Changes

Summary

  1. Bump bcftools container image to 1.11--h7c999a4_0. (commit: 3d4dd70) (details)
  2. Bump blast container image to 2.10.1--pl526he19e7b1_3. (commit: 46162cb) (details)
  3. Bump bowtie container image to 1.3.0--py38hed8969a_1. (commit: d7963e5) (details)
  4. Bump bowtie2 container image to 2.4.2--py38h1c8e9b9_1. (commit: e5aba8d) (details)
  5. Bump bwa-mem2 container image to 2.1--he513fc3_0. (commit: 6025b0e) (details)
  6. Bump freebayes container image to 1.3.2--py38h40864fe_2. (commit: 0f10f8d) (details)
  7. Bump minimap2 container image to 2.17--hed695b0_3. (commit: 782cec9) (details)
  8. Bump samtools container image to 1.11--h6270b1f_0. (commit: 2bfd04d) (details)
  9. Bump star container image to 2.7.6a--0. (commit: 7ff5e42) (details)
  10. Bump snpeff container image to 4.3.1t--4. (commit: 2358e53) (details)
  11. Bump vt container image to 0.57721--heae7c10_3. (commit: 5a85b3d) (details)
Commit 3d4dd70c7fd00ca7747720d37e020f72b2d994cb by heuermh
Bump bcftools container image to 1.11--h7c999a4_0.
(commit: 3d4dd70)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala (diff)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala (diff)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala (diff)
Commit 46162cbde17fc431ad8a3012b5c72e8c5cc37013 by heuermh
Bump blast container image to 2.10.1--pl526he19e7b1_3.
(commit: 46162cb)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/Blastn.scala (diff)
Commit d7963e5619bbc9f08b7ce810c05178569ba1916a by heuermh
Bump bowtie container image to 1.3.0--py38hed8969a_1.
(commit: d7963e5)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/Bowtie.scala (diff)
Commit e5aba8d173dca8f60ad0c7ef4be726fdbaf44384 by heuermh
Bump bowtie2 container image to 2.4.2--py38h1c8e9b9_1.
(commit: e5aba8d)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/Bowtie2.scala (diff)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/SingleEndBowtie2.scala (diff)
Commit 6025b0eee72a15e86173bc8dc8082300cd64cecd by heuermh
Bump bwa-mem2 container image to 2.1--he513fc3_0.
(commit: 6025b0e)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/BwaMem2.scala (diff)
Commit 0f10f8d6187b966a281f1930f819ae764cfd6afb by heuermh
Bump freebayes container image to 1.3.2--py38h40864fe_2.
(commit: 0f10f8d)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/Freebayes.scala (diff)
Commit 782cec930839c4c84f2ec458108cba211cf6a97b by heuermh
Bump minimap2 container image to 2.17--hed695b0_3.
(commit: 782cec9)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/Minimap2.scala (diff)
Commit 2bfd04daa5a0d19df3b7f541dffb403bfc1316e0 by heuermh
Bump samtools container image to 1.11--h6270b1f_0.
(commit: 2bfd04d)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/SamtoolsMpileup.scala (diff)
Commit 7ff5e421d7d4d0b4b664e64a69732f9ad53455ab by heuermh
Bump star container image to 2.7.6a--0.
(commit: 7ff5e42)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/SingleEndStar.scala (diff)
Commit 2358e5365e59b00892102925f6c3eac16cd0f966 by heuermh
Bump snpeff container image to 4.3.1t--4.
(commit: 2358e53)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/SnpEff.scala (diff)
Commit 5a85b3d3f838bac6ac4c495679732247e82f8249 by heuermh
Bump vt container image to 0.57721--heae7c10_3.
(commit: 5a85b3d)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/VtNormalize.scala (diff)