Test Result : MdTagSuite

0 failures
47 tests
Took 36 ms.

All Tests

Test nameDurationStatus
CIGAR with N operator2 msPassed
CIGAR with P operators0 msPassed
CIGAR with multiple N operators2 msPassed
CIGAR/MD tag mismatch should cause errors1 msPassed
Get correct matches base from MDTag and CIGAR with N0 msPassed
Get correct matches for MDTag with mismatches and deletions2 msPassed
Get correct matches for mdtag with insertion1 msPassed
Get correct matches for mdtag with insertion between mismatches0 msPassed
Get correct matches for mdtag with intron and deletion between mismatches1 msPassed
Get correct matches for mdtag with intron between mismatches0 msPassed
Get correct matches for mdtag with mismatch, insertion and deletion1 msPassed
Get correct matches for mdtag with mismatches and insertion1 msPassed
Get correct matches for mdtag with mismatches, insertion and deletion0 msPassed
Throw exception when number of deleted bases in mdtag disagrees with CIGAR0 msPassed
check complex mdtag2 msPassed
check that mdtag and rich record return same end0 msPassed
create new md tag from read vs. reference, alignment with deletion0 msPassed
create new md tag from read vs. reference, alignment with insert0 msPassed
create new md tag from read vs. reference, perfect alignment match, 1 mismatch0 msPassed
create new md tag from read vs. reference, perfect match0 msPassed
get correct string out of complex mdtag0 msPassed
get correct string out of mdtag with deletion at end0 msPassed
get correct string out of mdtag with mismatches at end0 msPassed
get correct string out of mdtag with mismatches at start0 msPassed
get correct string out of mdtag with no mismatches0 msPassed
get end of read with mismatches and a deletion at end0 msPassed
get end of read with no mismatches or deletions0 msPassed
get end of read with no mismatches, but a deletion at end0 msPassed
get gapped reference0 msPassed
get start of read with mismatches at the start0 msPassed
get start of read with no mismatches or deletions1 msPassed
get start of read with no mismatches, but with a deletion at the start0 msPassed
handle '=' and 'X' operators1 msPassed
md tag equality and hashcode1 msPassed
md tag invalid base1 msPassed
md tag pure insertion equality0 msPassed
md tag with non-digit initial value1 msPassed
md tag, pure insertion0 msPassed
md tag, pure insertion, test 20 msPassed
move a cigar alignment by two for a read5 msPassed
null md tag0 msPassed
rewrite alignment to all matches0 msPassed
rewrite alignment to include a deletion but otherwise all matches0 msPassed
rewrite alignment to include an insertion at the start of the read but otherwise all matches1 msPassed
rewrite alignment to two mismatches followed by all matches0 msPassed
valid md tags7 msPassed
zero length md tag0 msPassed