FailedChanges

Summary

  1. [DECA-1] Set up continuous integration. (commit: dce9ec9cdf2371024c79b7da0a0c22dbdf2f1ee9) (details)
  2. Formatting source, adding missing license headers. (commit: 1b44d45e7d758bd9ff3bb8b75ac72bf396b31e0b) (details)
Commit dce9ec9cdf2371024c79b7da0a0c22dbdf2f1ee9 by fnothaft
[DECA-1] Set up continuous integration.
Resolves #1.
(commit: dce9ec9cdf2371024c79b7da0a0c22dbdf2f1ee9)
The file was modifiedscripts/jenkins-test (diff)
The file was removedscripts/move_to_scala_2.10.sh
The file was removedscripts/move_to_spark_1.sh
The file was removedscripts/move_to_scala_2.11.sh
The file was removedscripts/move_to_spark_2.sh
Commit 1b44d45e7d758bd9ff3bb8b75ac72bf396b31e0b by fnothaft
Formatting source, adding missing license headers.
(commit: 1b44d45e7d758bd9ff3bb8b75ac72bf396b31e0b)
The file was modifieddeca-core/src/main/scala/org/bdgenomics/deca/serialization/DECAKryoRegistrator.scala (diff)
The file was modifieddeca-core/src/main/scala/org/bdgenomics/deca/util/Phred.scala (diff)
The file was modifieddeca-core/src/main/scala/org/bdgenomics/deca/hmm/FixedMatrix.scala (diff)
The file was modifieddeca-core/src/test/scala/org/bdgenomics/deca/HMMSuite.scala (diff)
The file was modifieddeca-core/src/main/scala/org/bdgenomics/deca/Normalization.scala (diff)
The file was modifieddeca-core/src/main/scala/org/bdgenomics/deca/Timers.scala (diff)
The file was modifieddeca-core/src/main/scala/org/bdgenomics/deca/util/Target.scala (diff)
The file was modifieddeca-core/src/main/scala/org/bdgenomics/deca/Coverage.scala (diff)
The file was modifieddeca-core/src/main/scala/org/bdgenomics/deca/hmm/TransitionProbabilities.scala (diff)
The file was modifieddeca-core/src/main/scala/org/bdgenomics/deca/util/FileMerger.scala (diff)
The file was modifieddeca-cli/src/main/scala/org/bdgenomics/deca/cli/Normalizer.scala (diff)
The file was modifieddeca-cli/src/main/scala/org/bdgenomics/deca/cli/util/StringOptionHandler.scala (diff)
The file was modifieddeca-core/src/main/scala/org/bdgenomics/deca/util/MLibUtils.scala (diff)
The file was modifieddeca-cli/src/main/scala/org/bdgenomics/deca/cli/Coverager.scala (diff)
The file was modifieddeca-core/src/main/scala/org/bdgenomics/deca/hmm/FixedVector.scala (diff)
The file was modifieddeca-core/src/main/scala/org/bdgenomics/deca/coverage/ReadDepthMatrix.scala (diff)
The file was modifieddeca-cli/src/main/scala/org/bdgenomics/deca/cli/Discoverer.scala (diff)
The file was modifieddeca-cli/src/main/scala/org/bdgenomics/deca/cli/NormalizingDiscoverer.scala (diff)
The file was modifieddeca-core/src/main/scala/org/bdgenomics/deca/HMM.scala (diff)
The file was modifieddeca-core/src/test/scala/org/bdgenomics/deca/CoverageSuite.scala (diff)
The file was modifieddeca-cli/src/main/scala/org/bdgenomics/deca/cli/util/IntOptionHandler.scala (diff)
The file was modifieddeca-cli/src/main/scala/org/bdgenomics/deca/cli/util/Handler.scala (diff)
The file was modifieddeca-core/src/test/scala/org/bdgenomics/deca/DecaSuite.scala (diff)
The file was modifieddeca-cli/src/main/scala/org/bdgenomics/deca/cli/CNVer.scala (diff)
The file was modifieddeca-core/src/main/scala/org/bdgenomics/deca/hmm/SampleModel.scala (diff)
The file was modifieddeca-core/src/test/scala/org/bdgenomics/deca/NormalizationSuite.scala (diff)