8.6/10 MB Progress (1): 8.7/10 MB Progress (1): 8.7/10 MB Progress (1): 8.8/10 MB Progress (1): 8.9/10 MB Progress (1): 8.9/10 MB Progress (1): 9.0/10 MB Progress (1): 9.0/10 MB Progress (1): 9.1/10 MB Progress (1): 9.1/10 MB Progress (1): 9.2/10 MB Progress (1): 9.3/10 MB Progress (1): 9.3/10 MB Progress (1): 9.4/10 MB Progress (1): 9.4/10 MB Progress (1): 9.5/10 MB Progress (1): 9.6/10 MB Progress (1): 9.6/10 MB Progress (1): 9.7/10 MB Progress (1): 9.7/10 MB Progress (1): 9.8/10 MB Progress (1): 9.8/10 MB Progress (1): 9.9/10 MB Progress (1): 10.0/10 MB Progress (1): 10/10 MB Progress (1): 10/10 MB Progress (1): 10/10 MB Progress (1): 10/10 MB Progress (1): 10/10 MB Progress (1): 10 MB Progress (2): 10 MB | 0.1/14 MB Progress (2): 10 MB | 0.1/14 MB Progress (2): 10 MB | 0.2/14 MB Progress (2): 10 MB | 0.3/14 MB Progress (2): 10 MB | 0.4/14 MB Progress (2): 10 MB | 0.4/14 MB Progress (2): 10 MB | 0.5/14 MB Progress (2): 10 MB | 0.6/14 MB Progress (2): 10 MB | 0.7/14 MB Progress (2): 10 MB | 0.7/14 MB Progress (2): 10 MB | 0.8/14 MB Progress (2): 10 MB | 0.9/14 MB Progress (2): 10 MB | 1.0/14 MB Progress (2): 10 MB | 1.0/14 MB Progress (2): 10 MB | 1.1/14 MB Progress (2): 10 MB | 1.2/14 MB Progress (2): 10 MB | 1.2/14 MB Progress (2): 10 MB | 1.3/14 MB Progress (2): 10 MB | 1.4/14 MB Progress (2): 10 MB | 1.5/14 MB Progress (2): 10 MB | 1.5/14 MB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-catalyst_2.11/2.4.6/spark-catalyst_2.11-2.4.6.jar (10 MB at 13 MB/s) Progress (1): 1.6/14 MB Progress (1): 1.7/14 MB Progress (1): 1.8/14 MB Progress (1): 1.8/14 MB Progress (1): 1.9/14 MB Progress (1): 2.0/14 MB Progress (1): 2.1/14 MB Progress (1): 2.1/14 MB Progress (1): 2.2/14 MB Progress (1): 2.3/14 MB Progress (1): 2.4/14 MB Progress (1): 2.4/14 MB Progress (1): 2.5/14 MB Progress (1): 2.6/14 MB Progress (1): 2.6/14 MB Progress (1): 2.7/14 MB Progress (1): 2.8/14 MB Progress (1): 2.9/14 MB Progress (1): 2.9/14 MB Progress (1): 3.0/14 MB Progress (1): 3.1/14 MB Progress (1): 3.2/14 MB Progress (1): 3.2/14 MB Progress (1): 3.3/14 MB Progress (1): 3.4/14 MB Progress (1): 3.5/14 MB Progress (1): 3.5/14 MB Progress (1): 3.6/14 MB Progress (1): 3.7/14 MB Progress (1): 3.8/14 MB Progress (1): 3.8/14 MB Progress (1): 3.9/14 MB Progress (1): 4.0/14 MB Progress (1): 4.0/14 MB Progress (1): 4.1/14 MB Progress (1): 4.2/14 MB Progress (1): 4.3/14 MB Progress (1): 4.3/14 MB Progress (1): 4.4/14 MB Progress (1): 4.5/14 MB Progress (1): 4.6/14 MB Progress (1): 4.6/14 MB Progress (1): 4.7/14 MB Progress (1): 4.8/14 MB Progress (1): 4.9/14 MB Progress (1): 4.9/14 MB Progress (1): 5.0/14 MB Progress (1): 5.1/14 MB Progress (2): 5.1/14 MB | 0/9.9 MB Progress (2): 5.2/14 MB | 0/9.9 MB Progress (2): 5.2/14 MB | 0/9.9 MB Progress (2): 5.2/14 MB | 0.1/9.9 MB Progress (2): 5.3/14 MB | 0.1/9.9 MB Progress (2): 5.3/14 MB | 0.1/9.9 MB Progress (2): 5.4/14 MB | 0.1/9.9 MB Progress (2): 5.4/14 MB | 0.2/9.9 MB Progress (2): 5.5/14 MB | 0.2/9.9 MB Progress (2): 5.5/14 MB | 0.2/9.9 MB Progress (2): 5.5/14 MB | 0.2/9.9 MB Progress (2): 5.5/14 MB | 0.3/9.9 MB Progress (2): 5.6/14 MB | 0.3/9.9 MB Progress (2): 5.6/14 MB | 0.4/9.9 MB Progress (2): 5.7/14 MB | 0.4/9.9 MB Progress (2): 5.7/14 MB | 0.4/9.9 MB Progress (2): 5.7/14 MB | 0.4/9.9 MB Progress (2): 5.7/14 MB | 0.5/9.9 MB Progress (2): 5.8/14 MB | 0.5/9.9 MB Progress (2): 5.8/14 MB | 0.5/9.9 MB Progress (2): 5.9/14 MB | 0.5/9.9 MB Progress (2): 5.9/14 MB | 0.5/9.9 MB Progress (2): 6.0/14 MB | 0.5/9.9 MB Progress (2): 6.0/14 MB | 0.6/9.9 MB Progress (2): 6.0/14 MB | 0.6/9.9 MB Progress (2): 6.0/14 MB | 0.6/9.9 MB Progress (2): 6.0/14 MB | 0.7/9.9 MB Progress (2): 6.1/14 MB | 0.7/9.9 MB Progress (2): 6.1/14 MB | 0.7/9.9 MB Progress (2): 6.1/14 MB | 0.8/9.9 MB Progress (2): 6.2/14 MB | 0.8/9.9 MB Progress (2): 6.2/14 MB | 0.8/9.9 MB Progress (2): 6.3/14 MB | 0.8/9.9 MB Progress (2): 6.3/14 MB | 0.9/9.9 MB Progress (2): 6.3/14 MB | 0.9/9.9 MB Progress (2): 6.3/14 MB | 0.9/9.9 MB Progress (2): 6.3/14 MB | 1.0/9.9 MB Progress (2): 6.4/14 MB | 1.0/9.9 MB Progress (2): 6.4/14 MB | 1.0/9.9 MB Progress (2): 6.4/14 MB | 1.1/9.9 MB Progress (2): 6.5/14 MB | 1.1/9.9 MB Progress (2): 6.5/14 MB | 1.1/9.9 MB Progress (2): 6.6/14 MB | 1.1/9.9 MB Progress (2): 6.6/14 MB | 1.2/9.9 MB Progress (2): 6.6/14 MB | 1.2/9.9 MB Progress (2): 6.6/14 MB | 1.2/9.9 MB Progress (2): 6.6/14 MB | 1.3/9.9 MB Progress (2): 6.7/14 MB | 1.3/9.9 MB Progress (2): 6.7/14 MB | 1.3/9.9 MB Progress (2): 6.7/14 MB | 1.4/9.9 MB Progress (2): 6.8/14 MB | 1.4/9.9 MB Progress (2): 6.8/14 MB | 1.4/9.9 MB Progress (2): 6.9/14 MB | 1.4/9.9 MB Progress (2): 6.9/14 MB | 1.5/9.9 MB Progress (2): 6.9/14 MB | 1.5/9.9 MB Progress (2): 6.9/14 MB | 1.5/9.9 MB Progress (2): 6.9/14 MB | 1.6/9.9 MB Progress (2): 7.0/14 MB | 1.6/9.9 MB Progress (2): 7.0/14 MB | 1.6/9.9 MB Progress (2): 7.1/14 MB | 1.6/9.9 MB Progress (2): 7.1/14 MB | 1.7/9.9 MB Progress (2): 7.1/14 MB | 1.7/9.9 MB Progress (2): 7.1/14 MB | 1.7/9.9 MB Progress (2): 7.1/14 MB | 1.8/9.9 MB Progress (2): 7.2/14 MB | 1.8/9.9 MB Progress (2): 7.2/14 MB | 1.8/9.9 MB Progress (2): 7.2/14 MB | 1.9/9.9 MB Progress (2): 7.3/14 MB | 1.9/9.9 MB Progress (2): 7.3/14 MB | 1.9/9.9 MB Progress (2): 7.4/14 MB | 1.9/9.9 MB Progress (2): 7.4/14 MB | 2.0/9.9 MB Progress (2): 7.4/14 MB | 2.0/9.9 MB Progress (2): 7.4/14 MB | 2.0/9.9 MB Progress (2): 7.4/14 MB | 2.1/9.9 MB Progress (2): 7.5/14 MB | 2.1/9.9 MB Progress (2): 7.5/14 MB | 2.1/9.9 MB Progress (2): 7.6/14 MB | 2.1/9.9 MB Progress (2): 7.6/14 MB | 2.2/9.9 MB Progress (2): 7.6/14 MB | 2.2/9.9 MB Progress (2): 7.7/14 MB | 2.2/9.9 MB Progress (2): 7.7/14 MB | 2.3/9.9 MB Progress (2): 7.7/14 MB | 2.3/9.9 MB Progress (2): 7.7/14 MB | 2.3/9.9 MB Progress (2): 7.7/14 MB | 2.4/9.9 MB Progress (2): 7.8/14 MB | 2.4/9.9 MB Progress (2): 7.8/14 MB | 2.4/9.9 MB Progress (2): 7.9/14 MB | 2.4/9.9 MB Progress (2): 7.9/14 MB | 2.5/9.9 MB Progress (2): 7.9/14 MB | 2.5/9.9 MB Progress (2): 8.0/14 MB | 2.5/9.9 MB Progress (2): 8.0/14 MB | 2.6/9.9 MB Progress (2): 8.0/14 MB | 2.6/9.9 MB Progress (2): 8.0/14 MB | 2.6/9.9 MB Progress (2): 8.0/14 MB | 2.7/9.9 MB Progress (2): 8.1/14 MB | 2.7/9.9 MB Progress (2): 8.1/14 MB | 2.7/9.9 MB Progress (2): 8.2/14 MB | 2.7/9.9 MB Progress (2): 8.2/14 MB | 2.8/9.9 MB Progress (2): 8.2/14 MB | 2.8/9.9 MB Progress (2): 8.3/14 MB | 2.8/9.9 MB Progress (2): 8.3/14 MB | 2.9/9.9 MB Progress (2): 8.3/14 MB | 2.9/9.9 MB Progress (2): 8.3/14 MB | 2.9/9.9 MB Progress (2): 8.3/14 MB | 3.0/9.9 MB Progress (2): 8.4/14 MB | 3.0/9.9 MB Progress (2): 8.4/14 MB | 3.0/9.9 MB Progress (2): 8.5/14 MB | 3.0/9.9 MB Progress (2): 8.5/14 MB | 3.1/9.9 MB Progress (2): 8.5/14 MB | 3.1/9.9 MB Progress (2): 8.5/14 MB | 3.1/9.9 MB Progress (2): 8.5/14 MB | 3.2/9.9 MB Progress (2): 8.6/14 MB | 3.2/9.9 MB Progress (2): 8.6/14 MB | 3.2/9.9 MB Progress (2): 8.6/14 MB | 3.3/9.9 MB Progress (2): 8.7/14 MB | 3.3/9.9 MB Progress (2): 8.7/14 MB | 3.3/9.9 MB Progress (2): 8.8/14 MB | 3.3/9.9 MB Progress (2): 8.8/14 MB | 3.4/9.9 MB Progress (2): 8.8/14 MB | 3.4/9.9 MB Progress (2): 8.8/14 MB | 3.4/9.9 MB Progress (2): 8.8/14 MB | 3.4/9.9 MB Progress (2): 8.9/14 MB | 3.4/9.9 MB Progress (2): 8.9/14 MB | 3.5/9.9 MB Progress (2): 9.0/14 MB | 3.5/9.9 MB Progress (2): 9.0/14 MB | 3.5/9.9 MB Progress (2): 9.0/14 MB | 3.6/9.9 MB Progress (2): 9.1/14 MB | 3.6/9.9 MB Progress (2): 9.1/14 MB | 3.6/9.9 MB Progress (2): 9.1/14 MB | 3.6/9.9 MB Progress (2): 9.1/14 MB | 3.7/9.9 MB Progress (2): 9.1/14 MB | 3.7/9.9 MB Progress (2): 9.2/14 MB | 3.7/9.9 MB Progress (2): 9.2/14 MB | 3.8/9.9 MB Progress (2): 9.3/14 MB | 3.8/9.9 MB Progress (2): 9.3/14 MB | 3.8/9.9 MB Progress (2): 9.3/14 MB | 3.9/9.9 MB Progress (2): 9.4/14 MB | 3.9/9.9 MB Progress (2): 9.4/14 MB | 3.9/9.9 MB Progress (2): 9.4/14 MB | 3.9/9.9 MB Progress (2): 9.4/14 MB | 4.0/9.9 MB Progress (2): 9.4/14 MB | 4.0/9.9 MB Progress (2): 9.5/14 MB | 4.0/9.9 MB Progress (2): 9.5/14 MB | 4.1/9.9 MB Progress (2): 9.6/14 MB | 4.1/9.9 MB Progress (2): 9.6/14 MB | 4.1/9.9 MB Progress (2): 9.6/14 MB | 4.2/9.9 MB Progress (2): 9.7/14 MB | 4.2/9.9 MB Progress (2): 9.7/14 MB | 4.2/9.9 MB Progress (2): 9.7/14 MB | 4.2/9.9 MB Progress (2): 9.7/14 MB | 4.3/9.9 MB Progress (2): 9.8/14 MB | 4.3/9.9 MB Progress (2): 9.8/14 MB | 4.3/9.9 MB Progress (2): 9.8/14 MB | 4.4/9.9 MB Progress (2): 9.9/14 MB | 4.4/9.9 MB Progress (2): 9.9/14 MB | 4.4/9.9 MB Progress (2): 9.9/14 MB | 4.4/9.9 MB Progress (2): 9.9/14 MB | 4.5/9.9 MB Progress (2): 9.9/14 MB | 4.5/9.9 MB Progress (2): 9.9/14 MB | 4.6/9.9 MB Progress (2): 10/14 MB | 4.6/9.9 MB Progress (2): 10/14 MB | 4.6/9.9 MB Progress (2): 10/14 MB | 4.6/9.9 MB Progress (2): 10/14 MB | 4.7/9.9 MB Progress (2): 10/14 MB | 4.7/9.9 MB Progress (2): 10/14 MB | 4.7/9.9 MB Progress (2): 10/14 MB | 4.8/9.9 MB Progress (2): 10/14 MB | 4.8/9.9 MB Progress (2): 10/14 MB | 4.8/9.9 MB Progress (2): 10/14 MB | 4.9/9.9 MB Progress (2): 10/14 MB | 4.9/9.9 MB Progress (2): 10/14 MB | 4.9/9.9 MB Progress (2): 10/14 MB | 5.0/9.9 MB Progress (2): 10/14 MB | 5.0/9.9 MB Progress (2): 10/14 MB | 5.0/9.9 MB Progress (2): 10/14 MB | 5.1/9.9 MB Progress (2): 10/14 MB | 5.1/9.9 MB Progress (2): 10/14 MB | 5.1/9.9 MB Progress (2): 10/14 MB | 5.2/9.9 MB Progress (2): 11/14 MB | 5.2/9.9 MB Progress (2): 11/14 MB | 5.2/9.9 MB Progress (2): 11/14 MB | 5.2/9.9 MB Progress (2): 11/14 MB | 5.3/9.9 MB Progress (2): 11/14 MB | 5.3/9.9 MB Progress (2): 11/14 MB | 5.3/9.9 MB Progress (2): 11/14 MB | 5.4/9.9 MB Progress (2): 11/14 MB | 5.4/9.9 MB Progress (2): 11/14 MB | 5.4/9.9 MB Progress (2): 11/14 MB | 5.5/9.9 MB Progress (2): 11/14 MB | 5.5/9.9 MB Progress (2): 11/14 MB | 5.5/9.9 MB Progress (2): 11/14 MB | 5.5/9.9 MB Progress (2): 11/14 MB | 5.6/9.9 MB Progress (2): 11/14 MB | 5.6/9.9 MB Progress (2): 11/14 MB | 5.6/9.9 MB Progress (2): 11/14 MB | 5.7/9.9 MB Progress (2): 11/14 MB | 5.7/9.9 MB Progress (2): 11/14 MB | 5.7/9.9 MB Progress (2): 11/14 MB | 5.8/9.9 MB Progress (2): 11/14 MB | 5.8/9.9 MB Progress (2): 11/14 MB | 5.8/9.9 MB Progress (2): 11/14 MB | 5.8/9.9 MB Progress (2): 11/14 MB | 5.9/9.9 MB Progress (2): 11/14 MB | 5.9/9.9 MB Progress (2): 11/14 MB | 5.9/9.9 MB Progress (2): 11/14 MB | 6.0/9.9 MB Progress (2): 11/14 MB | 6.0/9.9 MB Progress (2): 11/14 MB | 6.0/9.9 MB Progress (2): 11/14 MB | 6.1/9.9 MB Progress (2): 11/14 MB | 6.1/9.9 MB Progress (2): 11/14 MB | 6.1/9.9 MB Progress (2): 11/14 MB | 6.1/9.9 MB Progress (2): 11/14 MB | 6.2/9.9 MB Progress (2): 11/14 MB | 6.2/9.9 MB Progress (2): 12/14 MB | 6.2/9.9 MB Progress (2): 12/14 MB | 6.3/9.9 MB Progress (2): 12/14 MB | 6.3/9.9 MB Progress (2): 12/14 MB | 6.3/9.9 MB Progress (2): 12/14 MB | 6.3/9.9 MB Progress (2): 12/14 MB | 6.3/9.9 MB Progress (2): 12/14 MB | 6.4/9.9 MB Progress (2): 12/14 MB | 6.4/9.9 MB Progress (2): 12/14 MB | 6.4/9.9 MB Progress (2): 12/14 MB | 6.5/9.9 MB Progress (2): 12/14 MB | 6.5/9.9 MB Progress (2): 12/14 MB | 6.5/9.9 MB Progress (2): 12/14 MB | 6.6/9.9 MB Progress (2): 12/14 MB | 6.6/9.9 MB Progress (2): 12/14 MB | 6.6/9.9 MB Progress (2): 12/14 MB | 6.7/9.9 MB Progress (2): 12/14 MB | 6.7/9.9 MB Progress (2): 12/14 MB | 6.7/9.9 MB Progress (2): 12/14 MB | 6.8/9.9 MB Progress (2): 12/14 MB | 6.8/9.9 MB Progress (2): 12/14 MB | 6.8/9.9 MB Progress (2): 12/14 MB | 6.9/9.9 MB Progress (2): 12/14 MB | 6.9/9.9 MB Progress (2): 12/14 MB | 6.9/9.9 MB Progress (2): 12/14 MB | 7.0/9.9 MB Progress (2): 12/14 MB | 7.0/9.9 MB Progress (2): 12/14 MB | 7.0/9.9 MB Progress (2): 12/14 MB | 7.1/9.9 MB Progress (2): 12/14 MB | 7.1/9.9 MB Progress (2): 12/14 MB | 7.1/9.9 MB Progress (2): 12/14 MB | 7.1/9.9 MB Progress (2): 12/14 MB | 7.2/9.9 MB Progress (2): 12/14 MB | 7.2/9.9 MB Progress (2): 12/14 MB | 7.2/9.9 MB Progress (2): 12/14 MB | 7.3/9.9 MB Progress (2): 13/14 MB | 7.3/9.9 MB Progress (2): 13/14 MB | 7.3/9.9 MB Progress (2): 13/14 MB | 7.3/9.9 MB Progress (2): 13/14 MB | 7.4/9.9 MB Progress (2): 13/14 MB | 7.4/9.9 MB Progress (2): 13/14 MB | 7.4/9.9 MB Progress (2): 13/14 MB | 7.5/9.9 MB Progress (2): 13/14 MB | 7.5/9.9 MB Progress (2): 13/14 MB | 7.5/9.9 MB Progress (2): 13/14 MB | 7.5/9.9 MB Progress (2): 13/14 MB | 7.6/9.9 MB Progress (2): 13/14 MB | 7.6/9.9 MB Progress (2): 13/14 MB | 7.6/9.9 MB Progress (2): 13/14 MB | 7.7/9.9 MB Progress (2): 13/14 MB | 7.7/9.9 MB Progress (2): 13/14 MB | 7.7/9.9 MB Progress (2): 13/14 MB | 7.8/9.9 MB Progress (2): 13/14 MB | 7.8/9.9 MB Progress (2): 13/14 MB | 7.8/9.9 MB Progress (2): 13/14 MB | 7.8/9.9 MB Progress (2): 13/14 MB | 7.9/9.9 MB Progress (2): 13/14 MB | 7.9/9.9 MB Progress (2): 13/14 MB | 7.9/9.9 MB Progress (2): 13/14 MB | 8.0/9.9 MB Progress (2): 13/14 MB | 8.0/9.9 MB Progress (2): 13/14 MB | 8.0/9.9 MB Progress (2): 13/14 MB | 8.1/9.9 MB Progress (2): 13/14 MB | 8.1/9.9 MB Progress (2): 13/14 MB | 8.1/9.9 MB Progress (2): 13/14 MB | 8.1/9.9 MB Progress (2): 13/14 MB | 8.2/9.9 MB Progress (2): 13/14 MB | 8.2/9.9 MB Progress (2): 13/14 MB | 8.2/9.9 MB Progress (2): 13/14 MB | 8.3/9.9 MB Progress (2): 14/14 MB | 8.3/9.9 MB Progress (2): 14/14 MB | 8.3/9.9 MB Progress (2): 14/14 MB | 8.3/9.9 MB Progress (2): 14/14 MB | 8.4/9.9 MB Progress (2): 14/14 MB | 8.4/9.9 MB Progress (2): 14/14 MB | 8.4/9.9 MB Progress (2): 14/14 MB | 8.5/9.9 MB Progress (2): 14/14 MB | 8.5/9.9 MB Progress (2): 14/14 MB | 8.5/9.9 MB Progress (2): 14/14 MB | 8.5/9.9 MB Progress (2): 14/14 MB | 8.6/9.9 MB Progress (2): 14/14 MB | 8.6/9.9 MB Progress (2): 14/14 MB | 8.6/9.9 MB Progress (2): 14/14 MB | 8.7/9.9 MB Progress (2): 14/14 MB | 8.7/9.9 MB Progress (2): 14 MB | 8.7/9.9 MB Progress (2): 14 MB | 8.7/9.9 MB Progress (2): 14 MB | 8.8/9.9 MB Progress (2): 14 MB | 8.8/9.9 MB Progress (2): 14 MB | 8.9/9.9 MB Progress (2): 14 MB | 8.9/9.9 MB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-core_2.11/2.4.6/spark-core_2.11-2.4.6.jar (14 MB at 11 MB/s) Progress (1): 9.0/9.9 MB Progress (1): 9.0/9.9 MB Progress (1): 9.1/9.9 MB Progress (1): 9.1/9.9 MB Progress (1): 9.2/9.9 MB Progress (1): 9.2/9.9 MB Progress (1): 9.2/9.9 MB Progress (1): 9.3/9.9 MB Progress (1): 9.3/9.9 MB Progress (1): 9.4/9.9 MB Progress (1): 9.4/9.9 MB Progress (1): 9.5/9.9 MB Progress (1): 9.5/9.9 MB Progress (1): 9.6/9.9 MB Progress (1): 9.6/9.9 MB Progress (1): 9.7/9.9 MB Progress (1): 9.7/9.9 MB Progress (1): 9.8/9.9 MB Progress (1): 9.8/9.9 MB Progress (1): 9.9/9.9 MB Progress (1): 9.9 MB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-sql_2.11/2.4.6/spark-sql_2.11-2.4.6.jar (9.9 MB at 7.4 MB/s) [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-misc-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-misc-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-misc-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-misc/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-misc-spark2_2.11 --- [INFO] Modified 0 of 5 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ utils-misc-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-misc-spark2_2.11 --- [INFO] /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-misc/src/main/scala:-1: info: compiling [INFO] Compiling 1 source files to /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-misc/target/2.11.12/classes at 1592773150620 [INFO] prepare-compile in 0 s [INFO] compile in 2 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ utils-misc-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ utils-misc-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-misc/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ utils-misc-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-misc-spark2_2.11 --- [INFO] /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-misc/src/test/scala:-1: info: compiling [INFO] Compiling 4 source files to /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-misc/target/2.11.12/test-classes at 1592773154360 [INFO] prepare-compile in 0 s [INFO] compile in 5 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ utils-misc-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ utils-misc-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ utils-misc-spark2_2.11 --- Discovery starting. Discovery completed in 123 milliseconds. Run starting. Expected test count is: 11 SparkFunSuiteSuite: 2020-06-21 13:59:20 WARN Utils:66 - Your hostname, research-jenkins-worker-07 resolves to a loopback address: 127.0.1.1; using 192.168.10.27 instead (on interface eth0) 2020-06-21 13:59:20 WARN Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address 2020-06-21 13:59:20 WARN NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable - a simple test using spark - copying a resource should pass equivalence testing - load a resource file MathUtilsSuite: - check equality with floating point comparison - check inequality with floating point comparison - compute factorials - test array aggregation in isolation - use array aggregator with an rdd - safe wrapped log should work - softmax an array - multiply an array by a scalar Run completed in 2 seconds, 741 milliseconds. Total number of tests run: 11 Suites: completed 3, aborted 0 Tests: succeeded 11, failed 0, canceled 0, ignored 0, pending 0 All tests passed. [INFO] [INFO] -----------< org.bdgenomics.utils:utils-minhash-spark2_2.11 >----------- [INFO] Building utils-minhash-spark2_2.11: MinHash-based Jaccard similarity estimator 0.3.0-SNAPSHOT [3/8] [INFO] --------------------------------[ jar ]--------------------------------- Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-mllib_2.11/2.4.6/spark-mllib_2.11-2.4.6.pom Progress (1): 4.1/10 kB Progress (1): 8.2/10 kB Progress (1): 10 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-mllib_2.11/2.4.6/spark-mllib_2.11-2.4.6.pom (10 kB at 633 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-streaming_2.11/2.4.6/spark-streaming_2.11-2.4.6.pom Progress (1): 4.1/9.9 kB Progress (1): 8.2/9.9 kB Progress (1): 9.9 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-streaming_2.11/2.4.6/spark-streaming_2.11-2.4.6.pom (9.9 kB at 761 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-graphx_2.11/2.4.6/spark-graphx_2.11-2.4.6.pom Progress (1): 4.1/7.1 kB Progress (1): 7.1 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-graphx_2.11/2.4.6/spark-graphx_2.11-2.4.6.pom (7.1 kB at 792 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-mllib-local_2.11/2.4.6/spark-mllib-local_2.11-2.4.6.pom Progress (1): 4.1/4.6 kB Progress (1): 4.6 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-mllib-local_2.11/2.4.6/spark-mllib-local_2.11-2.4.6.pom (4.6 kB at 416 kB/s) Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-mllib_2.11/2.4.6/spark-mllib_2.11-2.4.6.jar Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-streaming_2.11/2.4.6/spark-streaming_2.11-2.4.6.jar Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-graphx_2.11/2.4.6/spark-graphx_2.11-2.4.6.jar Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-mllib-local_2.11/2.4.6/spark-mllib-local_2.11-2.4.6.jar Progress (1): 4.1/184 kB Progress (2): 4.1/184 kB | 4.1/708 kB Progress (2): 8.2/184 kB | 4.1/708 kB Progress (2): 8.2/184 kB | 8.2/708 kB Progress (2): 12/184 kB | 8.2/708 kB Progress (2): 12/184 kB | 12/708 kB Progress (2): 16/184 kB | 12/708 kB Progress (2): 16/184 kB | 16/708 kB Progress (2): 20/184 kB | 16/708 kB Progress (2): 20/184 kB | 20/708 kB Progress (2): 25/184 kB | 20/708 kB Progress (2): 25/184 kB | 25/708 kB Progress (2): 29/184 kB | 25/708 kB Progress (2): 29/184 kB | 29/708 kB Progress (2): 33/184 kB | 29/708 kB Progress (2): 33/184 kB | 33/708 kB Progress (2): 37/184 kB | 33/708 kB Progress (2): 41/184 kB | 33/708 kB Progress (2): 41/184 kB | 37/708 kB Progress (2): 45/184 kB | 37/708 kB Progress (2): 45/184 kB | 41/708 kB Progress (2): 49/184 kB | 41/708 kB Progress (2): 49/184 kB | 45/708 kB Progress (2): 