SuccessChanges

Summary

  1. Replace deprecated AccumulatorParam with AccumulatorV2. (details)
  2. Deprecate utils-metrics for removal in version 0.3.0. (details)
  3. Modifying changelog. (details)
  4. Modifying pom.xml files for new development after 0.2.16 release. (details)
  5. Fix argument check. (details)
  6. Move utils-metrics doc from top level README.md to module. (details)
  7. Remove utils-metrics module from build. (details)
  8. Remove deprecated classes and methods. (details)
  9. Remove coveralls from build. (details)
  10. Use scala.version.prefix property for dependencies. (details)
  11. Add move to Spark 2/3 scripts. (details)
Commit 5ae7cb0a482aa1929a83202a9ff03ddb2e9ca639 by heuermh
Replace deprecated AccumulatorParam with AccumulatorV2.
The file was modifiedutils-intervalrdd/src/main/scala/org/bdgenomics/utils/interval/array/IntervalArray.scala (diff)
Commit 598b7fc3c520d6685c29778ceaefacdae9fce784 by heuermh
Deprecate utils-metrics for removal in version 0.3.0.
The file was modifiedutils-metrics/src/main/scala/org/bdgenomics/utils/metrics/aggregators/Aggregator.scala (diff)
The file was modifiedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/ASCIITable.scala (diff)
The file was modifiedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/MonitorTable.scala (diff)
The file was modifiedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/ServoTimer.scala (diff)
The file was modifiedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/DurationFormatting.scala (diff)
The file was modifiedutils-metrics/src/main/scala/org/bdgenomics/utils/metrics/Histogram.scala (diff)
The file was addedutils-metrics/src/main/scala/org/bdgenomics/utils/metrics/aggregators/package.scala
The file was modifiedutils-metrics/src/main/scala/org/bdgenomics/utils/metrics/Collection.scala (diff)
The file was modifiedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/MetricsRecorder.scala (diff)
The file was addedutils-metrics/src/main/scala/org/bdgenomics/utils/metrics/package.scala
The file was modifiedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/ServoTimersAccumulableParam.scala (diff)
The file was modifiedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/RecordedMetrics.scala (diff)
The file was addedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/package.scala
The file was modifiedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/Alignment.scala (diff)
The file was modifiedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/Metrics.scala (diff)
The file was modifiedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/InstrumentationFunctions.scala (diff)
The file was modifiedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/MetricsListener.scala (diff)
The file was modifiedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/SparkMetrics.scala (diff)
Commit a550b9d3a7ca90986f831e88698582263cc06d94 by heuermh
Modifying changelog.
The file was modifiedCHANGES.md (diff)
Commit dd9f5e89ee65e35f6167caa17d4adb8e74a839f3 by heuermh
Modifying pom.xml files for new development after 0.2.16 release.
The file was modifiedutils-cli/pom.xml (diff)
The file was modifiedutils-minhash/pom.xml (diff)
The file was modifiedutils-serialization/pom.xml (diff)
The file was modifiedutils-metrics/pom.xml (diff)
The file was modifiedutils-intervalrdd/pom.xml (diff)
The file was modifiedpom.xml (diff)
The file was modifiedutils-io/pom.xml (diff)
The file was modifiedutils-statistics/pom.xml (diff)
The file was modifiedutils-misc/pom.xml (diff)
The file was modifiedscripts/release/release.sh (diff)
Commit a85a0fd11fc8ea95723c7f93a149db5b59a94bfc by heuermh
Move utils-metrics doc from top level README.md to module.
The file was addedutils-metrics/README.md
The file was modifiedREADME.md (diff)
Commit b7b285ddb968f10db3544a0ab1116067e3f8db01 by heuermh
Remove utils-metrics module from build.
