1. [DECA-22] Break up CNVs that span multiple contigs. (details)
  2. [DECA-21] Squash empty partitions. (details)
Commit 9a06d35f65b7c6fa9afdf3c5d81e30fefbf2f36c by fnothaft
[DECA-22] Break up CNVs that span multiple contigs.
Resolves #22.
The file was modifieddeca-core/src/main/scala/org/bdgenomics/deca/HMM.scala (diff)
The file was modifieddeca-core/src/test/scala/org/bdgenomics/deca/HMMSuite.scala (diff)
Commit 5a399df4215cc96e92491aec37d80c58dd923b59 by fnothaft
[DECA-21] Squash empty partitions.
Resolves #21. Rewrites mapPartitions call in a way that makes it easy
to check for an empty iterator before proceeding.
The file was modifieddeca-core/src/main/scala/org/bdgenomics/deca/Coverage.scala (diff)