49/184 kB | 49/708 kB Progress (2): 53/184 kB | 49/708 kB Progress (2): 53/184 kB | 53/708 kB Progress (2): 57/184 kB | 53/708 kB Progress (2): 57/184 kB | 57/708 kB Progress (2): 61/184 kB | 57/708 kB Progress (2): 61/184 kB | 61/708 kB Progress (2): 66/184 kB | 61/708 kB Progress (2): 66/184 kB | 66/708 kB Progress (2): 66/184 kB | 70/708 kB Progress (2): 70/184 kB | 70/708 kB Progress (2): 70/184 kB | 74/708 kB Progress (2): 74/184 kB | 74/708 kB Progress (2): 74/184 kB | 78/708 kB Progress (2): 78/184 kB | 78/708 kB Progress (2): 78/184 kB | 82/708 kB Progress (2): 82/184 kB | 82/708 kB Progress (2): 82/184 kB | 86/708 kB Progress (2): 86/184 kB | 86/708 kB Progress (2): 86/184 kB | 90/708 kB Progress (2): 90/184 kB | 90/708 kB Progress (2): 90/184 kB | 94/708 kB Progress (2): 94/184 kB | 94/708 kB Progress (2): 94/184 kB | 98/708 kB Progress (2): 98/184 kB | 98/708 kB Progress (2): 98/184 kB | 102/708 kB Progress (2): 102/184 kB | 102/708 kB Progress (2): 102/184 kB | 106/708 kB Progress (2): 106/184 kB | 106/708 kB Progress (2): 106/184 kB | 111/708 kB Progress (2): 111/184 kB | 111/708 kB Progress (2): 111/184 kB | 115/708 kB Progress (2): 115/184 kB | 115/708 kB Progress (2): 115/184 kB | 119/708 kB Progress (2): 119/184 kB | 119/708 kB Progress (2): 119/184 kB | 123/708 kB Progress (2): 123/184 kB | 123/708 kB Progress (2): 123/184 kB | 127/708 kB Progress (2): 127/184 kB | 127/708 kB Progress (2): 127/184 kB | 131/708 kB Progress (2): 131/184 kB | 131/708 kB Progress (2): 131/184 kB | 135/708 kB Progress (2): 135/184 kB | 135/708 kB Progress (2): 135/184 kB | 139/708 kB Progress (2): 139/184 kB | 139/708 kB Progress (2): 139/184 kB | 143/708 kB Progress (2): 143/184 kB | 143/708 kB Progress (2): 143/184 kB | 147/708 kB Progress (2): 147/184 kB | 147/708 kB Progress (2): 147/184 kB | 152/708 kB Progress (2): 152/184 kB | 152/708 kB Progress (2): 152/184 kB | 156/708 kB Progress (2): 156/184 kB | 156/708 kB Progress (2): 156/184 kB | 160/708 kB Progress (2): 160/184 kB | 160/708 kB Progress (2): 160/184 kB | 164/708 kB Progress (2): 164/184 kB | 164/708 kB Progress (2): 164/184 kB | 168/708 kB Progress (2): 168/184 kB | 168/708 kB Progress (2): 168/184 kB | 172/708 kB Progress (2): 172/184 kB | 172/708 kB Progress (2): 172/184 kB | 176/708 kB Progress (2): 176/184 kB | 176/708 kB Progress (2): 176/184 kB | 180/708 kB Progress (2): 180/184 kB | 180/708 kB Progress (2): 184 kB | 180/708 kB Progress (2): 184 kB | 184/708 kB Progress (2): 184 kB | 188/708 kB Progress (2): 184 kB | 193/708 kB Progress (2): 184 kB | 197/708 kB Progress (2): 184 kB | 201/708 kB Progress (2): 184 kB | 205/708 kB Progress (2): 184 kB | 209/708 kB Progress (2): 184 kB | 213/708 kB Progress (2): 184 kB | 217/708 kB Progress (2): 184 kB | 221/708 kB Progress (2): 184 kB | 225/708 kB Progress (2): 184 kB | 229/708 kB Progress (2): 184 kB | 233/708 kB Progress (2): 184 kB | 238/708 kB Progress (2): 184 kB | 242/708 kB Progress (2): 184 kB | 246/708 kB Progress (2): 184 kB | 250/708 kB Progress (2): 184 kB | 254/708 kB Progress (2): 184 kB | 258/708 kB Progress (2): 184 kB | 262/708 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-mllib-local_2.11/2.4.6/spark-mllib-local_2.11-2.4.6.jar (184 kB at 5.9 MB/s) Progress (1): 266/708 kB Progress (1): 270/708 kB Progress (1): 274/708 kB Progress (1): 279/708 kB Progress (1): 283/708 kB Progress (1): 287/708 kB Progress (1): 291/708 kB Progress (1): 295/708 kB Progress (1): 299/708 kB Progress (1): 303/708 kB Progress (1): 307/708 kB Progress (1): 311/708 kB Progress (1): 315/708 kB Progress (1): 319/708 kB Progress (1): 324/708 kB Progress (1): 328/708 kB Progress (1): 332/708 kB Progress (1): 336/708 kB Progress (1): 340/708 kB Progress (1): 344/708 kB Progress (1): 348/708 kB Progress (1): 352/708 kB Progress (1): 356/708 kB Progress (1): 360/708 kB Progress (1): 365/708 kB Progress (1): 369/708 kB Progress (1): 373/708 kB Progress (1): 377/708 kB Progress (1): 381/708 kB Progress (1): 385/708 kB Progress (1): 389/708 kB Progress (1): 393/708 kB Progress (1): 397/708 kB Progress (1): 401/708 kB Progress (1): 406/708 kB Progress (1): 410/708 kB Progress (1): 414/708 kB Progress (1): 418/708 kB Progress (1): 422/708 kB Progress (1): 426/708 kB Progress (1): 430/708 kB Progress (1): 434/708 kB Progress (1): 438/708 kB Progress (1): 442/708 kB Progress (1): 446/708 kB Progress (1): 450/708 kB Progress (1): 454/708 kB Progress (1): 458/708 kB Progress (1): 463/708 kB Progress (1): 467/708 kB Progress (1): 471/708 kB Progress (1): 475/708 kB Progress (1): 479/708 kB Progress (1): 483/708 kB Progress (1): 487/708 kB Progress (1): 491/708 kB Progress (1): 495/708 kB Progress (1): 499/708 kB Progress (1): 504/708 kB Progress (1): 508/708 kB Progress (1): 512/708 kB Progress (1): 516/708 kB Progress (1): 520/708 kB Progress (1): 524/708 kB Progress (1): 528/708 kB Progress (1): 532/708 kB Progress (1): 536/708 kB Progress (1): 540/708 kB Progress (1): 544/708 kB Progress (1): 549/708 kB Progress (1): 553/708 kB Progress (1): 557/708 kB Progress (1): 561/708 kB Progress (1): 565/708 kB Progress (1): 569/708 kB Progress (1): 573/708 kB Progress (1): 577/708 kB Progress (1): 581/708 kB Progress (1): 585/708 kB Progress (1): 590/708 kB Progress (1): 594/708 kB Progress (1): 598/708 kB Progress (1): 602/708 kB Progress (1): 606/708 kB Progress (1): 610/708 kB Progress (1): 614/708 kB Progress (1): 618/708 kB Progress (1): 622/708 kB Progress (1): 626/708 kB Progress (1): 630/708 kB Progress (1): 635/708 kB Progress (1): 639/708 kB Progress (1): 643/708 kB Progress (1): 647/708 kB Progress (1): 651/708 kB Progress (1): 655/708 kB Progress (1): 657/708 kB Progress (1): 661/708 kB Progress (1): 665/708 kB Progress (1): 670/708 kB Progress (1): 674/708 kB Progress (1): 678/708 kB Progress (1): 682/708 kB Progress (1): 686/708 kB Progress (1): 690/708 kB Progress (1): 694/708 kB Progress (1): 698/708 kB Progress (1): 702/708 kB Progress (1): 706/708 kB Progress (1): 708 kB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-graphx_2.11/2.4.6/spark-graphx_2.11-2.4.6.jar (708 kB at 12 MB/s) Progress (1): 0/2.2 MB Progress (1): 0/2.2 MB Progress (1): 0/2.2 MB Progress (1): 0.1/2.2 MB Progress (1): 0.1/2.2 MB Progress (1): 0.1/2.2 MB Progress (1): 0.1/2.2 MB Progress (1): 0.1/2.2 MB Progress (1): 0.1/2.2 MB Progress (1): 0.2/2.2 MB Progress (1): 0.2/2.2 MB Progress (1): 0.2/2.2 MB Progress (1): 0.2/2.2 MB Progress (1): 0.2/2.2 MB Progress (1): 0.2/2.2 MB Progress (1): 0.3/2.2 MB Progress (1): 0.3/2.2 MB Progress (1): 0.3/2.2 MB Progress (1): 