Test Result : ReferenceRegionSuite

0 failures
52 tests
Took 48 ms.

All Tests

Test nameDurationStatus
can build a reference region that covers the entirety of a contig0 msPassed
can build a reference region that covers the entirety of a contig with strand0 msPassed
can build a reference region with an open start position0 msPassed
can build a reference region with an open start position with strand0 msPassed
can build an open ended reference region0 msPassed
can build an open ended reference region with strand0 msPassed
cannot create an empty predicate1 msPassed
check the width of a reference region0 msPassed
compute convex hull of two sets0 msPassed
compute intersection1 msPassed
contains(: ReferencePosition)0 msPassed
contains(: ReferenceRegion)0 msPassed
convert a genotype and then get the reference region18 msPassed
create region from feature with null alignment positions fails1 msPassed
create region from mapped read contains read start and end0 msPassed
create region from read with null alignment positions fails0 msPassed
create region from unmapped read fails1 msPassed
create stranded region from feature on forward strand0 msPassed
create stranded region from feature on reverse strand0 msPassed
create stranded region from feature with null alignment positions fails0 msPassed
create stranded region from feature with null alignment strand fails1 msPassed
create stranded region from read on forward strand0 msPassed
create stranded region from read on reverse strand0 msPassed
create stranded region from read with null alignment positions fails0 msPassed
create stranded region from read with null alignment strand fails1 msPassed
create stranded region from unmapped read fails1 msPassed
distance(: ReferencePosition)0 msPassed
distance(: ReferenceRegion)0 msPassed
intersection fails on non-overlapping regions2 msPassed
intersection fails when minOverlap is not met0 msPassed
make a reference region for a variant or genotype0 msPassed
make a reference region for a variant or genotype starting at VCF 01 msPassed
merge1 msPassed
overlap tests for oriented reference region0 msPassed
overlaps and covers1 msPassed
overlapsBy and coversBy3 msPassed
parse contigName only string into reference regions1 msPassed
parse empty string throws IllegalArgumentException1 msPassed
parse string into reference regions0 msPassed
parse to end strings into reference regions1 msPassed
region name is sanitized when creating region from read0 msPassed
subtract0 msPassed
subtract fails on non-overlapping and non-covering regions1 msPassed
unevenly pad a reference region0 msPassed
unevenly pad a reference region into negative coordinate space, ensure non negative start0 msPassed
uniformly pad a reference region0 msPassed
uniformly pad a reference region into negative coordinate space, ensure non negative start0 msPassed
unstrandedDistance1 msPassed
validate that adjacent regions can be merged0 msPassed
validate that nearby regions can be merged0 msPassed
validate that non-adjacent regions cannot be merged1 msPassed
validate that non-nearby regions cannot be merged0 msPassed