Test Result : RealignIndelsSuite

0 failures (±0)
33 tests (±0)
Took 11 sec.

All Tests

Test nameDurationStatus
checking alternative consensus for artificial reads0.16 secPassed
checking extraction of reference from reads0.52 secPassed
checking mapping to targets for artificial reads0.56 secPassed
checking realigned reads for artificial input0.89 secPassed
checking realigned reads for artificial input using knowns1 secPassed
checking realigned reads for artificial input using knowns and reads1 secPassed
checking realigned reads for artificial input with reference file1.2 secPassed
extract seq/qual from a read with clipped bases at end1 msPassed
extract seq/qual from a read with clipped bases at start1 msPassed
extract seq/qual from a read with no clipped bases1 msPassed
get cigar and coordinates for read that falls wholly after deletion0 msPassed
get cigar and coordinates for read that falls wholly after insertion0 msPassed
get cigar and coordinates for read that falls wholly before insertion0 msPassed
get cigar and coordinates for read that partially spans insertion, clipped bases at end0 msPassed
get cigar and coordinates for read that partially spans insertion, clipped bases both ends0 msPassed
get cigar and coordinates for read that partially spans insertion, no clipped bases1 msPassed
get cigar and coordinates for read that spans deletion, clipped bases at start0 msPassed
get cigar and coordinates for read that spans indel, no clipped bases1 msPassed
if realigning a target doesn't improve the LOD, don't drop reads0.5 secPassed
if unclip is selected, don't drop base when extracting from a read with clipped bases1 msPassed
map reads to targets3 msPassed
realign a read with an insertion that goes off the end of the read0.77 secPassed
realign reads to an insertion0.9 secPassed
skip realigning reads if target is highly covered0.9 secPassed
skip realignment if target is an insufficient LOD improvement0.89 secPassed
test OP and OC tags1.1 secPassed
test mismatch quality scoring0 msPassed
test mismatch quality scoring after unpacking read0.16 secPassed
test mismatch quality scoring for no mismatches0 msPassed
test mismatch quality scoring for offset0 msPassed
test mismatch quality scoring with early exit0 msPassed
we shouldn't try to realign a region with no target2 msPassed
we shouldn't try to realign reads with no indel evidence0.48 secPassed