0.3/2.2 MB Progress (1): 0.3/2.2 MB Progress (1): 0.3/2.2 MB Progress (1): 0.4/2.2 MB Progress (1): 0.4/2.2 MB Progress (1): 0.4/2.2 MB Progress (1): 0.4/2.2 MB Progress (1): 0.4/2.2 MB Progress (1): 0.4/2.2 MB Progress (1): 0.5/2.2 MB Progress (1): 0.5/2.2 MB Progress (1): 0.5/2.2 MB Progress (1): 0.5/2.2 MB Progress (1): 0.5/2.2 MB Progress (1): 0.5/2.2 MB Progress (1): 0.6/2.2 MB Progress (1): 0.6/2.2 MB Progress (1): 0.6/2.2 MB Progress (1): 0.6/2.2 MB Progress (1): 0.6/2.2 MB Progress (1): 0.6/2.2 MB Progress (1): 0.7/2.2 MB Progress (1): 0.7/2.2 MB Progress (1): 0.7/2.2 MB Progress (1): 0.7/2.2 MB Progress (1): 0.7/2.2 MB Progress (1): 0.7/2.2 MB Progress (1): 0.7/2.2 MB Progress (1): 0.8/2.2 MB Progress (1): 0.8/2.2 MB Progress (1): 0.8/2.2 MB Progress (1): 0.8/2.2 MB Progress (1): 0.8/2.2 MB Progress (1): 0.8/2.2 MB Progress (1): 0.9/2.2 MB Progress (1): 0.9/2.2 MB Progress (1): 0.9/2.2 MB Progress (1): 0.9/2.2 MB Progress (1): 0.9/2.2 MB Progress (1): 0.9/2.2 MB Progress (1): 1.0/2.2 MB Progress (1): 1.0/2.2 MB Progress (1): 1.0/2.2 MB Progress (1): 1.0/2.2 MB Progress (1): 1.0/2.2 MB Progress (1): 1.0/2.2 MB Progress (1): 1.1/2.2 MB Progress (1): 1.1/2.2 MB Progress (1): 1.1/2.2 MB Progress (1): 1.1/2.2 MB Progress (1): 1.1/2.2 MB Progress (1): 1.1/2.2 MB Progress (1): 1.2/2.2 MB Progress (1): 1.2/2.2 MB Progress (1): 1.2/2.2 MB Progress (1): 1.2/2.2 MB Progress (1): 1.2/2.2 MB Progress (1): 1.2/2.2 MB Progress (1): 1.3/2.2 MB Progress (1): 1.3/2.2 MB Progress (1): 1.3/2.2 MB Progress (1): 1.3/2.2 MB Progress (1): 1.3/2.2 MB Progress (1): 1.3/2.2 MB Progress (1): 1.4/2.2 MB Progress (1): 1.4/2.2 MB Progress (1): 1.4/2.2 MB Progress (1): 1.4/2.2 MB Progress (1): 1.4/2.2 MB Progress (1): 1.4/2.2 MB Progress (1): 1.4/2.2 MB Progress (1): 1.5/2.2 MB Progress (1): 1.5/2.2 MB Progress (1): 1.5/2.2 MB Progress (1): 1.5/2.2 MB Progress (1): 1.5/2.2 MB Progress (1): 1.5/2.2 MB Progress (1): 1.6/2.2 MB Progress (1): 1.6/2.2 MB Progress (1): 1.6/2.2 MB Progress (1): 1.6/2.2 MB Progress (1): 1.6/2.2 MB Progress (1): 1.6/2.2 MB Progress (1): 1.7/2.2 MB Progress (1): 1.7/2.2 MB Progress (1): 1.7/2.2 MB Progress (1): 1.7/2.2 MB Progress (1): 1.7/2.2 MB Progress (1): 1.7/2.2 MB Progress (1): 1.8/2.2 MB Progress (1): 1.8/2.2 MB Progress (1): 1.8/2.2 MB Progress (1): 1.8/2.2 MB Progress (1): 1.8/2.2 MB Progress (1): 1.8/2.2 MB Progress (1): 1.9/2.2 MB Progress (1): 1.9/2.2 MB Progress (1): 1.9/2.2 MB Progress (1): 1.9/2.2 MB Progress (1): 1.9/2.2 MB Progress (1): 1.9/2.2 MB Progress (1): 2.0/2.2 MB Progress (1): 2.0/2.2 MB Progress (1): 2.0/2.2 MB Progress (1): 2.0/2.2 MB Progress (1): 2.0/2.2 MB Progress (1): 2.0/2.2 MB Progress (1): 2.1/2.2 MB Progress (1): 2.1/2.2 MB Progress (1): 2.1/2.2 MB Progress (1): 2.1/2.2 MB Progress (1): 2.1/2.2 MB Progress (1): 2.1/2.2 MB Progress (1): 2.2/2.2 MB Progress (1): 2.2/2.2 MB Progress (1): 2.2 MB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-streaming_2.11/2.4.6/spark-streaming_2.11-2.4.6.jar (2.2 MB at 8.6 MB/s) Progress (1): 0/8.0 MB Progress (1): 0.1/8.0 MB Progress (1): 0.1/8.0 MB Progress (1): 0.2/8.0 MB Progress (1): 0.2/8.0 MB Progress (1): 0.2/8.0 MB Progress (1): 0.3/8.0 MB Progress (1): 0.3/8.0 MB Progress (1): 0.4/8.0 MB Progress (1): 0.4/8.0 MB Progress (1): 0.5/8.0 MB Progress (1): 0.5/8.0 MB Progress (1): 0.5/8.0 MB Progress (1): 0.6/8.0 MB Progress (1): 0.6/8.0 MB Progress (1): 0.7/8.0 MB Progress (1): 0.7/8.0 MB Progress (1): 0.7/8.0 MB Progress (1): 0.8/8.0 MB Progress (1): 0.8/8.0 MB Progress (1): 0.9/8.0 MB Progress (1): 0.9/8.0 MB Progress (1): 0.9/8.0 MB Progress (1): 1.0/8.0 MB Progress (1): 1.0/8.0 MB Progress (1): 1.1/8.0 MB Progress (1): 1.1/8.0 MB Progress (1): 1.2/8.0 MB Progress (1): 1.2/8.0 MB Progress (1): 1.2/8.0 MB Progress (1): 1.3/8.0 MB Progress (1): 1.3/8.0 MB Progress (1): 1.4/8.0 MB Progress (1): 1.4/8.0 MB Progress (1): 1.4/8.0 MB Progress (1): 1.5/8.0 MB Progress (1): 1.5/8.0 MB Progress (1): 1.6/8.0 MB Progress (1): 1.6/8.0 MB Progress (1): 1.6/8.0 MB Progress (1): 1.7/8.0 MB Progress (1): 1.7/8.0 MB Progress (1): 1.8/8.0 MB Progress (1): 1.8/8.0 MB Progress (1): 1.8/8.0 MB Progress (1): 1.9/8.0 MB Progress (1): 1.9/8.0 MB Progress (1): 2.0/8.0 MB Progress (1): 2.0/8.0 MB Progress (1): 2.1/8.0 MB Progress (1): 2.1/8.0 MB Progress (1): 2.1/8.0 MB Progress (1): 2.2/8.0 MB Progress (1): 2.2/8.0 MB Progress (1): 2.3/8.0 MB Progress (1): 2.3/8.0 MB Progress (1): 2.3/8.0 MB Progress (1): 2.4/8.0 MB Progress (1): 2.4/8.0 MB Progress (1): 2.5/8.0 MB Progress (1): 2.5/8.0 MB Progress (1): 2.5/8.0 MB Progress (1): 2.6/8.0 MB Progress (1): 2.6/8.0 MB Progress (1): 2.7/8.0 MB Progress (1): 2.7/8.0 MB Progress (1): 2.7/8.0 MB Progress (1): 2.8/8.0 MB Progress (1): 2.8/8.0 MB Progress (1): 2.9/8.0 MB Progress (1): 2.9/8.0 MB Progress (1): 3.0/8.0 MB Progress (1): 3.0/8.0 MB Progress (1): 3.0/8.0 MB Progress (1): 3.1/8.0 MB Progress (1): 3.1/8.0 MB Progress (1): 3.2/8.0 MB Progress (1): 3.2/8.0 MB Progress (1): 3.2/8.0 MB Progress (1): 3.3/8.0 MB Progress (1): 3.3/8.0 MB Progress (1): 3.4/8.0 MB Progress (1): 3.4/8.0 MB Progress (1): 3.4/8.0 MB Progress (1): 3.5/8.0 MB Progress (1): 3.5/8.0 MB Progress (1): 3.6/8.0 MB Progress (1): 3.6/8.0 MB Progress (1): 3.6/8.0 MB Progress (1): 3.7/8.0 MB Progress (1): 3.7/8.0 MB Progress (1): 3.8/8.0 MB Progress (1): 3.8/8.0 MB Progress (1): 3.9/8.0 MB Progress (1): 3.9/8.0 MB Progress (1): 3.9/8.0 MB Progress (1): 4.0/8.0 MB Progress (1): 4.0/8.0 MB Progress (1): 4.1/8.0 MB Progress (1): 4.1/8.0 MB Progress (1): 4.1/8.0 MB Progress (1): 4.2/8.0 MB Progress (1): 4.2/8.0 MB Progress (1): 4.3/8.0 MB Progress (1): 4.3/8.0 MB Progress (1): 4.3/8.0 MB Progress (1): 4.4/8.0 MB Progress (1): 4.4/8.0 MB Progress (1): 4.5/8.0 MB Progress (1): 4.5/8.0 MB Progress (1): 4.5/8.0 MB Progress (1): 4.6/8.0 MB Progress (1): 4.6/8.0 MB Progress (1): 4.7/8.0 MB Progress (1): 4.7/8.0 MB Progress (1): 4.8/8.0 MB Progress (1): 4.8/8.0 MB Progress (1): 4.8/8.0 MB Progress (1): 4.9/8.0 MB Progress (1): 4.9/8.0 MB Progress (1): 5.0/8.0 MB Progress (1): 5.0/8.0 MB Progress (1): 5.0/8.0 MB Progress (1): 5.1/8.0 MB Progress (1): 5.1/8.0 MB Progress (1): 5.2/8.0 MB Progress (1): 5.2/8.0 MB Progress (1): 5.2/8.0 MB Progress (1): 5.3/8.0 MB Progress (1): 5.3/8.0 MB Progress (1): 5.4/8.0 MB Progress (1): 5.4/8.0 MB Progress (1): 5.5/8.0 MB Progress (1): 5.5/8.0 MB Progress (1): 5.5/8.0 MB Progress (1): 5.6/8.0 MB Progress (1): 5.6/8.0 MB Progress (1): 5.7/8.0 MB Progress (1): 5.7/8.0 MB Progress (1): 5.7/8.0 MB Progress (1): 5.8/8.0 MB Progress (1): 5.8/8.0 MB Progress (1): 