Changes

Summary

  1. Bump bcftools container image to 1.11--h7c999a4_0. (commit: eb09b9a) (details)
  2. Bump blast container image to 2.10.1--pl526he19e7b1_3. (commit: eef1c46) (details)
  3. Bump bowtie container image to 1.3.0--py38hed8969a_1. (commit: 6c7af9d) (details)
  4. Bump bowtie2 container image to 2.4.2--py38h1c8e9b9_1. (commit: 4374a67) (details)
  5. Bump bwa-mem2 container image to 2.1--he513fc3_0. (commit: 892175a) (details)
  6. Bump freebayes container image to 1.3.2--py38h40864fe_2. (commit: 384a5b9) (details)
  7. Bump minimap2 container image to 2.17--hed695b0_3. (commit: f1aac6c) (details)
  8. Bump samtools container image to 1.11--h6270b1f_0. (commit: 34e41e6) (details)
  9. Bump star container image to 2.7.6a--0. (commit: 537fe0c) (details)
  10. Bump snpeff container image to 4.3.1t--4. (commit: 542275b) (details)
  11. Bump vt container image to 0.57721--heae7c10_3. (commit: 8e173cd) (details)
  12. Update --terms and other options for Ensembl VEP. (commit: a14c6a8) (details)
  13. Bump ensembl-vep container image to 101.0--pl526hecda079_0. (commit: 3b475eb) (details)
  14. Remove --vcf_info_field ANN argument. (commit: e647572) (details)
  15. Bump ADAM dependency version to 0.33.0. (commit: 86b17d9) (details)
Commit eb09b9a6f85f16f358aaf08a8db406072d48c3c0 by heuermh
Bump bcftools container image to 1.11--h7c999a4_0.
(commit: eb09b9a)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala (diff)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala (diff)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala (diff)
Commit eef1c4696d09a3756f4beaceee6b5f342451f634 by heuermh
Bump blast container image to 2.10.1--pl526he19e7b1_3.
(commit: eef1c46)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/Blastn.scala (diff)
Commit 6c7af9d656d867564d1974ee6d7f88a28f26afd8 by heuermh
Bump bowtie container image to 1.3.0--py38hed8969a_1.
(commit: 6c7af9d)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/Bowtie.scala (diff)
Commit 4374a67fe548837941be8f8292545919a942a9d0 by heuermh
Bump bowtie2 container image to 2.4.2--py38h1c8e9b9_1.
(commit: 4374a67)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/Bowtie2.scala (diff)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/SingleEndBowtie2.scala (diff)
Commit 892175a7c0f7c13ae2ef7c26bfde15977cab5656 by heuermh
Bump bwa-mem2 container image to 2.1--he513fc3_0.
(commit: 892175a)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/BwaMem2.scala (diff)
Commit 384a5b971cba882b22a3e819c5b81b4809b76d10 by heuermh
Bump freebayes container image to 1.3.2--py38h40864fe_2.
(commit: 384a5b9)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/Freebayes.scala (diff)
Commit f1aac6cb67f5f1a11b9da92a980eeb872af6b0b8 by heuermh
Bump minimap2 container image to 2.17--hed695b0_3.
(commit: f1aac6c)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/Minimap2.scala (diff)
Commit 34e41e6a4eb7c7b468d532dbfa79d3afe8902db2 by heuermh
Bump samtools container image to 1.11--h6270b1f_0.
(commit: 34e41e6)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/SamtoolsMpileup.scala (diff)
Commit 537fe0c0fb92a981cbc977bb61db95ece4438006 by heuermh
Bump star container image to 2.7.6a--0.
(commit: 537fe0c)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/SingleEndStar.scala (diff)
Commit 542275bd14b384c7e189997ece963c4244c5b979 by heuermh
Bump snpeff container image to 4.3.1t--4.
(commit: 542275b)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/SnpEff.scala (diff)
Commit 8e173cdabd7569c1d6d839d9824b315fd3faadc9 by heuermh
Bump vt container image to 0.57721--heae7c10_3.
(commit: 8e173cd)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/VtNormalize.scala (diff)
Commit a14c6a8a39ab99a16ac5e0c33553206b751753c0 by heuermh
Update --terms and other options for Ensembl VEP.
(commit: a14c6a8)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/Vep.scala (diff)
Commit 3b475eb9a5d760b58e2fca9874e24895878e0aee by heuermh
Bump ensembl-vep container image to 101.0--pl526hecda079_0.
(commit: 3b475eb)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/Vep.scala (diff)
Commit e647572b94722cce31d0056f5829ab0b63b201b0 by heuermh
Remove --vcf_info_field ANN argument.
(commit: e647572)
The file was modifiedcore/src/main/scala/org/bdgenomics/cannoli/Vep.scala (diff)
Commit 86b17d96502c3446895243b4cdeb42d56ce64ff0 by heuermh
Bump ADAM dependency version to 0.33.0.
(commit: 86b17d9)
The file was modifiedpom.xml (diff)