Changes

Summary

  1. Add CRAM reference argument to CLI for loading alignments and fragments. (commit: 9be32ad) (details)
  2. Bump adam-python version to 0.34.0a0. (commit: 5e279c3) (details)
Commit 9be32ad9cd1d82e6b351160f049957a9ffb74d2c by heuermh
Add CRAM reference argument to CLI for loading alignments and fragments.
(commit: 9be32ad)
The file was modifiedadam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformFragments.scala (diff)
The file was addedadam-cli/src/main/scala/org/bdgenomics/adam/cli/CramArgs.scala
The file was modifiedadam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformAlignments.scala (diff)
The file was modifiedadam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala (diff)
The file was modifiedadam-cli/src/main/scala/org/bdgenomics/adam/cli/FlagStat.scala (diff)
The file was modifiedadam-cli/src/main/scala/org/bdgenomics/adam/cli/CountReadKmers.scala (diff)
The file was modifiedadam-cli/src/main/scala/org/bdgenomics/adam/cli/Coverage.scala (diff)
The file was modifiedadam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fastq.scala (diff)
Commit 5e279c39a4cbf7f2bbb562285ffe0f6c374d7652 by heuermh
Bump adam-python version to 0.34.0a0.
(commit: 5e279c3)
The file was modifiedadam-python/version.py (diff)