5.9/8.0 MB Progress (1): 5.9/8.0 MB Progress (1): 5.9/8.0 MB Progress (1): 6.0/8.0 MB Progress (1): 6.0/8.0 MB Progress (1): 6.1/8.0 MB Progress (1): 6.1/8.0 MB Progress (1): 6.1/8.0 MB Progress (1): 6.2/8.0 MB Progress (1): 6.2/8.0 MB Progress (1): 6.3/8.0 MB Progress (1): 6.3/8.0 MB Progress (1): 6.4/8.0 MB Progress (1): 6.4/8.0 MB Progress (1): 6.4/8.0 MB Progress (1): 6.5/8.0 MB Progress (1): 6.5/8.0 MB Progress (1): 6.6/8.0 MB Progress (1): 6.6/8.0 MB Progress (1): 6.6/8.0 MB Progress (1): 6.7/8.0 MB Progress (1): 6.7/8.0 MB Progress (1): 6.8/8.0 MB Progress (1): 6.8/8.0 MB Progress (1): 6.8/8.0 MB Progress (1): 6.9/8.0 MB Progress (1): 6.9/8.0 MB Progress (1): 7.0/8.0 MB Progress (1): 7.0/8.0 MB Progress (1): 7.0/8.0 MB Progress (1): 7.1/8.0 MB Progress (1): 7.1/8.0 MB Progress (1): 7.2/8.0 MB Progress (1): 7.2/8.0 MB Progress (1): 7.3/8.0 MB Progress (1): 7.3/8.0 MB Progress (1): 7.3/8.0 MB Progress (1): 7.4/8.0 MB Progress (1): 7.4/8.0 MB Progress (1): 7.5/8.0 MB Progress (1): 7.5/8.0 MB Progress (1): 7.5/8.0 MB Progress (1): 7.6/8.0 MB Progress (1): 7.6/8.0 MB Progress (1): 7.7/8.0 MB Progress (1): 7.7/8.0 MB Progress (1): 7.7/8.0 MB Progress (1): 7.8/8.0 MB Progress (1): 7.8/8.0 MB Progress (1): 7.9/8.0 MB Progress (1): 7.9/8.0 MB Progress (1): 7.9/8.0 MB Progress (1): 8.0/8.0 MB Progress (1): 8.0/8.0 MB Progress (1): 8.0 MB Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-mllib_2.11/2.4.6/spark-mllib_2.11-2.4.6.jar (8.0 MB at 9.2 MB/s) [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-minhash-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-minhash-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-minhash-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-minhash/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-minhash-spark2_2.11 --- [INFO] Modified 0 of 8 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ utils-minhash-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-minhash/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-minhash-spark2_2.11 --- [INFO] /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-minhash/src/main/scala:-1: info: compiling [INFO] Compiling 6 source files to /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-minhash/target/2.11.12/classes at 1592773165007 [INFO] prepare-compile in 0 s [INFO] compile in 4 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ utils-minhash-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ utils-minhash-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-minhash/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ utils-minhash-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-minhash/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-minhash-spark2_2.11 --- [INFO] /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-minhash/src/test/scala:-1: info: compiling [INFO] Compiling 2 source files to /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-minhash/target/2.11.12/test-classes at 1592773169921 [INFO] prepare-compile in 0 s [INFO] compile in 4 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ utils-minhash-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ utils-minhash-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ utils-minhash-spark2_2.11 --- Discovery starting. Discovery completed in 138 milliseconds. Run starting. Expected test count is: 5 MinHashSignatureSuite: - compute the similarity of signatures - compute buckets for a simple signature MinHashSuite: 2020-06-21 13:59:35 WARN Utils:66 - Your hostname, research-jenkins-worker-07 resolves to a loopback address: 127.0.1.1; using 192.168.10.27 instead (on interface eth0) 2020-06-21 13:59:35 WARN Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address 2020-06-21 13:59:36 WARN NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable - compute exact overlap for ten 1000 bp reads - compute approximate overlap for ten 1000 bp reads across different band sizes - should throw exception if we pick an illegal band count Run completed in 3 seconds, 827 milliseconds. Total number of tests run: 5 Suites: completed 3, aborted 0 Tests: succeeded 5, failed 0, canceled 0, ignored 0, pending 0 All tests passed. [INFO] [INFO] -------------< org.bdgenomics.utils:utils-io-spark2_2.11 >-------------- [INFO] Building utils-io-spark2_2.11: I/O utils 0.3.0-SNAPSHOT [4/8] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-io-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-io-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-io-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-io/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-io-spark2_2.11 --- [INFO] Modified 0 of 9 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ utils-io-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-io/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-io-spark2_2.11 --- [INFO] /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-io/src/main/scala:-1: info: compiling [INFO] Compiling 8 source files to /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-io/target/2.11.12/classes at 1592773179960 [INFO] prepare-compile in 0 s [INFO] compile in 3 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ utils-io-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ utils-io-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-io/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ utils-io-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-io-spark2_2.11 --- [INFO] /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-io/src/test/scala:-1: info: compiling [INFO] Compiling 1 source files to /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-io/target/2.11.12/test-classes at 1592773184057 [INFO] prepare-compile in 0 s [INFO] compile in 3 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ utils-io-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ utils-io-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ utils-io-spark2_2.11 --- Discovery starting. Discovery completed in 98 milliseconds. Run starting. Expected test count is: 7 LocalFileLocatorSuite: - parentLocator retrieves the parent directory - relativeLocator retrieves a subdirectory - bytes accesses the named underlying file ByteArrayLocatorSuite: - byte access can be wrapped in a locator correctly FileLocatorSuite: - parseSlash can correctly parse a one-slash string - parseSlash can correctly parse a two-slash string - parseSlash can correctly parse a no-slash string Run completed in 188 milliseconds. Total number of tests run: 7 Suites: completed 4, aborted 0 Tests: succeeded 7, failed 