The file was removedutils-metrics/src/test/scala/org/bdgenomics/utils/instrumentation/MetricsRecorderSuite.scala
The file was modifiedutils-io/pom.xml (diff)
The file was removedutils-metrics/src/test/scala/org/bdgenomics/utils/instrumentation/TimerSuite.scala
The file was removedutils-metrics/.gitignore
The file was removedutils-metrics/README.md
The file was removedutils-metrics/src/main/scala/org/bdgenomics/utils/metrics/aggregators/Aggregator.scala
The file was removedutils-metrics/src/test/scala/org/bdgenomics/utils/metrics/aggregators/AggregatorSuite.scala
The file was removedutils-metrics/src/main/scala/org/apache/spark/rdd/InstrumentedRDDFunctions.scala
The file was removedutils-metrics/src/main/scala/org/apache/spark/rdd/Timer.scala
The file was removedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/ServoTimersAccumulableParam.scala
The file was removedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/MetricsRecorder.scala
The file was removedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/MonitorTable.scala
The file was removedutils-metrics/src/main/scala/org/apache/spark/rdd/InstrumentedOrderedRDDFunctions.scala
The file was removedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/Metrics.scala
The file was removedutils-metrics/src/main/scala/org/apache/spark/rdd/InstrumentedPairRDDFunctions.scala
The file was removedutils-metrics/src/test/scala/org/bdgenomics/utils/instrumentation/InstrumentationTestingUtil.scala
The file was removedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/ServoTimer.scala
The file was removedutils-metrics/src/test/scala/org/bdgenomics/utils/instrumentation/InstrumentedRDDSuite.scala
The file was modifiedutils-cli/src/main/scala/org/bdgenomics/utils/cli/BDGCommand.scala (diff)
The file was removedutils-metrics/src/main/scala/org/bdgenomics/utils/metrics/aggregators/package.scala
The file was removedutils-metrics/src/main/scala/org/bdgenomics/utils/metrics/Collection.scala
The file was removedutils-metrics/pom.xml
The file was removedutils-metrics/src/test/scala/org/bdgenomics/utils/instrumentation/ServoTimersAccumulableParamSuite.scala
The file was removedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/MetricsListener.scala
The file was removedutils-metrics/src/test/scala/org/bdgenomics/utils/instrumentation/ServoTimerSuite.scala
The file was removedutils-metrics/src/main/scala/org/apache/spark/rdd/InstrumentedRDD.scala
The file was removedutils-metrics/src/test/scala/org/bdgenomics/utils/instrumentation/InstrumentedPairRDDFunctionsSuite.scala
The file was removedutils-metrics/src/main/scala/org/apache/spark/rdd/MetricsContext.scala
The file was removedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/ASCIITable.scala
The file was removedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/SparkMetrics.scala
The file was removedutils-metrics/src/main/scala/org/bdgenomics/utils/metrics/package.scala
The file was removedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/InstrumentationFunctions.scala
The file was removedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/Alignment.scala
The file was removedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/RecordedMetrics.scala
The file was modifiedutils-cli/pom.xml (diff)
The file was removedutils-metrics/src/test/scala/org/bdgenomics/utils/instrumentation/MonitorTableSuite.scala
The file was removedutils-metrics/src/test/scala/org/bdgenomics/utils/metrics/HistogramSuite.scala
The file was modifiedpom.xml (diff)
The file was removedutils-metrics/src/main/scala/org/apache/spark/rdd/InstrumentedOutputFormat.scala
The file was removedutils-metrics/src/test/scala/org/bdgenomics/utils/instrumentation/ASCIITableSuite.scala
The file was removedutils-metrics/src/main/scala/org/bdgenomics/utils/metrics/Histogram.scala
The file was removedutils-metrics/src/test/scala/org/bdgenomics/utils/instrumentation/SparkMetricsSuite.scala
The file was removedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/DurationFormatting.scala
The file was removedutils-metrics/src/main/scala/org/bdgenomics/utils/instrumentation/package.scala
The file was removedutils-metrics/src/test/scala/org/bdgenomics/utils/instrumentation/DurationFormattingSuite.scala
The file was removedutils-metrics/src/test/scala/org/bdgenomics/utils/instrumentation/InstrumentedOrderedRDDFunctionsSuite.scala
The file was removedutils-metrics/src/test/scala/org/bdgenomics/utils/instrumentation/MetricsSuite.scala
The file was removedutils-metrics/src/test/scala/org/bdgenomics/utils/instrumentation/TestingClock.scala
The file was removedutils-metrics/src/test/scala/org/bdgenomics/utils/instrumentation/MetricsListenerSuite.scala
Commit 1cc2421e3e36ec20eb15caa8a1f0e2afa9c899a3 by heuermh
Remove deprecated classes and methods.
The file was removedutils-misc/src/main/scala/org/bdgenomics/utils/misc/HadoopUtil.scala
The file was removedutils-misc/src/main/scala/org/bdgenomics/utils/misc/Logging.scala
Commit 0b28ca877fb92fc1b9458f83dcea12555f4a1f0a by heuermh
Remove coveralls from build.
The file was modifiedscripts/jenkins-test (diff)
The file was removedscripts/publish-scaladoc.sh
The file was removedscripts/changelog.sh
Commit e674474943ebdca6df9e15fb4e44c796f927eeef by heuermh
Use scala.version.prefix property for dependencies.
The file was modifiedutils-intervalrdd/pom.xml (diff)
The file was modifiedutils-io/pom.xml (diff)
The file was modifiedutils-minhash/pom.xml (diff)
The file was modifiedutils-statistics/pom.xml (diff)
The file was modifiedutils-serialization/pom.xml (diff)
The file was modifiedutils-cli/pom.xml (diff)
The file was modifiedpom.xml (diff)
The file was modifiedutils-misc/pom.xml (diff)
Commit ff3c69213a343770e184a0f0ce0bad709d2610fc by heuermh
Add move to Spark 2/3 scripts.
The file was addedscripts/move_to_spark_3.sh
The file was addedscripts/move_to_spark_2.sh