0, canceled 0, ignored 0, pending 0 All tests passed. [INFO] [INFO] ---------< org.bdgenomics.utils:utils-statistics-spark2_2.11 >---------- [INFO] Building utils-statistics-spark2_2.11: Spark code for fitting statistical models 0.3.0-SNAPSHOT [5/8] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-statistics-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-statistics-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-statistics-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-statistics/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-statistics-spark2_2.11 --- [INFO] Modified 0 of 6 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ utils-statistics-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-statistics/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-statistics-spark2_2.11 --- [INFO] /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-statistics/src/main/scala:-1: info: compiling [INFO] Compiling 4 source files to /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-statistics/target/2.11.12/classes at 1592773188864 [INFO] prepare-compile in 0 s [INFO] compile in 5 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ utils-statistics-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ utils-statistics-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-statistics/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ utils-statistics-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-statistics/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-statistics-spark2_2.11 --- [INFO] /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-statistics/src/test/scala:-1: info: compiling [INFO] Compiling 2 source files to /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-statistics/target/2.11.12/test-classes at 1592773194437 [INFO] prepare-compile in 0 s [INFO] compile in 4 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ utils-statistics-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ utils-statistics-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ utils-statistics-spark2_2.11 --- Discovery starting. Discovery completed in 122 milliseconds. Run starting. Expected test count is: 6 PoissonMixtureModelSuite: 2020-06-21 13:59:59 WARN Utils:66 - Your hostname, research-jenkins-worker-07 resolves to a loopback address: 127.0.1.1; using 192.168.10.27 instead (on interface eth0) 2020-06-21 13:59:59 WARN Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address 2020-06-21 14:00:00 WARN NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable - run the m step on a trivial example 2020-06-21 14:00:02 WARN KMeans:66 - The input data is not directly cached, which may hurt performance if its parent RDDs are also uncached. 2020-06-21 14:00:02 WARN BLAS:61 - Failed to load implementation from: com.github.fommil.netlib.NativeSystemBLAS 2020-06-21 14:00:02 WARN BLAS:61 - Failed to load implementation from: com.github.fommil.netlib.NativeRefBLAS 2020-06-21 14:00:03 WARN KMeans:66 - The input data was not directly cached, which may hurt performance if its parent RDDs are also uncached. - fit a poisson to several thousand points ZScoreNormalizationSuite: - compute mean of a set of samples - compute variance of a set of samples - variance should be 0 if all elements are the same - check z-score for a varying rdd Run completed in 5 seconds, 180 milliseconds. Total number of tests run: 6 Suites: completed 3, aborted 0 Tests: succeeded 6, failed 0, canceled 0, ignored 0, pending 0 All tests passed. [INFO] [INFO] -------------< org.bdgenomics.utils:utils-cli-spark2_2.11 >------------- [INFO] Building utils-cli-spark2_2.11: utilities for building command line applications 0.3.0-SNAPSHOT [6/8] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-cli-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-cli-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-cli-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-cli/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-cli-spark2_2.11 --- [INFO] Modified 0 of 3 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ utils-cli-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-cli/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-cli-spark2_2.11 --- [INFO] /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-cli/src/main/scala:-1: info: compiling [INFO] Compiling 3 source files to /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-cli/target/2.11.12/classes at 1592773205189 [WARNING] warning: there was one deprecation warning; re-run with -deprecation for details [WARNING] one warning found [INFO] prepare-compile in 0 s [INFO] compile in 3 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ utils-cli-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ utils-cli-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-cli/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ utils-cli-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-cli/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-cli-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ utils-cli-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ utils-cli-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --------< org.bdgenomics.utils:utils-serialization-spark2_2.11 >-------- [INFO] Building utils-serialization-spark2_2.11: tools for serializing data 0.3.0-SNAPSHOT [7/8] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-serialization-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-serialization-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-serialization-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-serialization/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-serialization-spark2_2.11 --- [INFO] Modified 0 of 1 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ utils-serialization-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-serialization/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-serialization-spark2_2.11 --- [INFO] /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-serialization/src/main/scala:-1: info: compiling [INFO] Compiling 1 source files to /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-serialization/target/2.11.12/classes at 1592773209286 [INFO] prepare-compile in 0 s [INFO] compile in 1 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ utils-serialization-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ utils-serialization-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-serialization/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ utils-serialization-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-serialization/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-serialization-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ utils-serialization-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ utils-serialization-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ utils-serialization-spark2_2.11 --- Discovery starting. Discovery completed in 66 milliseconds. Run starting. Expected test count is: 0 DiscoverySuite: Run completed in 95 milliseconds. Total number of tests run: 0 Suites: completed 1, aborted 0 Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0 No tests were executed. [INFO] [INFO] ---------< org.bdgenomics.utils:utils-intervalrdd-spark2_2.11 >--------- [INFO] Building utils-intervalrdd-spark2_2.11: IntervalRDD based on interval tree 0.3.0-SNAPSHOT [8/8] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ utils-intervalrdd-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ utils-intervalrdd-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ utils-intervalrdd-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-intervalrdd/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ utils-intervalrdd-spark2_2.11 --- [INFO] Modified 0 of 8 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ utils-intervalrdd-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-intervalrdd/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ utils-intervalrdd-spark2_2.11 --- [INFO] /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-intervalrdd/src/main/scala:-1: info: compiling [INFO] Compiling 5 source files to /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-intervalrdd/target/2.11.12/classes at 1592773212913 [INFO] prepare-compile in 0 s [INFO] compile in 4 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ utils-intervalrdd-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ utils-intervalrdd-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-intervalrdd/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ utils-intervalrdd-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-intervalrdd/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ utils-intervalrdd-spark2_2.11 --- [INFO] /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-intervalrdd/src/test/scala:-1: info: compiling [INFO] Compiling 3 source files to /home/jenkins/workspace/bdg-utils-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.0/label/ubuntu/utils-intervalrdd/target/2.11.12/test-classes at 1592773218415 [INFO] prepare-compile in 0 s [INFO] compile in 6 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ utils-intervalrdd-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ utils-intervalrdd-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ utils-intervalrdd-spark2_2.11 --- Discovery starting. Discovery completed in 147 milliseconds. Run starting. Expected test count is: 31 IntervalRDDSuite: 2020-06-21 14:00:25 WARN Utils:66 - Your hostname, research-jenkins-worker-07 resolves to a loopback address: 127.0.1.1; using 192.168.10.27 instead (on interface eth0) 2020-06-21 14:00:25 WARN Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address 2020-06-21 14:00:25 WARN NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable - create IntervalRDD from RDD of datatype string - merge new values into existing IntervalRDD - call put multiple times on data with same interval - test filterByInterval - verify no data is lost in conversion from rdd to intervalrdd - count data where chromosome partitions overlap - get data where chromosome partitions overlap - apply predicate to the RDD - testing collect - test before and after toRDD sizes are the same - testing mapValues - Attempt to access data from non existing key - Delete values from rdd - Repartitions IntervalRDD IntervalPartitionSuite: - create new partition - create partition from iterator - get values from iterator-created partition - correctly fetches data that is initially unsorted - put some for iterator of intervals and key-values - get some for iterator of intervals - selectively getting intervals - putting differing number of reads into different regions - putting then getting a region that overlaps 3 regions - applying a predicate - applying a map IntervalArraySuite: - succeeds in searching empty IntervalArray - build a IntervalArray with a single item and retrieve data - build a IntervalArray out of multiple datapoints and retrieve data - verify get with requireOverlap set to false on IntervalArray retrieves nearest data - verify IntervalArray fetches all valid ranges - inserts new elements into IntervalArray Run completed in 5 seconds, 369 milliseconds. Total number of tests run: 31 Suites: completed 4, aborted 0 Tests: succeeded 31, failed 0, canceled 0, ignored 0, pending 0 All tests passed. [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for utils 0.3.0-SNAPSHOT: [INFO] [INFO] utils .............................................. SUCCESS [ 2.241 s] [INFO] utils-misc-spark2_2.11: Miscellaneous Spark utility code SUCCESS [ 16.351 s] [INFO] utils-minhash-spark2_2.11: MinHash-based Jaccard similarity estimator SUCCESS [ 16.317 s] [INFO] utils-io-spark2_2.11: I/O utils .................... SUCCESS [ 8.802 s] [INFO] utils-statistics-spark2_2.11: Spark code for fitting statistical models SUCCESS [ 16.507 s] [INFO] utils-cli-spark2_2.11: utilities for building command line applications SUCCESS [ 4.088 s] [INFO] utils-serialization-spark2_2.11: tools for serializing data SUCCESS [ 3.459 s] [INFO] utils-intervalrdd-spark2_2.11: IntervalRDD based on interval tree SUCCESS [ 18.538 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 01:26 min [INFO] Finished at: 2020-06-21T14:00:30-07:00 [INFO] ------------------------------------------------------------------------ # make verbose again set -x -v + set -x -v # we are done with maven, so clean up the maven temp dir find ${UTILS_MVN_TMP_DIR} + find /tmp/utilsTestMvnR3dyJFN /tmp/utilsTestMvnR3dyJFN /tmp/utilsTestMvnR3dyJFN/test.txt184304610603858233.txt /tmp/utilsTestMvnR3dyJFN/LocalFileLocatorSuite1603531486137917147test /tmp/utilsTestMvnR3dyJFN/LocalFileLocatorSuite1889406715377228228test /tmp/utilsTestMvnR3dyJFN/LocalFileLocatorSuite1580257298265823046test rm -rf ${UTILS_MVN_TMP_DIR} + rm -rf /tmp/utilsTestMvnR3dyJFN echo + echo echo "All the tests passed" + echo 'All the tests passed' All the tests passed echo + echo Recording test results Setting commit status on GitHub for https://github.com/bigdatagenomics/utils/commit/928d45dfeeff9b7bd53024297720ab7a14fbf969 Finished: SUCCESS